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The map label for this gene is kduI

Identifier: 116496098

GI number: 116496098

Start: 2656785

End: 2657630

Strand: Direct

Name: kduI

Synonym: LSEI_2671

Alternate gene names: 116496098

Gene position: 2656785-2657630 (Clockwise)

Preceding gene: 116496097

Following gene: 116496099

Centisome position: 91.76

GC content: 45.39

Gene sequence:

>846_bases
TTGGCTTTCCACATGGCAACACGATATGCGCACAGTCCCGAAGACATTAAACACTTTGATACAACTAAATTGCGCCAAGA
ATTTTTGATGGAGAAGATTTTTAACGCGGGTGATATCCTGCTCACCTATACCTATAACGACCGAATGATCTTTGGGGGTG
TGGTCCCTACTGAATCTTCGCTGGAAATCAAATTATCGAAAGAGCTAGGGGTTGATTTCTTTCTGCAACGCCGTGAACTT
GGGGTTATTAATATTGGTGGCCCGGGATCTATTATCGTTGATGGCGATAAAGCAGCAATGGTGAAGCAGGATGGTTATTA
CATTGGCATGGGAACCAAGCAGGTTGTCTTTGCATCAGACAATCCTGCCAACCCAGCAAAATTCTATGTTGTATCCACGC
CGGCCCACAAAACTTATCCTAACAAAAAGCTGCCATTTGCAAATGCGCTGGCCAAGCCAATGGGTGATCAACAACATCTG
AATAAGCGGACGATCTACAAATATATTGACGCGTCACAAATGGCTACCTGTCAGCTGCAAATGGGCTATACCGTTCTCGA
ACCCGGCTCATCTTGGAATACCATGCCAGCCCATACACATGCACGACGAATGGAAACTTATATGTATTTTGACTTTGCCG
AACCAGACACCCGTGTCTTGCATCTCTTAGGTGAACCAACGGAAACCCGACATATCGCATTATTCAACGAGCAAGCCGTC
GTTAACCCTAGCTGGTCAATTCATTGCGGTGTTGGCACGACCAACTATGCTTTCATCTGGGCAATGTGTGGCGAAAACCA
AACCTATGATGACATGGATCAAGTACCCATGAATGAATTACGTTAG

Upstream 100 bases:

>100_bases
TGCTTTAGTGGCTTGTGTTCTTTTTGAAAACGTTTTATATTGATGAGGTAGCATAAAAGGAAACTATGTTTCTATATAAG
AAATCACGGAGGGGATTATT

Downstream 100 bases:

>100_bases
CAACAGATAACCCTATCAAAAAGGAGCAATACACATGGCTGAAATTCATCAAACTGAAGAAGAAATCCGGAAACACGAGC
AAGAACTGGATCATTTCAAA

Product: 5-keto-4-deoxyuronate isomerase

Products: NA

Alternate protein names: 5-keto-4-deoxyuronate isomerase; DKI isomerase

Number of amino acids: Translated: 281; Mature: 280

Protein sequence:

>281_residues
MAFHMATRYAHSPEDIKHFDTTKLRQEFLMEKIFNAGDILLTYTYNDRMIFGGVVPTESSLEIKLSKELGVDFFLQRREL
GVINIGGPGSIIVDGDKAAMVKQDGYYIGMGTKQVVFASDNPANPAKFYVVSTPAHKTYPNKKLPFANALAKPMGDQQHL
NKRTIYKYIDASQMATCQLQMGYTVLEPGSSWNTMPAHTHARRMETYMYFDFAEPDTRVLHLLGEPTETRHIALFNEQAV
VNPSWSIHCGVGTTNYAFIWAMCGENQTYDDMDQVPMNELR

Sequences:

>Translated_281_residues
MAFHMATRYAHSPEDIKHFDTTKLRQEFLMEKIFNAGDILLTYTYNDRMIFGGVVPTESSLEIKLSKELGVDFFLQRREL
GVINIGGPGSIIVDGDKAAMVKQDGYYIGMGTKQVVFASDNPANPAKFYVVSTPAHKTYPNKKLPFANALAKPMGDQQHL
NKRTIYKYIDASQMATCQLQMGYTVLEPGSSWNTMPAHTHARRMETYMYFDFAEPDTRVLHLLGEPTETRHIALFNEQAV
VNPSWSIHCGVGTTNYAFIWAMCGENQTYDDMDQVPMNELR
>Mature_280_residues
AFHMATRYAHSPEDIKHFDTTKLRQEFLMEKIFNAGDILLTYTYNDRMIFGGVVPTESSLEIKLSKELGVDFFLQRRELG
VINIGGPGSIIVDGDKAAMVKQDGYYIGMGTKQVVFASDNPANPAKFYVVSTPAHKTYPNKKLPFANALAKPMGDQQHLN
KRTIYKYIDASQMATCQLQMGYTVLEPGSSWNTMPAHTHARRMETYMYFDFAEPDTRVLHLLGEPTETRHIALFNEQAVV
NPSWSIHCGVGTTNYAFIWAMCGENQTYDDMDQVPMNELR

Specific function: Pectin degradation. [C]

COG id: COG3717

COG function: function code G; 5-keto 4-deoxyuronate isomerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the kduI family

Homologues:

Organism=Escherichia coli, GI1789209, Length=279, Percent_Identity=50.179211469534, Blast_Score=290, Evalue=1e-79,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): KDUI_LACC3 (Q034I2)

Other databases:

- EMBL:   CP000423
- RefSeq:   YP_807832.1
- ProteinModelPortal:   Q034I2
- SMR:   Q034I2
- STRING:   Q034I2
- GeneID:   4419267
- GenomeReviews:   CP000423_GR
- KEGG:   lca:LSEI_2671
- eggNOG:   COG3717
- HOGENOM:   HBG301328
- OMA:   MPAHTHD
- PhylomeDB:   Q034I2
- ProtClustDB:   PRK00924
- BioCyc:   LCAS321967:LSEI_2671-MONOMER
- HAMAP:   MF_00687
- InterPro:   IPR011051
- InterPro:   IPR007045
- InterPro:   IPR021120
- PIRSF:   PIRSF006625

Pfam domain/function: PF04962 KduI; SSF51182 RmlC_like_cupin

EC number: =5.3.1.17

Molecular weight: Translated: 31831; Mature: 31699

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFHMATRYAHSPEDIKHFDTTKLRQEFLMEKIFNAGDILLTYTYNDRMIFGGVVPTESS
CEEEECHHCCCCHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEEECCEEEECCCCCCCCC
LEIKLSKELGVDFFLQRRELGVINIGGPGSIIVDGDKAAMVKQDGYYIGMGTKQVVFASD
EEEEEEHHCCCEEEEECCCCCEEEECCCCCEEEECCCEEEEEECCEEEECCCEEEEEECC
NPANPAKFYVVSTPAHKTYPNKKLPFANALAKPMGDQQHLNKRTIYKYIDASQMATCQLQ
CCCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCHHHCCHHHHHEECCCCCEEEEEEE
MGYTVLEPGSSWNTMPAHTHARRMETYMYFDFAEPDTRVLHLLGEPTETRHIALFNEQAV
ECEEEECCCCCCCCCCCHHHHHHEEEEEEEEECCCCCEEEEEECCCCCCEEEEEECCCEE
VNPSWSIHCGVGTTNYAFIWAMCGENQTYDDMDQVPMNELR
ECCCCEEEECCCCCCEEEEEEECCCCCCCCCHHCCCHHHCC
>Mature Secondary Structure 
AFHMATRYAHSPEDIKHFDTTKLRQEFLMEKIFNAGDILLTYTYNDRMIFGGVVPTESS
EEEECHHCCCCHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEEECCEEEECCCCCCCCC
LEIKLSKELGVDFFLQRRELGVINIGGPGSIIVDGDKAAMVKQDGYYIGMGTKQVVFASD
EEEEEEHHCCCEEEEECCCCCEEEECCCCCEEEECCCEEEEEECCEEEECCCEEEEEECC
NPANPAKFYVVSTPAHKTYPNKKLPFANALAKPMGDQQHLNKRTIYKYIDASQMATCQLQ
CCCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCHHHCCHHHHHEECCCCCEEEEEEE
MGYTVLEPGSSWNTMPAHTHARRMETYMYFDFAEPDTRVLHLLGEPTETRHIALFNEQAV
ECEEEECCCCCCCCCCCHHHHHHEEEEEEEEECCCCCEEEEEECCCCCCEEEEEECCCEE
VNPSWSIHCGVGTTNYAFIWAMCGENQTYDDMDQVPMNELR
ECCCCEEEECCCCCCEEEEEEECCCCCCCCCHHCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA