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The map label for this gene is yqeN [H]

Identifier: 116494815

GI number: 116494815

Start: 1310902

End: 1311945

Strand: Direct

Name: yqeN [H]

Synonym: LSEI_1326

Alternate gene names: 116494815

Gene position: 1310902-1311945 (Clockwise)

Preceding gene: 116494814

Following gene: 116494817

Centisome position: 45.28

GC content: 48.85

Gene sequence:

>1044_bases
ATGCAGGTCCGTGATTTTATCAAACATCTTAAGAATGGCGAACGACCGCCGCTGACATTGATTCTCGGTGAAGAATCCGC
ATTGCGTCAGCAGGCACAACACGCGATAGCCAGCATGATTCCGGAAGATCAACAGGCCATGAACTTTGGCCGCTATGATA
TGCAGCAAACGCCTGTTGGTGCAGCCTTGAATGATGCGACCTCGATGCCCTTTTTTGGGGATTATCGGGAAGTCGTTATT
GACGATCCGTATTTTTTGACAGGCGAAAAAAATGCCGACAAAATCGATCATGATCTTGCTGGTTTGCAGGCTTATTTTGA
GAACCCAGTACCGTCAACGATGATGGTCATCATCGCGCCTTATAAGAAACTTGATGAACGGAAAAGGTTGACCAAGGCAT
TGAAAAAGGCGGCGCTCATTGTGAATGCAGCACCGCTTGATGAACGGGAGGCGCGTGCTGCTTTAGCCCAAACATTTAAG
AAGCACCAAGTGACCATTGATGCACCGGCATTGGATACCCTTGTGCAGCGCACTAACGGCCAGTATTCGATCATGATGGG
TGAGGTTCGCAAACTGCTGACCTATGCCAGTGATGGCAGCCCGCTGACCGTTGCCGCGGTCGAAGCCCTAGTACCTAAGC
AGCTCAATGATCGGGTGTTTGACTTGGTGACTGATGTTTTGCGCAAAAATGCTGCGGCCGCTTTGGCGCTGTATCGTGAT
TTATTGGCTCAGCGTGAAGAACCCATTCGTTTGAACGCATTGATGCTAGGCCAGTTTCGACTATTGCTGCAGGTGAAATT
ATTAGCAAAAAAAGGGTATAGTCAAGGCGATATTGCTGGCACCCTCAAGGCCCATCCATATCGGGTTAAATTAGCCATGC
GGCAAGTGGATCGCTTACCTTATCAGCAGCTCGCGACTGCCTACAGTGGCTTGGTTGATACTGAAACAGCAATGAAAACG
GGAACTATCGATAAGGCGTTGGCTTTTGAACTATTTATGCTAAAGTACACAGGACAGCAGTCTGGCAAGCATGTGCGCGG
TTAA

Upstream 100 bases:

>100_bases
GCTAGCACTAGCGAGCGAGGAATGCTGTGGGTTGAGCCGGGGCAAAACAAACAGGAAGATCAGCTTTTTGGCTGGTTACC
AACAAAGGAGCAAAGCAGCA

Downstream 100 bases:

>100_bases
GCAACATCGTGCGGATTGCAAATGATCGTTAGACGCAAAAATCCCCTCGGATAGAAACCCGAGGGGATTTTATTTGGCAT
GACGCCTTAATTACTTGTTA

Product: DNA polymerase III, delta subunit

Products: diphosphate; DNAn+1

Alternate protein names: NA

Number of amino acids: Translated: 347; Mature: 347

Protein sequence:

>347_residues
MQVRDFIKHLKNGERPPLTLILGEESALRQQAQHAIASMIPEDQQAMNFGRYDMQQTPVGAALNDATSMPFFGDYREVVI
DDPYFLTGEKNADKIDHDLAGLQAYFENPVPSTMMVIIAPYKKLDERKRLTKALKKAALIVNAAPLDEREARAALAQTFK
KHQVTIDAPALDTLVQRTNGQYSIMMGEVRKLLTYASDGSPLTVAAVEALVPKQLNDRVFDLVTDVLRKNAAAALALYRD
LLAQREEPIRLNALMLGQFRLLLQVKLLAKKGYSQGDIAGTLKAHPYRVKLAMRQVDRLPYQQLATAYSGLVDTETAMKT
GTIDKALAFELFMLKYTGQQSGKHVRG

