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The map label for this gene is yqgF [C]

Identifier: 116515819

GI number: 116515819

Start: 184622

End: 185041

Strand: Direct

Name: yqgF [C]

Synonym: SPD_0181

Alternate gene names: 116515819

Gene position: 184622-185041 (Clockwise)

Preceding gene: 116516360

Following gene: 116516683

Centisome position: 9.02

GC content: 41.67

Gene sequence:

>420_bases
ATGAGAATTATGGGATTGGACGTCGGTTCAAAAACGGTAGGGGTGGCGATTAGCGATCCGCTTGGTTTTACAGCTCAAGG
GCTTGAAATCATCCAGATAAATGAAGAACAAGGCCAATTTGGTTTTGACCGCGTTAAGGAATTGGTTGATACTTACAAGG
TGGAACGATTTGTAGTGGGCTTGCCTAAAAACATGAACAATACAAGTGGACCGCGCGTAGAAGCTAGTCAAGCCTACGGA
GCAAAGCTAGAAGAGTTTTTTGGTTTACCAGTAGACTATCAGGATGAACGCTTGACAACAGTGGCTGCTGAGCGCATGTT
GATTGAACAAGCAGATATCAGTCGCAATAAGCGCAAGAAAGTCATTGATAAGTTAGCAGCTCAGCTGATTTTACAAAATT
ATTTAGATAGAAAATTTTAA

Upstream 100 bases:

>100_bases
TAATAATGCACGAAATCAAATCCGTAAGTATGAGCGTGATGAAATCGTTGAGGAATTGGTTCGCTACTATCTCAAAGGAC
AAGGAGTCGATCTATAACCT

Downstream 100 bases:

>100_bases
TATAAAGGAGAGGCTATGTCACACGATCATAACCACGACCACGAAGAACGTGAACTAATCACACTAGTAGATGAGCAAGG
AAATGAAACCTTGTTTGAAA

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGLPKNMNNTSGPRVEASQAYG
AKLEEFFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKVIDKLAAQLILQNYLDRKF

Sequences:

>Translated_139_residues
MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGLPKNMNNTSGPRVEASQAYG
AKLEEFFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKVIDKLAAQLILQNYLDRKF
>Mature_139_residues
MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGLPKNMNNTSGPRVEASQAYG
AKLEEFFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKVIDKLAAQLILQNYLDRKF

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=137, Percent_Identity=29.1970802919708, Blast_Score=70, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_STRP2 (Q04MP8)

Other databases:

- EMBL:   CP000410
- RefSeq:   YP_815700.1
- ProteinModelPortal:   Q04MP8
- SMR:   Q04MP8
- STRING:   Q04MP8
- EnsemblBacteria:   EBSTRT00000019729
- GeneID:   4442867
- GenomeReviews:   CP000410_GR
- KEGG:   spd:SPD_0181
- eggNOG:   COG0816
- GeneTree:   EBGT00050000027465
- HOGENOM:   HBG607919
- OMA:   VLILQNY
- ProtClustDB:   PRK00109
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 15655; Mature: 15655

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVG
CEEEECCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHEEE
LPKNMNNTSGPRVEASQAYGAKLEEFFGLPVDYQDERLTTVAAERMLIEQADISRNKRKK
CCCCCCCCCCCCEECCHHHCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHH
VIDKLAAQLILQNYLDRKF
HHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVG
CEEEECCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHEEE
LPKNMNNTSGPRVEASQAYGAKLEEFFGLPVDYQDERLTTVAAERMLIEQADISRNKRKK
CCCCCCCCCCCCEECCHHHCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHH
VIDKLAAQLILQNYLDRKF
HHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA