Click here to switch to the map view.

The map label for this gene is smf [H]

Identifier: 116494885

GI number: 116494885

Start: 1385986

End: 1386801

Strand: Direct

Name: smf [H]

Synonym: LSEI_1399

Alternate gene names: 116494885

Gene position: 1385986-1386801 (Clockwise)

Preceding gene: 116494884

Following gene: 116494886

Centisome position: 47.87

GC content: 50.25

Gene sequence:

>816_bases
ATGACACTGCGCAATTTTTTACTAGCATGGCACATTGCCACACGCCAGAATCCGCGGATGGCAGTTGCTTTAGAACAAGC
TATCCGAGGAAAAGATGATCTCGCACCGTTTCAGGAAGAACTCAAGAAACGTTTGACTGACCAGTTTAGTCAACAATTAA
TTGCTGCCAAACACGTGCCGTTTATGACGTATGTTGATACTGCTTATCCACCACGATTGCGGGAAATTCCGCAGCCGCCG
TTGGTGCTTTTTTATCGTGGGCAGTTAGGTCTGTTGAATCAATTAACGTTAGGGATTGTTGGTTCGCGGCGTGCAACCGG
CTATTCAGCAACGGCGCTGGCGCAGTTATTGCCGCAACTACCGTCAATGGTGATTGCAAGTGGACTAGCAGCAGGAGCTG
ATGCGATGGCGCATGAGGCAGCCCTCAGTGCCCGACTGCCAACGATTGCAGTGATTGCCAACGGCCTTGATCAGGTGTAT
CCTGCCAAGAACCGCGATTTGCAGGTGCAGATTGCGCATGTTGGGCTTGTTTTAAGTGAGTATCCACCAGCAACCGGCCC
GCAGCGGTTTCAATTTGTCGCTCGCAATCGGATTATTGCCGGTATTGCCCATGGTGTGATGGTAACTGAGGCGGAGATGA
AAAGCGGCAGTCTCATCACGGCTAACTATGCTTTGCAACATAATCGCGAAGTTTTTGCGTTGCCTAATCGAATTGATGCG
CCTTTGGGAGCAGGTACAAATGCGCTGATTCAGGCAGGAGCGGCGTTGGTGACTGGTCCAGAGACGTTGGTAGAAAACTT
GAATTTTTACCCTTGA

Upstream 100 bases:

>100_bases
CGCAGTTTTGGGCCTGTCCGTGATCGACTGCGCTCTTAGTGCTTCATTGAGTGTGTCGATGTCGTGTTTGCGTAGTTTAT
TTGCGGGAGGACGACCAACA

Downstream 100 bases:

>100_bases
GGTGCACATCTTTGCTTACTTTATAGTAGAAAAAATTTCTTTTGATTTGACAAGAGCAAAATGACTAGCTTATGATAGCA
ACTGTTTTGAGTCAGCAGGT

Product: Rossmann fold nucleotide-binding protein for DNA uptake

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 270

Protein sequence:

>271_residues
MTLRNFLLAWHIATRQNPRMAVALEQAIRGKDDLAPFQEELKKRLTDQFSQQLIAAKHVPFMTYVDTAYPPRLREIPQPP
LVLFYRGQLGLLNQLTLGIVGSRRATGYSATALAQLLPQLPSMVIASGLAAGADAMAHEAALSARLPTIAVIANGLDQVY
PAKNRDLQVQIAHVGLVLSEYPPATGPQRFQFVARNRIIAGIAHGVMVTEAEMKSGSLITANYALQHNREVFALPNRIDA
PLGAGTNALIQAGAALVTGPETLVENLNFYP

Sequences:

>Translated_271_residues
MTLRNFLLAWHIATRQNPRMAVALEQAIRGKDDLAPFQEELKKRLTDQFSQQLIAAKHVPFMTYVDTAYPPRLREIPQPP
LVLFYRGQLGLLNQLTLGIVGSRRATGYSATALAQLLPQLPSMVIASGLAAGADAMAHEAALSARLPTIAVIANGLDQVY
PAKNRDLQVQIAHVGLVLSEYPPATGPQRFQFVARNRIIAGIAHGVMVTEAEMKSGSLITANYALQHNREVFALPNRIDA
PLGAGTNALIQAGAALVTGPETLVENLNFYP
>Mature_270_residues
TLRNFLLAWHIATRQNPRMAVALEQAIRGKDDLAPFQEELKKRLTDQFSQQLIAAKHVPFMTYVDTAYPPRLREIPQPPL
VLFYRGQLGLLNQLTLGIVGSRRATGYSATALAQLLPQLPSMVIASGLAAGADAMAHEAALSARLPTIAVIANGLDQVYP
AKNRDLQVQIAHVGLVLSEYPPATGPQRFQFVARNRIIAGIAHGVMVTEAEMKSGSLITANYALQHNREVFALPNRIDAP
LGAGTNALIQAGAALVTGPETLVENLNFYP

Specific function: Unknown

COG id: COG0758

COG function: function code LU; Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smf family [H]

Homologues:

Organism=Escherichia coli, GI48994932, Length=204, Percent_Identity=41.6666666666667, Blast_Score=143, Evalue=9e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003488
- InterPro:   IPR010994 [H]

Pfam domain/function: PF02481 DNA_processg_A [H]

EC number: NA

Molecular weight: Translated: 29375; Mature: 29244

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLRNFLLAWHIATRQNPRMAVALEQAIRGKDDLAPFQEELKKRLTDQFSQQLIAAKHVP
CCHHHHHHHEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
FMTYVDTAYPPRLREIPQPPLVLFYRGQLGLLNQLTLGIVGSRRATGYSATALAQLLPQL
EEEEECCCCCCHHHHCCCCCEEEEECCCCCCHHHHHHHEECCCCCCCCHHHHHHHHHHHH
PSMVIASGLAAGADAMAHEAALSARLPTIAVIANGLDQVYPAKNRDLQVQIAHVGLVLSE
HHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHCHHHHCCCCCCCEEEEEEEEEEHHHC
YPPATGPQRFQFVARNRIIAGIAHGVMVTEAEMKSGSLITANYALQHNREVFALPNRIDA
CCCCCCHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCEEEEEEHHHCCCEEEECCCCCCC
PLGAGTNALIQAGAALVTGPETLVENLNFYP
CCCCCCHHHHHCCCCEEECHHHHHHCCCCCC
>Mature Secondary Structure 
TLRNFLLAWHIATRQNPRMAVALEQAIRGKDDLAPFQEELKKRLTDQFSQQLIAAKHVP
CHHHHHHHEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
FMTYVDTAYPPRLREIPQPPLVLFYRGQLGLLNQLTLGIVGSRRATGYSATALAQLLPQL
EEEEECCCCCCHHHHCCCCCEEEEECCCCCCHHHHHHHEECCCCCCCCHHHHHHHHHHHH
PSMVIASGLAAGADAMAHEAALSARLPTIAVIANGLDQVYPAKNRDLQVQIAHVGLVLSE
HHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHCHHHHCCCCCCCEEEEEEEEEEHHHC
YPPATGPQRFQFVARNRIIAGIAHGVMVTEAEMKSGSLITANYALQHNREVFALPNRIDA
CCCCCCHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCEEEEEEHHHCCCEEEECCCCCCC
PLGAGTNALIQAGAALVTGPETLVENLNFYP
CCCCCCHHHHHCCCCEEECHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]