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The map label for this gene is whiA

Identifier: 116515514

GI number: 116515514

Start: 1415147

End: 1416058

Strand: Reverse

Name: whiA

Synonym: SPD_1394

Alternate gene names: 116515514

Gene position: 1416058-1415147 (Counterclockwise)

Preceding gene: 116516455

Following gene: 116516268

Centisome position: 69.21

GC content: 45.18

Gene sequence:

>912_bases
ATGAGTTTCACAGTAGCAGTAAAAGAAGAAATCCTGGGCCAACACCATCTGAGCTGGCATGAATTATCTGCCATTATCAA
AATGTCTGGTAGCATCGGTCTCTCGACTTCGGGCTTGACTTTGTCAGTTGTGACAGAAAATGCCAAACTGGCCCGTCACC
TCTATGAGTCCTTTCTCCATTTCTATGAAATCAAATCTGAAATTCGTCACCACCAACGGAGCAATCTTCGCAAGAATCGC
GTCTATACCGTTTTTACAGATGAAAAGGTGCAGGATTTGTTAAGTGATTTGCACTTGGCAGACTCTTTCTTTGGCCTGGA
AACAGGTATTGATGAGGCGATTTTATCGGATGAGGAAGCAGGTCGTGCCTATCTCTGTGGCGCTTTCTTGGCAAATGGGA
GCATTCGTGACCCTGAGTCAGGCAAGTACCAGTTGGAAATCAGTTCTGTTTATCTGGACCACGCGCAAGGAATTGCCTCC
CTTCTCCAACAGTTTTTACTGGATGCCAAGGTGCTTGAGCGCAAGAAGGGGGCTGTGACCTATCTCCAGCGAGCAGAAGA
CATTATGGACTTCTTGATAGTAATAGGAGCCATGCAGGCACGTGATGATTTTGAGCGGGTTAAGATTTTGCGAGAAACCC
GTAACGACCTCAATCGAGCTAATAATGCCGAGACAGCTAATATCGCTCGGACAGTTTCTGCCAGCATGAAGACCATTAAC
AATATCAGTAAAATCAAAGATATCATGGGCTTAGAAAATTTGCCAGTAGATTTGCAGGAAGTGGCGCAACTGAGGATTCA
GCACCCAGACTACTCTATCCAGCAGTTAGCAGATAGTCTCAGCACCCCTCTGACCAAAAGTGGTGTCAATCACAGACTCA
GAAAAATCAATAAGATAGCGGATGAATTATAA

Upstream 100 bases:

>100_bases
GCGTGATTTCATCTAACTTCCTTCGTCTGGAAAATGGCGGTGCCTTCCACGATGGAGATTTGATTGTGGACGAGTTGATG
CGCATTATACAGGTGAAAAA

Downstream 100 bases:

>100_bases
AACCACGAATCCTATGTGACTCGTGGTTCTTTTTTATAAACTGGTAGAGTGTTTTGGTTGTACTTTTTGTTCAGGGTCAA
TGTAGTTGATAGCGTTGTTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 302

Protein sequence:

>303_residues
MSFTVAVKEEILGQHHLSWHELSAIIKMSGSIGLSTSGLTLSVVTENAKLARHLYESFLHFYEIKSEIRHHQRSNLRKNR
VYTVFTDEKVQDLLSDLHLADSFFGLETGIDEAILSDEEAGRAYLCGAFLANGSIRDPESGKYQLEISSVYLDHAQGIAS
LLQQFLLDAKVLERKKGAVTYLQRAEDIMDFLIVIGAMQARDDFERVKILRETRNDLNRANNAETANIARTVSASMKTIN
NISKIKDIMGLENLPVDLQEVAQLRIQHPDYSIQQLADSLSTPLTKSGVNHRLRKINKIADEL

Sequences:

>Translated_303_residues
MSFTVAVKEEILGQHHLSWHELSAIIKMSGSIGLSTSGLTLSVVTENAKLARHLYESFLHFYEIKSEIRHHQRSNLRKNR
VYTVFTDEKVQDLLSDLHLADSFFGLETGIDEAILSDEEAGRAYLCGAFLANGSIRDPESGKYQLEISSVYLDHAQGIAS
LLQQFLLDAKVLERKKGAVTYLQRAEDIMDFLIVIGAMQARDDFERVKILRETRNDLNRANNAETANIARTVSASMKTIN
NISKIKDIMGLENLPVDLQEVAQLRIQHPDYSIQQLADSLSTPLTKSGVNHRLRKINKIADEL
>Mature_302_residues
SFTVAVKEEILGQHHLSWHELSAIIKMSGSIGLSTSGLTLSVVTENAKLARHLYESFLHFYEIKSEIRHHQRSNLRKNRV
YTVFTDEKVQDLLSDLHLADSFFGLETGIDEAILSDEEAGRAYLCGAFLANGSIRDPESGKYQLEISSVYLDHAQGIASL
LQQFLLDAKVLERKKGAVTYLQRAEDIMDFLIVIGAMQARDDFERVKILRETRNDLNRANNAETANIARTVSASMKTINN
ISKIKDIMGLENLPVDLQEVAQLRIQHPDYSIQQLADSLSTPLTKSGVNHRLRKINKIADEL

Specific function: May be required for sporulation

COG id: COG1481

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the whiA transcriptional regulatory family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): WHIA_STRP2 (Q04JI4)

Other databases:

- EMBL:   CP000410
- RefSeq:   YP_816854.1
- STRING:   Q04JI4
- EnsemblBacteria:   EBSTRT00000019173
- GeneID:   4442995
- GenomeReviews:   CP000410_GR
- KEGG:   spd:SPD_1394
- eggNOG:   COG1481
- GeneTree:   EBGT00050000028037
- HOGENOM:   HBG485718
- OMA:   DSFFGIE
- ProtClustDB:   CLSK877081
- GO:   GO:0006350
- HAMAP:   MF_01420
- InterPro:   IPR003802
- InterPro:   IPR023054
- InterPro:   IPR018478
- TIGRFAMs:   TIGR00647

Pfam domain/function: PF02650 HTH_WhiA; PF10298 WhiA_N

EC number: NA

Molecular weight: Translated: 34092; Mature: 33961

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: PS00014 ER_TARGET

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFTVAVKEEILGQHHLSWHELSAIIKMSGSIGLSTSGLTLSVVTENAKLARHLYESFLH
CCEEHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHH
FYEIKSEIRHHQRSNLRKNRVYTVFTDEKVQDLLSDLHLADSFFGLETGIDEAILSDEEA
HHHHHHHHHHHHHHCHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCC
GRAYLCGAFLANGSIRDPESGKYQLEISSVYLDHAQGIASLLQQFLLDAKVLERKKGAVT
CCCEEHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
YLQRAEDIMDFLIVIGAMQARDDFERVKILRETRNDLNRANNAETANIARTVSASMKTIN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
NISKIKDIMGLENLPVDLQEVAQLRIQHPDYSIQQLADSLSTPLTKSGVNHRLRKINKIA
HHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
DEL
HCC
>Mature Secondary Structure 
SFTVAVKEEILGQHHLSWHELSAIIKMSGSIGLSTSGLTLSVVTENAKLARHLYESFLH
CEEHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHH
FYEIKSEIRHHQRSNLRKNRVYTVFTDEKVQDLLSDLHLADSFFGLETGIDEAILSDEEA
HHHHHHHHHHHHHHCHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCC
GRAYLCGAFLANGSIRDPESGKYQLEISSVYLDHAQGIASLLQQFLLDAKVLERKKGAVT
CCCEEHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
YLQRAEDIMDFLIVIGAMQARDDFERVKILRETRNDLNRANNAETANIARTVSASMKTIN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
NISKIKDIMGLENLPVDLQEVAQLRIQHPDYSIQQLADSLSTPLTKSGVNHRLRKINKIA
HHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
DEL
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA