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The map label for this gene is ynbA [H]

Identifier: 116495465

GI number: 116495465

Start: 1973634

End: 1974929

Strand: Direct

Name: ynbA [H]

Synonym: LSEI_1999

Alternate gene names: 116495465

Gene position: 1973634-1974929 (Clockwise)

Preceding gene: 116495464

Following gene: 116495468

Centisome position: 68.17

GC content: 50.31

Gene sequence:

>1296_bases
ATGACTGAACAATTATCCAATGAACCTCAATCAGAAAATGTTTTAATTACCGGTATCTCGCGTCAGCAGCCCGACTTCGA
TTACACCATGACCGAACTCGGCGAACTTGCCAAAGCGGATAACTACACCGTCGTCGGCGAAGTCCGCCAAAGTCTCGATC
GCGCCGCAGCCGCCACCTATTTTGGCAGTGGCAAAGTCGATGAGATTCGCGAACTTGCTGACGTCAAAAACGCAACGACT
ATCATCATCAACGATGAACTGTCGCCATCACAACTCCATAATCTCGAAAAGCAAACCAAACTGCACGTGATTGATCGAAC
CCAGCTGATCCTAGATATCTTCGCTGATCGTGCCCGTAGTAAGGCAGCCAAAACCCAAGTTGAAATTGCCCAACTGCAAT
ACGCCTTACCGCGGCTGCATCCCAGCGCCAACCGGCTTGATCAGCAGGTTGGTGGTGGTGCTGGTTTTGCCACACGTGGT
TCAGGGGAAACGCAACTTGAACTTGATCGACGGGTTCTCAACAAGCGGATCAGTCATCTGCGTCGCGAACTCAAAGACGC
GAGTGTTGGTGATCAGGTCCGCCGCGCCCGGCGCGAAGGTAATGACATCCCCGTCGTTGCACTAGTCGGTTACACCAACG
CTGGCAAAAGCACCACGATGAATGGCTTACTCAATCTTTTTGCCGACCGTCCGGAAGACAAACAAGTTTTTGAAAAAGAC
ATGCTCTTTGCCACCCTGGACACCAGTGTCCGGCAACTCACCTTGCCAGACAATCGCAAGTTCCTGCTCAGCGACACAGT
CGGCTTCGTCTCAAAACTGCCACATAATTTGATTGACAGTTTTAAAGCCACCCTCGCTGAAGCAGCCAACGCCGATCTTT
TGATTCAAGTCGTGGACTACTCCGACGAAAACTATCCGGAAATGATGGCCATCACTGAAAAGACGTTGAAAGAAGTTGGC
ATCGAAAATATTCCGATGATTGAAGCTTACAACAAAGCCGATTTGCGTGAAGGCACCCGCTATCCTGAAGTCACTGGCCA
ACGCATCGTGTATTCCGCCCGCGACAAAAACTCGTTGGAAGCCCTGACCCGTCTGATCAAAGCCGACATCTTCGGCCAAG
ACGAAGAACACACCTACCTGATCCCATTTGATCAAGGTCAACTCGTCAGTTATCTGAATCAGGAAACTGTCGTCAAGGCC
ACTGACTACCGCGAAGATGGCACGCTTATTACCGCTGTCGTCAACCCAGTACAAAAAGGTAAGTTGGCCCGATTCGCTGT
AAAAGAAGAAGTTTAA

Upstream 100 bases:

>100_bases
AAAGGGGTGAATCGCCATGCGGTTACGTCAGGCGCACCATGAATGATGATCTGCTAGCACCGATCCGCGGCGACCAAGCC
CGGATCAATGAAAGGAATTT

Downstream 100 bases:

>100_bases
CCCCCTTTTGCTGGGAAAGCACAAAAGAAGAGCACCAACGGCAATCAGATTGCCGTTGGTGCTCTTTTCTTTTTGTCTAG
GTTGCTCTGGTTAGACGCAC

Product: GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 431; Mature: 430

Protein sequence:

>431_residues
MTEQLSNEPQSENVLITGISRQQPDFDYTMTELGELAKADNYTVVGEVRQSLDRAAAATYFGSGKVDEIRELADVKNATT
IIINDELSPSQLHNLEKQTKLHVIDRTQLILDIFADRARSKAAKTQVEIAQLQYALPRLHPSANRLDQQVGGGAGFATRG
SGETQLELDRRVLNKRISHLRRELKDASVGDQVRRARREGNDIPVVALVGYTNAGKSTTMNGLLNLFADRPEDKQVFEKD
MLFATLDTSVRQLTLPDNRKFLLSDTVGFVSKLPHNLIDSFKATLAEAANADLLIQVVDYSDENYPEMMAITEKTLKEVG
IENIPMIEAYNKADLREGTRYPEVTGQRIVYSARDKNSLEALTRLIKADIFGQDEEHTYLIPFDQGQLVSYLNQETVVKA
TDYREDGTLITAVVNPVQKGKLARFAVKEEV

Sequences:

>Translated_431_residues
MTEQLSNEPQSENVLITGISRQQPDFDYTMTELGELAKADNYTVVGEVRQSLDRAAAATYFGSGKVDEIRELADVKNATT
IIINDELSPSQLHNLEKQTKLHVIDRTQLILDIFADRARSKAAKTQVEIAQLQYALPRLHPSANRLDQQVGGGAGFATRG
SGETQLELDRRVLNKRISHLRRELKDASVGDQVRRARREGNDIPVVALVGYTNAGKSTTMNGLLNLFADRPEDKQVFEKD
MLFATLDTSVRQLTLPDNRKFLLSDTVGFVSKLPHNLIDSFKATLAEAANADLLIQVVDYSDENYPEMMAITEKTLKEVG
IENIPMIEAYNKADLREGTRYPEVTGQRIVYSARDKNSLEALTRLIKADIFGQDEEHTYLIPFDQGQLVSYLNQETVVKA
TDYREDGTLITAVVNPVQKGKLARFAVKEEV
>Mature_430_residues
TEQLSNEPQSENVLITGISRQQPDFDYTMTELGELAKADNYTVVGEVRQSLDRAAAATYFGSGKVDEIRELADVKNATTI
IINDELSPSQLHNLEKQTKLHVIDRTQLILDIFADRARSKAAKTQVEIAQLQYALPRLHPSANRLDQQVGGGAGFATRGS
GETQLELDRRVLNKRISHLRRELKDASVGDQVRRARREGNDIPVVALVGYTNAGKSTTMNGLLNLFADRPEDKQVFEKDM
LFATLDTSVRQLTLPDNRKFLLSDTVGFVSKLPHNLIDSFKATLAEAANADLLIQVVDYSDENYPEMMAITEKTLKEVGI
ENIPMIEAYNKADLREGTRYPEVTGQRIVYSARDKNSLEALTRLIKADIFGQDEEHTYLIPFDQGQLVSYLNQETVVKAT
DYREDGTLITAVVNPVQKGKLARFAVKEEV

Specific function: Unknown

COG id: COG2262

COG function: function code R; GTPases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI310124269, Length=256, Percent_Identity=31.640625, Blast_Score=112, Evalue=7e-25,
Organism=Homo sapiens, GI310124267, Length=256, Percent_Identity=31.640625, Blast_Score=112, Evalue=7e-25,
Organism=Homo sapiens, GI310124171, Length=256, Percent_Identity=31.640625, Blast_Score=112, Evalue=7e-25,
Organism=Homo sapiens, GI310124169, Length=256, Percent_Identity=31.640625, Blast_Score=112, Evalue=7e-25,
Organism=Homo sapiens, GI310133118, Length=262, Percent_Identity=31.6793893129771, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI310133116, Length=262, Percent_Identity=31.6793893129771, Blast_Score=110, Evalue=4e-24,
Organism=Escherichia coli, GI1790615, Length=370, Percent_Identity=37.2972972972973, Blast_Score=219, Evalue=4e-58,
Organism=Caenorhabditis elegans, GI17561038, Length=281, Percent_Identity=32.7402135231317, Blast_Score=122, Evalue=5e-28,
Organism=Drosophila melanogaster, GI24650079, Length=311, Percent_Identity=31.8327974276527, Blast_Score=126, Evalue=3e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016496
- InterPro:   IPR006073
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 48188; Mature: 48057

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEQLSNEPQSENVLITGISRQQPDFDYTMTELGELAKADNYTVVGEVRQSLDRAAAATY
CCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHH
FGSGKVDEIRELADVKNATTIIINDELSPSQLHNLEKQTKLHVIDRTQLILDIFADRARS
CCCCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHH
KAAKTQVEIAQLQYALPRLHPSANRLDQQVGGGAGFATRGSGETQLELDRRVLNKRISHL
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
RRELKDASVGDQVRRARREGNDIPVVALVGYTNAGKSTTMNGLLNLFADRPEDKQVFEKD
HHHHHCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHH
MLFATLDTSVRQLTLPDNRKFLLSDTVGFVSKLPHNLIDSFKATLAEAANADLLIQVVDY
HHHHHHCCCCEEEECCCCCEEEEHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEC
SDENYPEMMAITEKTLKEVGIENIPMIEAYNKADLREGTRYPEVTGQRIVYSARDKNSLE
CCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCHHHHCCCCCCCCCCCEEEEECCCCHHHH
ALTRLIKADIFGQDEEHTYLIPFDQGQLVSYLNQETVVKATDYREDGTLITAVVNPVQKG
HHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCCEEEECCCCCCCCEEEEECCHHHCC
KLARFAVKEEV
CHHHHHHHCCC
>Mature Secondary Structure 
TEQLSNEPQSENVLITGISRQQPDFDYTMTELGELAKADNYTVVGEVRQSLDRAAAATY
CCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHH
FGSGKVDEIRELADVKNATTIIINDELSPSQLHNLEKQTKLHVIDRTQLILDIFADRARS
CCCCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHH
KAAKTQVEIAQLQYALPRLHPSANRLDQQVGGGAGFATRGSGETQLELDRRVLNKRISHL
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
RRELKDASVGDQVRRARREGNDIPVVALVGYTNAGKSTTMNGLLNLFADRPEDKQVFEKD
HHHHHCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHH
MLFATLDTSVRQLTLPDNRKFLLSDTVGFVSKLPHNLIDSFKATLAEAANADLLIQVVDY
HHHHHHCCCCEEEECCCCCEEEEHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEC
SDENYPEMMAITEKTLKEVGIENIPMIEAYNKADLREGTRYPEVTGQRIVYSARDKNSLE
CCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCHHHHCCCCCCCCCCCEEEEECCCCHHHH
ALTRLIKADIFGQDEEHTYLIPFDQGQLVSYLNQETVVKATDYREDGTLITAVVNPVQKG
HHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCCEEEECCCCCCCCEEEEECCHHHCC
KLARFAVKEEV
CHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]