Click here to switch to the map view.

The map label for this gene is yrrL [H]

Identifier: 116515658

GI number: 116515658

Start: 1358858

End: 1360513

Strand: Reverse

Name: yrrL [H]

Synonym: SPD_1346

Alternate gene names: 116515658

Gene position: 1360513-1358858 (Counterclockwise)

Preceding gene: 116516733

Following gene: 116516490

Centisome position: 66.49

GC content: 41.24

Gene sequence:

>1656_bases
TTGAGTGAAAAGTCAAGAGAAGAAGAGAAATTAAGCTTTAAAGAGCAGATTCTGAGAGATTTAGAAAAAGTAAAAGGCTA
TGATGAAGTTCTGAAAGAAGATGAGGCAGTAGTTCGCACTCCTGCAAATGAACCTTCAGCTGAAGAACTCATGGCTGATT
CCTTGTCAACGGTAGAGGAGATTATGAGAAAAGCTCCTACCGTGCCTACTCACCCAAGTCAAGGTGTACCAGCTTCTCCA
GCAGATGAGATTCAAAGAGAAACTCCTGGTGTTCCAAGTCATCCAAGTCAAGATGTACCTTCTTCTCCAGCGGAAGAAAG
TGGATCAAGACCAGGTCCAGGTCCTGTTAGACCTAAGAAACTTGAAAGAGAATACAATGAAACCCCAACAAGGGTAGCTG
TTTCCTATACGACGGCAGAGAAAAAAGCAGAACAAGCAGGTCCAGAAACACCTACGCCTGCTACAGAAACAGTGGATATC
ATCAGAGATACATCACGTCGTAGCCGTAGAGAAGGAGCAAAACCCGCTAAGCCTAAGAAAGAGAAGAAGTCACATGTGAA
AGCTTTTGTGATTTCATTCCTTGTATTCCTTGCCTTGCTCTCAGCAGGTGGTTACTTTGGTTACCAGTACGTGCTAGATT
CCTTATTACCTATCGATGCTAATTCTAAGAAATATGTGACGGTTGGAATTCCAGAAGGTTCAAACGTTCAAGAAATCGGT
ACGACGCTTGAAAAAGCTGGTTTGGTAAAGCATGGTCTGATTTTTAGTTTTTATGCCAAGTATAAAAATTATACCGACTT
GAAAGCAGGTTACTACAATTTGCAAAAGAGTATGAGTACAGAAGACTTACTCAAAGAGTTGCAAAAAGGTGGAACAGATG
AACCGCAAGAACCTGTACTTGCGACTTTGACAATTCCAGAAGGTTATACCTTGGATCAGATTGCTCAAACTGTGGGTCAA
TTGCAAGGTGACTTCAAAGAGTCTTTGACAGCGGAGGCTTTCTTGGCTAAAGTTCAAGATGAGACGTTTATCAGTCAAGC
AGTAGCGAAATATCCTACTTTACTGGAAAGTTTGCCTGTAAAAGACAGCGGTGCGCGTTATCGTTTGGAAGGATACCTTT
TCCCAGCTACATACTCTATCAAGGAAAGCACAACTATTGAGAGCTTGATTGATGAGATGTTAGCTGCTATGGATAAGAAC
CTATCTCCTTACTATAGTACTATCAAATCTAAAAACTTGACTGTCAATGAGTTGTTGACCATTGCTTCCTTGGTCGAAAA
AGAAGGTGCCAAGACAGAAGATCGTAAGCTCATTGCAGGTGTATTCTACAATCGTTTGAATCGTGATATGCCACTTCAAA
GTAATATTGCAATCTTGTATGCCCAAGGAAAACTGGGGCAAAATATCAGTCTAGCTGAGGATGTTGCGATTGATACCAAC
ATTGATTCACCTTATAATGTTTATAAAAATGTAGGTCTCATGCCTGGTCCAGTCGATAGTCCAAGTCTGGATGCGATTGA
GTCAAGCATCAATCAAACTAAGAGCGATAACCTCTACTTTGTAGCAGATGTCACAGAAGGCAAGGTCTACTATGCTAACA
ATCAAGAAGACCACGACCGCAATGTCGCTGAACATGTCAACAGCAAATTAAACTAA

Upstream 100 bases:

>100_bases
TCTGGGAAATGAAAAAATAAGTTAGGAAAAGTATCATAGATTGCTTTTTTTGGACTTTTAAGATATAATATTATGGATTA
TCAACAAGGAGGAAAAACTT

Downstream 100 bases:

>100_bases
ACAAACTAAAATTATGTGATACTTCACATAATTTTCTTTAGAAAATATTATCAGAAGAAAGTTGAGAAAAATGGCAGAAA
AAACATATCCTATGACCCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 551; Mature: 550

Protein sequence:

>551_residues
MSEKSREEEKLSFKEQILRDLEKVKGYDEVLKEDEAVVRTPANEPSAEELMADSLSTVEEIMRKAPTVPTHPSQGVPASP
ADEIQRETPGVPSHPSQDVPSSPAEESGSRPGPGPVRPKKLEREYNETPTRVAVSYTTAEKKAEQAGPETPTPATETVDI
IRDTSRRSRREGAKPAKPKKEKKSHVKAFVISFLVFLALLSAGGYFGYQYVLDSLLPIDANSKKYVTVGIPEGSNVQEIG
TTLEKAGLVKHGLIFSFYAKYKNYTDLKAGYYNLQKSMSTEDLLKELQKGGTDEPQEPVLATLTIPEGYTLDQIAQTVGQ
LQGDFKESLTAEAFLAKVQDETFISQAVAKYPTLLESLPVKDSGARYRLEGYLFPATYSIKESTTIESLIDEMLAAMDKN
LSPYYSTIKSKNLTVNELLTIASLVEKEGAKTEDRKLIAGVFYNRLNRDMPLQSNIAILYAQGKLGQNISLAEDVAIDTN
IDSPYNVYKNVGLMPGPVDSPSLDAIESSINQTKSDNLYFVADVTEGKVYYANNQEDHDRNVAEHVNSKLN

Sequences:

>Translated_551_residues
MSEKSREEEKLSFKEQILRDLEKVKGYDEVLKEDEAVVRTPANEPSAEELMADSLSTVEEIMRKAPTVPTHPSQGVPASP
ADEIQRETPGVPSHPSQDVPSSPAEESGSRPGPGPVRPKKLEREYNETPTRVAVSYTTAEKKAEQAGPETPTPATETVDI
IRDTSRRSRREGAKPAKPKKEKKSHVKAFVISFLVFLALLSAGGYFGYQYVLDSLLPIDANSKKYVTVGIPEGSNVQEIG
TTLEKAGLVKHGLIFSFYAKYKNYTDLKAGYYNLQKSMSTEDLLKELQKGGTDEPQEPVLATLTIPEGYTLDQIAQTVGQ
LQGDFKESLTAEAFLAKVQDETFISQAVAKYPTLLESLPVKDSGARYRLEGYLFPATYSIKESTTIESLIDEMLAAMDKN
LSPYYSTIKSKNLTVNELLTIASLVEKEGAKTEDRKLIAGVFYNRLNRDMPLQSNIAILYAQGKLGQNISLAEDVAIDTN
IDSPYNVYKNVGLMPGPVDSPSLDAIESSINQTKSDNLYFVADVTEGKVYYANNQEDHDRNVAEHVNSKLN
>Mature_550_residues
SEKSREEEKLSFKEQILRDLEKVKGYDEVLKEDEAVVRTPANEPSAEELMADSLSTVEEIMRKAPTVPTHPSQGVPASPA
DEIQRETPGVPSHPSQDVPSSPAEESGSRPGPGPVRPKKLEREYNETPTRVAVSYTTAEKKAEQAGPETPTPATETVDII
RDTSRRSRREGAKPAKPKKEKKSHVKAFVISFLVFLALLSAGGYFGYQYVLDSLLPIDANSKKYVTVGIPEGSNVQEIGT
TLEKAGLVKHGLIFSFYAKYKNYTDLKAGYYNLQKSMSTEDLLKELQKGGTDEPQEPVLATLTIPEGYTLDQIAQTVGQL
QGDFKESLTAEAFLAKVQDETFISQAVAKYPTLLESLPVKDSGARYRLEGYLFPATYSIKESTTIESLIDEMLAAMDKNL
SPYYSTIKSKNLTVNELLTIASLVEKEGAKTEDRKLIAGVFYNRLNRDMPLQSNIAILYAQGKLGQNISLAEDVAIDTNI
DSPYNVYKNVGLMPGPVDSPSLDAIESSINQTKSDNLYFVADVTEGKVYYANNQEDHDRNVAEHVNSKLN

Specific function: Unknown

COG id: COG1559

COG function: function code R; Predicted periplasmic solute-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0755 family [H]

Homologues:

Organism=Escherichia coli, GI1787339, Length=356, Percent_Identity=25, Blast_Score=96, Evalue=6e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003770 [H]

Pfam domain/function: PF02618 ADC_lyase [H]

EC number: NA

Molecular weight: Translated: 60798; Mature: 60667

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEKSREEEKLSFKEQILRDLEKVKGYDEVLKEDEAVVRTPANEPSAEELMADSLSTVEE
CCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHH
IMRKAPTVPTHPSQGVPASPADEIQRETPGVPSHPSQDVPSSPAEESGSRPGPGPVRPKK
HHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHH
LEREYNETPTRVAVSYTTAEKKAEQAGPETPTPATETVDIIRDTSRRSRREGAKPAKPKK
HHHHHCCCCCEEEEEEHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHH
EKKSHVKAFVISFLVFLALLSAGGYFGYQYVLDSLLPIDANSKKYVTVGIPEGSNVQEIG
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHH
TTLEKAGLVKHGLIFSFYAKYKNYTDLKAGYYNLQKSMSTEDLLKELQKGGTDEPQEPVL
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCEE
ATLTIPEGYTLDQIAQTVGQLQGDFKESLTAEAFLAKVQDETFISQAVAKYPTLLESLPV
EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
KDSGARYRLEGYLFPATYSIKESTTIESLIDEMLAAMDKNLSPYYSTIKSKNLTVNELLT
CCCCCEEEEEEEEECCEECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHH
IASLVEKEGAKTEDRKLIAGVFYNRLNRDMPLQSNIAILYAQGKLGQNISLAEDVAIDTN
HHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCHHHCCEEECC
IDSPYNVYKNVGLMPGPVDSPSLDAIESSINQTKSDNLYFVADVTEGKVYYANNQEDHDR
CCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCEEEECCCCCHHHH
NVAEHVNSKLN
HHHHHHHHCCC
>Mature Secondary Structure 
SEKSREEEKLSFKEQILRDLEKVKGYDEVLKEDEAVVRTPANEPSAEELMADSLSTVEE
CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHH
IMRKAPTVPTHPSQGVPASPADEIQRETPGVPSHPSQDVPSSPAEESGSRPGPGPVRPKK
HHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHH
LEREYNETPTRVAVSYTTAEKKAEQAGPETPTPATETVDIIRDTSRRSRREGAKPAKPKK
HHHHHCCCCCEEEEEEHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHH
EKKSHVKAFVISFLVFLALLSAGGYFGYQYVLDSLLPIDANSKKYVTVGIPEGSNVQEIG
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHH
TTLEKAGLVKHGLIFSFYAKYKNYTDLKAGYYNLQKSMSTEDLLKELQKGGTDEPQEPVL
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCEE
ATLTIPEGYTLDQIAQTVGQLQGDFKESLTAEAFLAKVQDETFISQAVAKYPTLLESLPV
EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
KDSGARYRLEGYLFPATYSIKESTTIESLIDEMLAAMDKNLSPYYSTIKSKNLTVNELLT
CCCCCEEEEEEEEECCEECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHH
IASLVEKEGAKTEDRKLIAGVFYNRLNRDMPLQSNIAILYAQGKLGQNISLAEDVAIDTN
HHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCHHHCCEEECC
IDSPYNVYKNVGLMPGPVDSPSLDAIESSINQTKSDNLYFVADVTEGKVYYANNQEDHDR
CCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCEEEECCCCCHHHH
NVAEHVNSKLN
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]