Sequences:

>Translated_347_residues
MQVRDFIKHLKNGERPPLTLILGEESALRQQAQHAIASMIPEDQQAMNFGRYDMQQTPVGAALNDATSMPFFGDYREVVI
DDPYFLTGEKNADKIDHDLAGLQAYFENPVPSTMMVIIAPYKKLDERKRLTKALKKAALIVNAAPLDEREARAALAQTFK
KHQVTIDAPALDTLVQRTNGQYSIMMGEVRKLLTYASDGSPLTVAAVEALVPKQLNDRVFDLVTDVLRKNAAAALALYRD
LLAQREEPIRLNALMLGQFRLLLQVKLLAKKGYSQGDIAGTLKAHPYRVKLAMRQVDRLPYQQLATAYSGLVDTETAMKT
GTIDKALAFELFMLKYTGQQSGKHVRG
>Mature_347_residues
MQVRDFIKHLKNGERPPLTLILGEESALRQQAQHAIASMIPEDQQAMNFGRYDMQQTPVGAALNDATSMPFFGDYREVVI
DDPYFLTGEKNADKIDHDLAGLQAYFENPVPSTMMVIIAPYKKLDERKRLTKALKKAALIVNAAPLDEREARAALAQTFK
KHQVTIDAPALDTLVQRTNGQYSIMMGEVRKLLTYASDGSPLTVAAVEALVPKQLNDRVFDLVTDVLRKNAAAALALYRD
LLAQREEPIRLNALMLGQFRLLLQVKLLAKKGYSQGDIAGTLKAHPYRVKLAMRQVDRLPYQQLATAYSGLVDTETAMKT
GTIDKALAFELFMLKYTGQQSGKHVRG

Specific function: Unknown

COG id: COG1466

COG function: function code L; DNA polymerase III, delta subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008921
- InterPro:   IPR010372
- InterPro:   IPR005790 [H]

Pfam domain/function: PF06144 DNA_pol3_delta [H]

EC number: 2.7.7.7

Molecular weight: Translated: 38676; Mature: 38676

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVRDFIKHLKNGERPPLTLILGEESALRQQAQHAIASMIPEDQQAMNFGRYDMQQTPVG
CCHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCC
AALNDATSMPFFGDYREVVIDDPYFLTGEKNADKIDHDLAGLQAYFENPVPSTMMVIIAP
CHHCCCCCCCCCCCCCCEEECCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEC
YKKLDERKRLTKALKKAALIVNAAPLDEREARAALAQTFKKHQVTIDAPALDTLVQRTNG
HHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHCCEEECCHHHHHHHHHCCC
QYSIMMGEVRKLLTYASDGSPLTVAAVEALVPKQLNDRVFDLVTDVLRKNAAAALALYRD
CEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLAQREEPIRLNALMLGQFRLLLQVKLLAKKGYSQGDIAGTLKAHPYRVKLAMRQVDRLP
HHHCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHCCC
YQQLATAYSGLVDTETAMKTGTIDKALAFELFMLKYTGQQSGKHVRG
HHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MQVRDFIKHLKNGERPPLTLILGEESALRQQAQHAIASMIPEDQQAMNFGRYDMQQTPVG
CCHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCC
AALNDATSMPFFGDYREVVIDDPYFLTGEKNADKIDHDLAGLQAYFENPVPSTMMVIIAP
CHHCCCCCCCCCCCCCCEEECCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEC
YKKLDERKRLTKALKKAALIVNAAPLDEREARAALAQTFKKHQVTIDAPALDTLVQRTNG
HHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHCCEEECCHHHHHHHHHCCC
QYSIMMGEVRKLLTYASDGSPLTVAAVEALVPKQLNDRVFDLVTDVLRKNAAAALALYRD
CEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLAQREEPIRLNALMLGQFRLLLQVKLLAKKGYSQGDIAGTLKAHPYRVKLAMRQVDRLP
HHHCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHCCC
YQQLATAYSGLVDTETAMKTGTIDKALAFELFMLKYTGQQSGKHVRG
HHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: deoxynucleoside triphosphate; DNAn

Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]