| Definition | Lactobacillus casei ATCC 334, complete genome. |
|---|---|
| Accession | NC_008526 |
| Length | 2,895,264 |
Click here to switch to the map view.
The map label for this gene is 116494991
Identifier: 116494991
GI number: 116494991
Start: 1509856
End: 1510251
Strand: Direct
Name: 116494991
Synonym: LSEI_1508
Alternate gene names: NA
Gene position: 1509856-1510251 (Clockwise)
Preceding gene: 116494990
Following gene: 116495005
Centisome position: 52.15
GC content: 38.13
Gene sequence:
>396_bases ATGGGATTAATAAAGAATCTTGGGAAAATGGCCAGGCAGTCATTAGTAAGTGACGACACTGTACACGCAGTAATATCTCC AATTGTTCAGAAGACTACAGAAGCTGTAGAAAAGACCGTGGACAACAACGTTAAAGTCCCCAATGTATTAGGAATGCAGG CAAAGGAAGCAAAGGATGTATTAGAGTCGCTTGGCTTAAAAATTTCTATTTTACAGCAACGAACACCAAACAAAAAATAT GCACAATATGCACCTGGAGAAGTTGTTGAGATGGAGTATGACACACCAAGTTTAATTTTAAAAGGTGTTCACAAAGGTAG CTTAGTCAAGATTTACACCGCTGATGAGAGCGTACTTACTAAAAGTAGATCTTGGCGTTATAAGTTACTGAGTTAA
Upstream 100 bases:
>100_bases TATGAAACTATTTTCAACAATTTCCAAAGCTAACATAAAGTAATAAAATAAGAGCTAGCTTAGTGGACCAACAGAAGACA CTAGAAAGTGGGTTAACAAG
Downstream 100 bases:
>100_bases TTTGGCTCTGCGTCAACTGGTGTTGAAGAATAAATTTATCATTTGAGGCGGTTCTCCATTTGGGGAGCCGTCTTTGTCAT GTTATGCCGTGATTTGGTAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 131; Mature: 130
Protein sequence:
>131_residues MGLIKNLGKMARQSLVSDDTVHAVISPIVQKTTEAVEKTVDNNVKVPNVLGMQAKEAKDVLESLGLKISILQQRTPNKKY AQYAPGEVVEMEYDTPSLILKGVHKGSLVKIYTADESVLTKSRSWRYKLLS
Sequences:
>Translated_131_residues MGLIKNLGKMARQSLVSDDTVHAVISPIVQKTTEAVEKTVDNNVKVPNVLGMQAKEAKDVLESLGLKISILQQRTPNKKY AQYAPGEVVEMEYDTPSLILKGVHKGSLVKIYTADESVLTKSRSWRYKLLS >Mature_130_residues GLIKNLGKMARQSLVSDDTVHAVISPIVQKTTEAVEKTVDNNVKVPNVLGMQAKEAKDVLESLGLKISILQQRTPNKKYA QYAPGEVVEMEYDTPSLILKGVHKGSLVKIYTADESVLTKSRSWRYKLLS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14513; Mature: 14382
Theoretical pI: Translated: 9.97; Mature: 9.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGLIKNLGKMARQSLVSDDTVHAVISPIVQKTTEAVEKTVDNNVKVPNVLGMQAKEAKDV CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH LESLGLKISILQQRTPNKKYAQYAPGEVVEMEYDTPSLILKGVHKGSLVKIYTADESVLT HHHCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCHHHHHHCCCCCCEEEEEECCHHHHH KSRSWRYKLLS CCCCCEEEECC >Mature Secondary Structure GLIKNLGKMARQSLVSDDTVHAVISPIVQKTTEAVEKTVDNNVKVPNVLGMQAKEAKDV CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH LESLGLKISILQQRTPNKKYAQYAPGEVVEMEYDTPSLILKGVHKGSLVKIYTADESVLT HHHCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCHHHHHHCCCCCCEEEEEECCHHHHH KSRSWRYKLLS CCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA