| Definition | Lactobacillus casei ATCC 334, complete genome. |
|---|---|
| Accession | NC_008526 |
| Length | 2,895,264 |
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The map label for this gene is 116495799
Identifier: 116495799
GI number: 116495799
Start: 2348654
End: 2349265
Strand: Direct
Name: 116495799
Synonym: LSEI_2349
Alternate gene names: NA
Gene position: 2348654-2349265 (Clockwise)
Preceding gene: 116495797
Following gene: 116495800
Centisome position: 81.12
GC content: 37.09
Gene sequence:
>612_bases GTGATCTTTATAATTGACTTAAAATTTGTACTTGGTCACCAGCATAATCGATTAATAGCGATAAATGCTGTTGCACTAGA AGGAAAACCAGTAAGTTCAATTACGATTATGGACAATCTTAGTGTTCATCAGTGGCTCCGCGGAGGTGAGATGGTTTTAG TCGGTTCACATACTTTGCCAAGGGAAAATAACCAACTTCGCGAGTTATTGACCGAGCTTCAACAAAATCACGCCTGCTGT CTTATCATCAAATATATCAACAACTCATTTGAATTGTTTCCTAATTTGATCAAGTTTTCCGAAAAAATTGGACTGCCAAT TTTTCGTTTGCCTAAACAAACAACCTATCTCGAGATTATGAACGATGTGAACACTCTGTTATTCAGAGAACGACAAAGCA GACATTTAGCGATGCTTGATCTAATACATTTATTAAAGACTGACAACCCGCTTGATCAAGACTTCGATTATCTTTCTAGT CTCAAAAATATTGACCTATACAAACAAGATGTTCAAGTAGTTCAAATTATTTTTCACGCTACACTCACGCCTAGTCAACG TGTCCGAGATCTTTATTCATCCCCAGTTTACAATTCAAGTGCAACACCCTGA
Upstream 100 bases:
>100_bases AACACCTTCAAGACAAAAGAAGCTTATCATATATGTAAGCGGTTTATTTTGTGCTAAACTACAAAAACAAACTTAGTCTT TTGTTTATTTCAATAAGGTG
Downstream 100 bases:
>100_bases CGACTAGACCATAAAGGCCATGAAGACCTATTCTTGTTAGTGCTAGCTAAACAAGAAAGCAGGAATCTTCATGACCCACT CTCAGACTAACACTCACAAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 203; Mature: 203
Protein sequence:
>203_residues MIFIIDLKFVLGHQHNRLIAINAVALEGKPVSSITIMDNLSVHQWLRGGEMVLVGSHTLPRENNQLRELLTELQQNHACC LIIKYINNSFELFPNLIKFSEKIGLPIFRLPKQTTYLEIMNDVNTLLFRERQSRHLAMLDLIHLLKTDNPLDQDFDYLSS LKNIDLYKQDVQVVQIIFHATLTPSQRVRDLYSSPVYNSSATP
Sequences:
>Translated_203_residues MIFIIDLKFVLGHQHNRLIAINAVALEGKPVSSITIMDNLSVHQWLRGGEMVLVGSHTLPRENNQLRELLTELQQNHACC LIIKYINNSFELFPNLIKFSEKIGLPIFRLPKQTTYLEIMNDVNTLLFRERQSRHLAMLDLIHLLKTDNPLDQDFDYLSS LKNIDLYKQDVQVVQIIFHATLTPSQRVRDLYSSPVYNSSATP >Mature_203_residues MIFIIDLKFVLGHQHNRLIAINAVALEGKPVSSITIMDNLSVHQWLRGGEMVLVGSHTLPRENNQLRELLTELQQNHACC LIIKYINNSFELFPNLIKFSEKIGLPIFRLPKQTTYLEIMNDVNTLLFRERQSRHLAMLDLIHLLKTDNPLDQDFDYLSS LKNIDLYKQDVQVVQIIFHATLTPSQRVRDLYSSPVYNSSATP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23425; Mature: 23425
Theoretical pI: Translated: 7.27; Mature: 7.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIFIIDLKFVLGHQHNRLIAINAVALEGKPVSSITIMDNLSVHQWLRGGEMVLVGSHTLP CEEEEEEHHHHCCCCCEEEEEEEEEECCCCCCEEEEECCCCHHHHHCCCCEEEEECCCCC RENNQLRELLTELQQNHACCLIIKYINNSFELFPNLIKFSEKIGLPIFRLPKQTTYLEIM CCCHHHHHHHHHHHCCCCEEEEEHHHCCCHHHHHHHHHHHHHHCCCEEECCCCHHHHHHH NDVNTLLFRERQSRHLAMLDLIHLLKTDNPLDQDFDYLSSLKNIDLYKQDVQVVQIIFHA HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHH TLTPSQRVRDLYSSPVYNSSATP CCCHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MIFIIDLKFVLGHQHNRLIAINAVALEGKPVSSITIMDNLSVHQWLRGGEMVLVGSHTLP CEEEEEEHHHHCCCCCEEEEEEEEEECCCCCCEEEEECCCCHHHHHCCCCEEEEECCCCC RENNQLRELLTELQQNHACCLIIKYINNSFELFPNLIKFSEKIGLPIFRLPKQTTYLEIM CCCHHHHHHHHHHHCCCCEEEEEHHHCCCHHHHHHHHHHHHHHCCCEEECCCCHHHHHHH NDVNTLLFRERQSRHLAMLDLIHLLKTDNPLDQDFDYLSSLKNIDLYKQDVQVVQIIFHA HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHH TLTPSQRVRDLYSSPVYNSSATP CCCHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA