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The map label for this gene is yycB [H]

Identifier: 116515559

GI number: 116515559

Start: 96794

End: 97960

Strand: Reverse

Name: yycB [H]

Synonym: SPD_0097

Alternate gene names: 116515559

Gene position: 97960-96794 (Counterclockwise)

Preceding gene: 116515790

Following gene: 116515726

Centisome position: 4.79

GC content: 44.82

Gene sequence:

>1167_bases
ATGAAAAAGCAATCACTCTTTTTTGTTCCAGGTATTATCCTGATTGGTGTTTCCTTGCGAACTCCTTTTACTGTTTTACC
CATTATTTTGGGAAATATTTCGCAAGGTCTGGAGGTAGAAGTTAGTTCGCTTGGTGTCTTGACCAGCCTGCCTCTCCTTA
TGTTTACCCTCTTTTCACCATTTTCTACCCAACTGGCTCAGAAAATCGGCTTGGAGCATCTCTTCACCTACAGCCTCTTC
TTCTTGACCATCGGCTCACTTATTCGACTAATCAATCTGCCCCTGCTCTATCTAGGAACCTTGATGGTTGGGGCAAGTGT
CGCAGTCATCAATGTCCTGCTTCCTAGTCTTATCCAAGCCAATCAACCAAAGAAAATTGGTTTTCTGACCACCTTATATG
TAACGTCTATGGGGATTGCAACGGCTCTGGCTTCCTATCTAGCTGTGCCCATTACACAAGCCAGTTCTTGGAAAGGACTT
ATCCTTCTCCTCACGTTACTCTGTCTAGCAACTTTTTTGGTCTGGCTCCCAAATCACCGCTATAATCATAGACTAGCTCC
ACAAACCAAACAAAAAAGTCAAATAAAGGTCATGCGTAATAAACAGGTTTGGGCAATTATTATCTTTTCAGGTTTTCAAT
CCTTGATCTTTTACACCGTCATGACCTGGTTACCTACCATGTCTATCCATGCAGGTCTATCCAGTCACGAAGCTGGCTTG
CTGACTTCTATCTTATCTCTGATTAGCATTCCTTTTTCAATGACCATCCCAAGCCTGACAACCAGTTTATCTACTCGCAA
CCGTCAGCTCATGCTCACTCTGGTTTCACTAGCTGGTGTGATCGGCATTTCCATGCTCTTTTTCCCAATCAATAATTTCA
TTTACTGGCTTGCCATCCATCTCCTCATCGGAACCGCAACCAGCGCCCTCTTCCCTTATCTCATGGTCAACTTTTCACTC
AAGACAAGCGCCCCTGAAAAGACAGCCCAATTGTCCGGCCTATCTCAAACAGGAGGCTATATCCTAGCAGCCTTTGGGCC
AACCCTCTTTGGTTACAGTTTTGACCTGTTCCACTCTTGGGTACCATCTGTAGCTGCCCTCTTGCTCATCGATATCCTGA
TGACTGTGGCCCTCTTTACAGTGGACAGAGCGGATAAGATCCTTTAA

Upstream 100 bases:

>100_bases
CTTTCCCATTTTTATCTTGAAAGCCAGAAACCTTACTTGACATTATAGTGAAAAAGCCTTAAAATAAGCTGTTATTAAAA
TCAGCTAGAAGAGGTATTAT

Downstream 100 bases:

>100_bases
ACTTCTAGTTTTAGCTAGAAGTTTTTTATATATAAAAATTTTACACATTTCTCTTGACAGGGCTTTCTTTTAGATGTACA
ATGTATGTGTAGAAAAATTA

Product: transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 388

Protein sequence:

>388_residues
MKKQSLFFVPGIILIGVSLRTPFTVLPIILGNISQGLEVEVSSLGVLTSLPLLMFTLFSPFSTQLAQKIGLEHLFTYSLF
FLTIGSLIRLINLPLLYLGTLMVGASVAVINVLLPSLIQANQPKKIGFLTTLYVTSMGIATALASYLAVPITQASSWKGL
ILLLTLLCLATFLVWLPNHRYNHRLAPQTKQKSQIKVMRNKQVWAIIIFSGFQSLIFYTVMTWLPTMSIHAGLSSHEAGL
LTSILSLISIPFSMTIPSLTTSLSTRNRQLMLTLVSLAGVIGISMLFFPINNFIYWLAIHLLIGTATSALFPYLMVNFSL
KTSAPEKTAQLSGLSQTGGYILAAFGPTLFGYSFDLFHSWVPSVAALLLIDILMTVALFTVDRADKIL

Sequences:

>Translated_388_residues
MKKQSLFFVPGIILIGVSLRTPFTVLPIILGNISQGLEVEVSSLGVLTSLPLLMFTLFSPFSTQLAQKIGLEHLFTYSLF
FLTIGSLIRLINLPLLYLGTLMVGASVAVINVLLPSLIQANQPKKIGFLTTLYVTSMGIATALASYLAVPITQASSWKGL
ILLLTLLCLATFLVWLPNHRYNHRLAPQTKQKSQIKVMRNKQVWAIIIFSGFQSLIFYTVMTWLPTMSIHAGLSSHEAGL
LTSILSLISIPFSMTIPSLTTSLSTRNRQLMLTLVSLAGVIGISMLFFPINNFIYWLAIHLLIGTATSALFPYLMVNFSL
KTSAPEKTAQLSGLSQTGGYILAAFGPTLFGYSFDLFHSWVPSVAALLLIDILMTVALFTVDRADKIL
>Mature_388_residues
MKKQSLFFVPGIILIGVSLRTPFTVLPIILGNISQGLEVEVSSLGVLTSLPLLMFTLFSPFSTQLAQKIGLEHLFTYSLF
FLTIGSLIRLINLPLLYLGTLMVGASVAVINVLLPSLIQANQPKKIGFLTTLYVTSMGIATALASYLAVPITQASSWKGL
ILLLTLLCLATFLVWLPNHRYNHRLAPQTKQKSQIKVMRNKQVWAIIIFSGFQSLIFYTVMTWLPTMSIHAGLSSHEAGL
LTSILSLISIPFSMTIPSLTTSLSTRNRQLMLTLVSLAGVIGISMLFFPINNFIYWLAIHLLIGTATSALFPYLMVNFSL
KTSAPEKTAQLSGLSQTGGYILAAFGPTLFGYSFDLFHSWVPSVAALLLIDILMTVALFTVDRADKIL

Specific function: Unknown

COG id: COG2807

COG function: function code P; Cyanate permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. Cyanate porter (TC 2.A.1.17) family [H]

Homologues:

Organism=Escherichia coli, GI1788092, Length=388, Percent_Identity=30.1546391752577, Blast_Score=156, Evalue=3e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004747
- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 42523; Mature: 42523

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKQSLFFVPGIILIGVSLRTPFTVLPIILGNISQGLEVEVSSLGVLTSLPLLMFTLFSP
CCCCCEEEECHHHHEECCCCCCHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHCH
FSTQLAQKIGLEHLFTYSLFFLTIGSLIRLINLPLLYLGTLMVGASVAVINVLLPSLIQA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCC
NQPKKIGFLTTLYVTSMGIATALASYLAVPITQASSWKGLILLLTLLCLATFLVWLPNHR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
YNHRLAPQTKQKSQIKVMRNKQVWAIIIFSGFQSLIFYTVMTWLPTMSIHAGLSSHEAGL
CCCCCCCCCCHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
LTSILSLISIPFSMTIPSLTTSLSTRNRQLMLTLVSLAGVIGISMLFFPINNFIYWLAIH
HHHHHHHHHCCHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLIGTATSALFPYLMVNFSLKTSAPEKTAQLSGLSQTGGYILAAFGPTLFGYSFDLFHSW
HHHHHHHHHHHHHHHHEEEECCCCCHHHHHHCCCCCCCCEEEEECCHHHHCCHHHHHHHH
VPSVAALLLIDILMTVALFTVDRADKIL
HHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKQSLFFVPGIILIGVSLRTPFTVLPIILGNISQGLEVEVSSLGVLTSLPLLMFTLFSP
CCCCCEEEECHHHHEECCCCCCHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHCH
FSTQLAQKIGLEHLFTYSLFFLTIGSLIRLINLPLLYLGTLMVGASVAVINVLLPSLIQA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCC
NQPKKIGFLTTLYVTSMGIATALASYLAVPITQASSWKGLILLLTLLCLATFLVWLPNHR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
YNHRLAPQTKQKSQIKVMRNKQVWAIIIFSGFQSLIFYTVMTWLPTMSIHAGLSSHEAGL
CCCCCCCCCCHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
LTSILSLISIPFSMTIPSLTTSLSTRNRQLMLTLVSLAGVIGISMLFFPINNFIYWLAIH
HHHHHHHHHCCHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLIGTATSALFPYLMVNFSLKTSAPEKTAQLSGLSQTGGYILAAFGPTLFGYSFDLFHSW
HHHHHHHHHHHHHHHHEEEECCCCCHHHHHHCCCCCCCCEEEEECCHHHHCCHHHHHHHH
VPSVAALLLIDILMTVALFTVDRADKIL
HHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]