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The map label for this gene is def-2 [H]

Identifier: 116515494

GI number: 116515494

Start: 1399947

End: 1400357

Strand: Reverse

Name: def-2 [H]

Synonym: SPD_1381

Alternate gene names: 116515494

Gene position: 1400357-1399947 (Counterclockwise)

Preceding gene: 116516324

Following gene: 116517106

Centisome position: 68.44

GC content: 45.5

Gene sequence:

>411_bases
GTGGAAAAGAAAATTGTGAAGGATATCTTATTTTTATCTCAAGTGTCTCAGCCGGCAAGTCAGGAGGACCTTTATCTTGC
CAGAGATTTGCAGGATACACTCTTAGCAAATCGTGATACCTGTGTTGGTCTAGCTGCCAATATGATTGGGGTGCAGAAGC
GCGTGATTATCTTTAATCTTGGCTTGGTTCCCGTGGTCATGTTTAACCCAGTGCTTCTGTCCTTTGAAGGATCCTATGAG
GCAGAAGAAGGCTGTTTGTCCTTGGTAGGTGTGAGATCAACTAAGCGTTATGAAACCATAAGGCTTGCCTATCGTGACAG
CAAGTGGCAGGAACAGACCATTACCTTGACAGGCTTCCCAGCTCAGATTTGCCAGCATGAGCTGGATCACTTGGAAGGAC
GAATCATTTAG

Upstream 100 bases:

>100_bases
CGGATGGCTTTTTGCTACAGTTGAGGGAAAGGGTTTGCAGTTATCGGCTTTTGTGCTATAATTGCTATAATATAGTAAAA
AGCAAGAGGAGTGTGAGGAA

Downstream 100 bases:

>100_bases
GAGGAAAGCAAATGAAACGAATAGTCTTTGAACTTATTTTTATCGCAACGACCTGGTATATCTTTTTACCGCCCCTTAAC
CTGACCAGCTGGGAATTTCT

Product: peptide deformylase

Products: NA

Alternate protein names: PDF; Polypeptide deformylase [H]

Number of amino acids: Translated: 136; Mature: 136

Protein sequence:

>136_residues
MEKKIVKDILFLSQVSQPASQEDLYLARDLQDTLLANRDTCVGLAANMIGVQKRVIIFNLGLVPVVMFNPVLLSFEGSYE
AEEGCLSLVGVRSTKRYETIRLAYRDSKWQEQTITLTGFPAQICQHELDHLEGRII

Sequences:

>Translated_136_residues
MEKKIVKDILFLSQVSQPASQEDLYLARDLQDTLLANRDTCVGLAANMIGVQKRVIIFNLGLVPVVMFNPVLLSFEGSYE
AEEGCLSLVGVRSTKRYETIRLAYRDSKWQEQTITLTGFPAQICQHELDHLEGRII
>Mature_136_residues
MEKKIVKDILFLSQVSQPASQEDLYLARDLQDTLLANRDTCVGLAANMIGVQKRVIIFNLGLVPVVMFNPVLLSFEGSYE
AEEGCLSLVGVRSTKRYETIRLAYRDSKWQEQTITLTGFPAQICQHELDHLEGRII

Specific function: Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions

COG id: COG0242

COG function: function code J; N-formylmethionyl-tRNA deformylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polypeptide deformylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000181 [H]

Pfam domain/function: PF01327 Pep_deformylase [H]

EC number: =3.5.1.88 [H]

Molecular weight: Translated: 15372; Mature: 15372

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKKIVKDILFLSQVSQPASQEDLYLARDLQDTLLANRDTCVGLAANMIGVQKRVIIFNL
CCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHEEEEEEC
GLVPVVMFNPVLLSFEGSYEAEEGCLSLVGVRSTKRYETIRLAYRDSKWQEQTITLTGFP
CHHHHHHHCCEEEEECCCCCCHHHHHHHHCCCCCCCHHEEEEEECCCCCCCEEEEEECCH
AQICQHELDHLEGRII
HHHHHHHHHHHCCCCC
>Mature Secondary Structure
MEKKIVKDILFLSQVSQPASQEDLYLARDLQDTLLANRDTCVGLAANMIGVQKRVIIFNL
CCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHEEEEEEC
GLVPVVMFNPVLLSFEGSYEAEEGCLSLVGVRSTKRYETIRLAYRDSKWQEQTITLTGFP
CHHHHHHHCCEEEEECCCCCCHHHHHHHHCCCCCCCHHEEEEEECCCCCCCEEEEEECCH
AQICQHELDHLEGRII
HHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9572951 [H]