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The map label for this gene is yhbA [H]

Identifier: 116495671

GI number: 116495671

Start: 2211798

End: 2212940

Strand: Direct

Name: yhbA [H]

Synonym: LSEI_2216

Alternate gene names: 116495671

Gene position: 2211798-2212940 (Clockwise)

Preceding gene: 116495670

Following gene: 116495672

Centisome position: 76.39

GC content: 47.68

Gene sequence:

>1143_bases
ATGGATTTAAAAATGATGATTAAAGCCCATGCTAAAGAGTTGGGAATCGACAAAATTGGCTTTACGACCGCTGATAATTT
TGCCGCGCTCAAACCTAGCTTGCTCGCACAAAAAGCGGCCGGTCACACGACTGGCTTTGAACATCAAAATATCGATGAAC
GCCTATATCCTGATAAAATTTTTGACCAGCCACAAAGTATAATCGCAATTGCGTTAGCGTATCCGGCTAAAATCCATGAA
CGACCGCCGCGAACAGGACCCAAACGTGGCCGATTTGCGCGGGCCAGCTGGGGCATTGATTATCACACTGTGCTTGATCG
AAAAATGGCGTCACTTATCAAGTTTATTAAACGAACGGCAGAAAATGATCCTAACTTGCGTTTCAAACCCATGGTCGATA
CAGGTGAATTAATCGATGTTGTCGTTGCGCAACGCGCCGGCCTCGGCTTTATCGGCAAAAACGGTCTACTCATCACCCCT
GAATTTGGTTCGTATGTGTACCTCGGTGAGATCATTACCAATATTAAGTTTGCTCCTGACGAACCGATGACCTCACAGTG
CGGTGATTGTACTCGCTGTATTGATTTTTGCCCGCCAAAAGCCTTGCTTGGTGACGGTCGCATGAATGGTCAACGCTGTC
TTTCCTATCAAACCCAGACGAAAGGCTACATGGATCCAGAATTTCGGCCCATGATTCGCAACGTCCTATACGGCTGCGAT
ATCTGCCAGCAGGTTTGTCCGTTTAATAAAGGCAAGGATTTTCATATCCATCCAGAAATGGAACCCGACCCGGAAACGGT
ATTACCGGAACTGATTCCAATGTTAACGCTGACCAACAAGGACTTTAAAACGCGCTTTGGCAAACTGGCTGGTGCTTGGC
GCGGCAAAAAACCACTGCAACGTAATGCCATTATCGCACTGGTCAACCTGCATGACCGCAGCGCCATTCCTCACTTGCTC
GAGGTCATTGAGCATGATCCGCGACCAATGATTCGAGCAACTGCAGCTTGGGCCGTTGGTGAATTACAGCCATCGTCTAA
TCCTGAAATCGAGACTTTTCTCAAAACGGCCTTGGCAAAAGAAACGACGCCAGAAGCGCAAGTCGCCTTTCAGGATGCAC
TTGATCACCTAACCCAACATTGA

Upstream 100 bases:

>100_bases
CTGATAACAACAAAAAATAGCTAAATTTAATCGGCATCTTTGCGTTCCCACTCTGACTTGGCTAGAATAATGACATCAAT
GACGTTAAGAGGTGACCGGG

Downstream 100 bases:

>100_bases
GCATGTTATAATGACTCTTAAGAATACGAGGTGCCTATATTGAAACTATATCAAGGACTCACTCAGGTGCAGGTCAATGA
AGAAATGGCCGATGATACAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 380; Mature: 380

Protein sequence:

>380_residues
MDLKMMIKAHAKELGIDKIGFTTADNFAALKPSLLAQKAAGHTTGFEHQNIDERLYPDKIFDQPQSIIAIALAYPAKIHE
RPPRTGPKRGRFARASWGIDYHTVLDRKMASLIKFIKRTAENDPNLRFKPMVDTGELIDVVVAQRAGLGFIGKNGLLITP
EFGSYVYLGEIITNIKFAPDEPMTSQCGDCTRCIDFCPPKALLGDGRMNGQRCLSYQTQTKGYMDPEFRPMIRNVLYGCD
ICQQVCPFNKGKDFHIHPEMEPDPETVLPELIPMLTLTNKDFKTRFGKLAGAWRGKKPLQRNAIIALVNLHDRSAIPHLL
EVIEHDPRPMIRATAAWAVGELQPSSNPEIETFLKTALAKETTPEAQVAFQDALDHLTQH

Sequences:

>Translated_380_residues
MDLKMMIKAHAKELGIDKIGFTTADNFAALKPSLLAQKAAGHTTGFEHQNIDERLYPDKIFDQPQSIIAIALAYPAKIHE
RPPRTGPKRGRFARASWGIDYHTVLDRKMASLIKFIKRTAENDPNLRFKPMVDTGELIDVVVAQRAGLGFIGKNGLLITP
EFGSYVYLGEIITNIKFAPDEPMTSQCGDCTRCIDFCPPKALLGDGRMNGQRCLSYQTQTKGYMDPEFRPMIRNVLYGCD
ICQQVCPFNKGKDFHIHPEMEPDPETVLPELIPMLTLTNKDFKTRFGKLAGAWRGKKPLQRNAIIALVNLHDRSAIPHLL
EVIEHDPRPMIRATAAWAVGELQPSSNPEIETFLKTALAKETTPEAQVAFQDALDHLTQH
>Mature_380_residues
MDLKMMIKAHAKELGIDKIGFTTADNFAALKPSLLAQKAAGHTTGFEHQNIDERLYPDKIFDQPQSIIAIALAYPAKIHE
RPPRTGPKRGRFARASWGIDYHTVLDRKMASLIKFIKRTAENDPNLRFKPMVDTGELIDVVVAQRAGLGFIGKNGLLITP
EFGSYVYLGEIITNIKFAPDEPMTSQCGDCTRCIDFCPPKALLGDGRMNGQRCLSYQTQTKGYMDPEFRPMIRNVLYGCD
ICQQVCPFNKGKDFHIHPEMEPDPETVLPELIPMLTLTNKDFKTRFGKLAGAWRGKKPLQRNAIIALVNLHDRSAIPHLL
EVIEHDPRPMIRATAAWAVGELQPSSNPEIETFLKTALAKETTPEAQVAFQDALDHLTQH

Specific function: Unknown

COG id: COG1600

COG function: function code C; Uncharacterized Fe-S protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HEAT-like PBS-type repeats [H]

Homologues:

Organism=Escherichia coli, GI1790608, Length=344, Percent_Identity=28.4883720930233, Blast_Score=150, Evalue=9e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004453
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR011989
- InterPro:   IPR016024
- InterPro:   IPR013542
- InterPro:   IPR009051
- InterPro:   IPR004155 [H]

Pfam domain/function: PF08331 DUF1730; PF03130 HEAT_PBS [H]

EC number: NA

Molecular weight: Translated: 42571; Mature: 42571

Theoretical pI: Translated: 8.03; Mature: 8.03

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLKMMIKAHAKELGIDKIGFTTADNFAALKPSLLAQKAAGHTTGFEHQNIDERLYPDKI
CCHHHHHHHHHHHCCCCCCCCCCCCCCHHCCHHHHHHHHCCCCCCCCCCCCCHHCCCHHH
FDQPQSIIAIALAYPAKIHERPPRTGPKRGRFARASWGIDYHTVLDRKMASLIKFIKRTA
HCCCHHHEEHHHHCCHHHHCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHC
ENDPNLRFKPMVDTGELIDVVVAQRAGLGFIGKNGLLITPEFGSYVYLGEIITNIKFAPD
CCCCCEEEEECCCCHHHHHHHHHHHCCCCEECCCCEEEEECCCCEEEHHHHHHCCCCCCC
EPMTSQCGDCTRCIDFCPPKALLGDGRMNGQRCLSYQTQTKGYMDPEFRPMIRNVLYGCD
CCCHHHCCCHHHHHHHCCCHHHHCCCCCCHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHH
ICQQVCPFNKGKDFHIHPEMEPDPETVLPELIPMLTLTNKDFKTRFGKLAGAWRGKKPLQ
HHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCC
RNAIIALVNLHDRSAIPHLLEVIEHDPRPMIRATAAWAVGELQPSSNPEIETFLKTALAK
CCEEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
ETTPEAQVAFQDALDHLTQH
CCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDLKMMIKAHAKELGIDKIGFTTADNFAALKPSLLAQKAAGHTTGFEHQNIDERLYPDKI
CCHHHHHHHHHHHCCCCCCCCCCCCCCHHCCHHHHHHHHCCCCCCCCCCCCCHHCCCHHH
FDQPQSIIAIALAYPAKIHERPPRTGPKRGRFARASWGIDYHTVLDRKMASLIKFIKRTA
HCCCHHHEEHHHHCCHHHHCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHC
ENDPNLRFKPMVDTGELIDVVVAQRAGLGFIGKNGLLITPEFGSYVYLGEIITNIKFAPD
CCCCCEEEEECCCCHHHHHHHHHHHCCCCEECCCCEEEEECCCCEEEHHHHHHCCCCCCC
EPMTSQCGDCTRCIDFCPPKALLGDGRMNGQRCLSYQTQTKGYMDPEFRPMIRNVLYGCD
CCCHHHCCCHHHHHHHCCCHHHHCCCCCCHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHH
ICQQVCPFNKGKDFHIHPEMEPDPETVLPELIPMLTLTNKDFKTRFGKLAGAWRGKKPLQ
HHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCC
RNAIIALVNLHDRSAIPHLLEVIEHDPRPMIRATAAWAVGELQPSSNPEIETFLKTALAK
CCEEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
ETTPEAQVAFQDALDHLTQH
CCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]