Click here to switch to the map view.

The map label for this gene is lytR [H]

Identifier: 116495513

GI number: 116495513

Start: 2035703

End: 2036596

Strand: Direct

Name: lytR [H]

Synonym: LSEI_2050

Alternate gene names: 116495513

Gene position: 2035703-2036596 (Clockwise)

Preceding gene: 116495507

Following gene: 116495516

Centisome position: 70.31

GC content: 43.74

Gene sequence:

>894_bases
ATGAAAAAGATCCTAGTACGCGTTTTACTCGTGCTACTTCTTGCGGCTCTTGGGTTTGGCGGTTTCGTGTATTATATGGT
ACATAATTCCACGTCCCAGATTTATTCTTATAATAAGAAGACTAATAAATCGTCAGACGATAAGACTGCTAGCAAAAAGT
CCGTTGCTTACTTGTTACTCGGTACAGATACTGGGGAGCTCGGAAGATCATATAAGGGCCGTACAGATACTATGATTGTT
GTTGTAGTCAATCCTAAATCAAAAACAACGACGATGGTCTCCGTACCTCGTGACACTAAAGTTGACTTTGACGATGTTAC
TATCAAGATTAATGCAGCATATTCTTATGGCTCTTCAGATACAGCTATGTCAGCTGTCGAGAAGCTTTTGAACATTAAAT
TAGACGGTTATATGCTTGTAAACATGAAAGGCCTTGAACAGCTGGTTGACGCTGTTGGCGGCGTGACAGTAACGTCCCCA
CTCAGTTTCGACTATGAAGGCAAATCATTCGTCAAAGGCCAATCCTATGATCTCTCGGGCAGCGATGCATTGAAGTTCTC
GCGGATGCGCTATGACGATCCACAAGGCGACTACGGGCGGCAGATGCGTCAACAACAAATCCTCACCGCAGTTATCGGCA
AAGTTAAGTCAAACCCGACAACCGTTCTAAGCCAAAAGTTCCTAGATGCAGTTGGTAAAAATGTTCGAACCGATGTGTCT
CTGGGTTCAGTTAAGAACTTAGCAATGGAGTACCGCGATGCTGGCAATACGATCAAAAGCGATCAGCTACACGGTACAGG
TCAGAATATTGATGGGCAAGATTATGAAGTGATGTCCGATTCGGAGATTACACGCGTGCATAATCTGCTGCAGAATGCAA
TTGACGCAAAATAA

Upstream 100 bases:

>100_bases
TTAACGATTTGCAATAAAGCCCCATCAGCCGCGCGAGATTCCCAACTTTGCGGTATAATACTGGAATATTCGGACACTAT
GGAGGAAATGAGGTTTAGAA

Downstream 100 bases:

>100_bases
TAAAGAAAAAGAGCTGTACACTGATGTTGAGAGATCAACATCAGTGTACAGCTCTTTTATTTTGGGCCTACGCTTTCTGG
TGTTGAGAAATAATCAGCAC

Product: transcriptional regulator

Products: NA

Alternate protein names: Membrane-bound protein lytR [H]

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MKKILVRVLLVLLLAALGFGGFVYYMVHNSTSQIYSYNKKTNKSSDDKTASKKSVAYLLLGTDTGELGRSYKGRTDTMIV
VVVNPKSKTTTMVSVPRDTKVDFDDVTIKINAAYSYGSSDTAMSAVEKLLNIKLDGYMLVNMKGLEQLVDAVGGVTVTSP
LSFDYEGKSFVKGQSYDLSGSDALKFSRMRYDDPQGDYGRQMRQQQILTAVIGKVKSNPTTVLSQKFLDAVGKNVRTDVS
LGSVKNLAMEYRDAGNTIKSDQLHGTGQNIDGQDYEVMSDSEITRVHNLLQNAIDAK

Sequences:

>Translated_297_residues
MKKILVRVLLVLLLAALGFGGFVYYMVHNSTSQIYSYNKKTNKSSDDKTASKKSVAYLLLGTDTGELGRSYKGRTDTMIV
VVVNPKSKTTTMVSVPRDTKVDFDDVTIKINAAYSYGSSDTAMSAVEKLLNIKLDGYMLVNMKGLEQLVDAVGGVTVTSP
LSFDYEGKSFVKGQSYDLSGSDALKFSRMRYDDPQGDYGRQMRQQQILTAVIGKVKSNPTTVLSQKFLDAVGKNVRTDVS
LGSVKNLAMEYRDAGNTIKSDQLHGTGQNIDGQDYEVMSDSEITRVHNLLQNAIDAK
>Mature_297_residues
MKKILVRVLLVLLLAALGFGGFVYYMVHNSTSQIYSYNKKTNKSSDDKTASKKSVAYLLLGTDTGELGRSYKGRTDTMIV
VVVNPKSKTTTMVSVPRDTKVDFDDVTIKINAAYSYGSSDTAMSAVEKLLNIKLDGYMLVNMKGLEQLVDAVGGVTVTSP
LSFDYEGKSFVKGQSYDLSGSDALKFSRMRYDDPQGDYGRQMRQQQILTAVIGKVKSNPTTVLSQKFLDAVGKNVRTDVS
LGSVKNLAMEYRDAGNTIKSDQLHGTGQNIDGQDYEVMSDSEITRVHNLLQNAIDAK

Specific function: Attenuator role for operon expression [H]

COG id: COG1316

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LytR/CpsA/Psr regulatory protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004474 [H]

Pfam domain/function: PF03816 LytR_cpsA_psr [H]

EC number: NA

Molecular weight: Translated: 32601; Mature: 32601

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKILVRVLLVLLLAALGFGGFVYYMVHNSTSQIYSYNKKTNKSSDDKTASKKSVAYLLL
CHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHEEECCCCCCCCCCHHHCCCCEEEEEE
GTDTGELGRSYKGRTDTMIVVVVNPKSKTTTMVSVPRDTKVDFDDVTIKINAAYSYGSSD
ECCCHHHCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEEEEEECCCCH
TAMSAVEKLLNIKLDGYMLVNMKGLEQLVDAVGGVTVTSPLSFDYEGKSFVKGQSYDLSG
HHHHHHHHHHCEEECCEEEEEHHHHHHHHHHHCCEEEECCCCCCCCCCCEECCCCCCCCC
SDALKFSRMRYDDPQGDYGRQMRQQQILTAVIGKVKSNPTTVLSQKFLDAVGKNVRTDVS
CCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCC
LGSVKNLAMEYRDAGNTIKSDQLHGTGQNIDGQDYEVMSDSEITRVHNLLQNAIDAK
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKILVRVLLVLLLAALGFGGFVYYMVHNSTSQIYSYNKKTNKSSDDKTASKKSVAYLLL
CHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHEEECCCCCCCCCCHHHCCCCEEEEEE
GTDTGELGRSYKGRTDTMIVVVVNPKSKTTTMVSVPRDTKVDFDDVTIKINAAYSYGSSD
ECCCHHHCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEEEEEECCCCH
TAMSAVEKLLNIKLDGYMLVNMKGLEQLVDAVGGVTVTSPLSFDYEGKSFVKGQSYDLSG
HHHHHHHHHHCEEECCEEEEEHHHHHHHHHHHCCEEEECCCCCCCCCCCEECCCCCCCCC
SDALKFSRMRYDDPQGDYGRQMRQQQILTAVIGKVKSNPTTVLSQKFLDAVGKNVRTDVS
CCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCC
LGSVKNLAMEYRDAGNTIKSDQLHGTGQNIDGQDYEVMSDSEITRVHNLLQNAIDAK
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12663927 [H]