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The map label for this gene is fliN [H]

Identifier: 116514990

GI number: 116514990

Start: 54847

End: 55251

Strand: Direct

Name: fliN [H]

Synonym: BCc_047

Alternate gene names: 116514990

Gene position: 54847-55251 (Clockwise)

Preceding gene: 116514989

Following gene: 116514991

Centisome position: 13.17

GC content: 15.06

Gene sequence:

>405_bases
ATGATAGAAAATAATAAAAAAAAAATACAAAATAATAGTTTTAAAAAAAAATCTCATATAAAGAATTTAGACAATAAAAT
AAATAATAATAATGTAAATAAAATTATTAAAGAAAAAATATATATCAATAATTCTTATAAAACTAATGCTAATAAAGTAT
TATTTGATTCCTCAGCTCTTTCTTCTATTCCTGTTTATTTAACTATTGAATTAAGTAAAAAAAAAATTACTATTCAAGAA
TTATTACAATTTAAAAAAGGTTCTATTTTAGAATTAGAAGATAATATTAATAAACCATTAAATATTTTTATAAATAATTA
TCTTATTGCTATTGGAGAATTAGTTGTAAATAATGATTGTTATGGTGTACAAATTACAAAATTATTAACAAATAATGTTA
AATAA

Upstream 100 bases:

>100_bases
TTAAATAAAATATTATTTAATATTTTAGTAAAATATTTATATTTTATATAAATATTTTTAATAATAAAAATTATTTATAA
AATTTTTTAGGAATAATTAT

Downstream 100 bases:

>100_bases
ATTTTAAATTTATTAATTAATTTATAATAATTAATTATGTATATAATAAAATTTTATTTTTAATAAAATATTATTATAAT
TATTTATTATATATATTTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MIENNKKKIQNNSFKKKSHIKNLDNKINNNNVNKIIKEKIYINNSYKTNANKVLFDSSALSSIPVYLTIELSKKKITIQE
LLQFKKGSILELEDNINKPLNIFINNYLIAIGELVVNNDCYGVQITKLLTNNVK

Sequences:

>Translated_134_residues
MIENNKKKIQNNSFKKKSHIKNLDNKINNNNVNKIIKEKIYINNSYKTNANKVLFDSSALSSIPVYLTIELSKKKITIQE
LLQFKKGSILELEDNINKPLNIFINNYLIAIGELVVNNDCYGVQITKLLTNNVK
>Mature_134_residues
MIENNKKKIQNNSFKKKSHIKNLDNKINNNNVNKIIKEKIYINNSYKTNANKVLFDSSALSSIPVYLTIELSKKKITIQE
LLQFKKGSILELEDNINKPLNIFINNYLIAIGELVVNNDCYGVQITKLLTNNVK

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form a switch complex that is proposed to be located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=82, Percent_Identity=45.1219512195122, Blast_Score=79, Evalue=1e-16,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 15397; Mature: 15397

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIENNKKKIQNNSFKKKSHIKNLDNKINNNNVNKIIKEKIYINNSYKTNANKVLFDSSAL
CCCCCCHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHEEECCCCCCCCCEEEEECCCC
SSIPVYLTIELSKKKITIQELLQFKKGSILELEDNINKPLNIFINNYLIAIGELVVNNDC
CCCCEEEEEEECCCEECHHHHHHHCCCCEEEECCCCCCCEEEEHHHHHEEEEHEEECCCC
YGVQITKLLTNNVK
CCEEEEEEHHCCCC
>Mature Secondary Structure
MIENNKKKIQNNSFKKKSHIKNLDNKINNNNVNKIIKEKIYINNSYKTNANKVLFDSSAL
CCCCCCHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHEEECCCCCCCCCEEEEECCCC
SSIPVYLTIELSKKKITIQELLQFKKGSILELEDNINKPLNIFINNYLIAIGELVVNNDC
CCCCEEEEEEECCCEECHHHHHHHCCCCEEEECCCCCCCEEEEHHHHHEEEEHEEECCCC
YGVQITKLLTNNVK
CCEEEEEEHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2651416; 9097040; 9278503 [H]