| Definition | Lactobacillus casei ATCC 334, complete genome. |
|---|---|
| Accession | NC_008526 |
| Length | 2,895,264 |
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The map label for this gene is 116494699
Identifier: 116494699
GI number: 116494699
Start: 1186016
End: 1186744
Strand: Direct
Name: 116494699
Synonym: LSEI_1205
Alternate gene names: NA
Gene position: 1186016-1186744 (Clockwise)
Preceding gene: 116494698
Following gene: 116494700
Centisome position: 40.96
GC content: 44.03
Gene sequence:
>729_bases GTGATCTACATTTTAGGCAGTATTGGTGCAGGAAAAACGTCGCTGACAAAAGTTTTGTCAGAAGATATGCAGGCACCGGC ATATTATGAAGATGTTGAAGGTAATGGCATGATCGCCAATATGTTGCAAAAATTTTATGGTGCAGGCGTTGAGAGTCGTA AGCGAACCGGCGCGATGTTGCAGATTGCATTTCTCACGTTCCGTTACCAGCAATTGAAGAAGGCTGTGACCCAAGAAAAC GCGATCATGGATTCTTCGCTTGAATCAGACTTCGTGATGGCCTCGCAGTTGCATAAACACGGTGAAATTGATGATGTTGA TTTCAACGTTTATGTGACACTGTCTCAAGAGATGCAAAGTAATGTCAATGGCAGTCCTTGGAACGGTTTTCCTGATCTAG CAGTTTATCTGAAAATTGATCCAGATCACGAAATTGACGAAATTCAAAGTCGTGGTCGCGATATGGAAGATATTCGCGAA AAGCCGGAGTTGGTCGATTACTATCGGCGTGTCAACACAGCTTATCGTGATTGGGCAAAGGGTTATACGCGCTCGTCTAT GATTACAATTGATCGTGATCGTTATGACTTTATGCACTCAGCAGCTGACCGTGCCAGTGTGTTGGATCAAATTGAAACCA AGCTTGTTGATCTCGGCAAATTATCTCCGCAAGCATTTGATGCGTTGCAAGCGCAACATGCAGATGGGCCGATTTCTAAG TTTGCATGA
Upstream 100 bases:
>100_bases GCAGCTGGGTCTAAAAACGATCTAAGTGGTGCTTTAGCTGTGTTTGTGGTAATGTTTGTTGTTGGCGCAACATAATAAAC ATAATTGAGGAGCGAGATCT
Downstream 100 bases:
>100_bases TTTCCAGTTAAATTGTTAGAAACAACGACCTGTGTCATCCTCATTTTTAGGGGATAACACAGGTCGTTTTTGATTTGTTT CATAAAACATGTTCACAAAC
Product: deoxynucleoside kinase
Products: NA
Alternate protein names: DGK; DGUO kinase; Deoxynucleoside kinase complex I F-component [H]
Number of amino acids: Translated: 242; Mature: 242
Protein sequence:
>242_residues MIYILGSIGAGKTSLTKVLSEDMQAPAYYEDVEGNGMIANMLQKFYGAGVESRKRTGAMLQIAFLTFRYQQLKKAVTQEN AIMDSSLESDFVMASQLHKHGEIDDVDFNVYVTLSQEMQSNVNGSPWNGFPDLAVYLKIDPDHEIDEIQSRGRDMEDIRE KPELVDYYRRVNTAYRDWAKGYTRSSMITIDRDRYDFMHSAADRASVLDQIETKLVDLGKLSPQAFDALQAQHADGPISK FA
Sequences:
>Translated_242_residues MIYILGSIGAGKTSLTKVLSEDMQAPAYYEDVEGNGMIANMLQKFYGAGVESRKRTGAMLQIAFLTFRYQQLKKAVTQEN AIMDSSLESDFVMASQLHKHGEIDDVDFNVYVTLSQEMQSNVNGSPWNGFPDLAVYLKIDPDHEIDEIQSRGRDMEDIRE KPELVDYYRRVNTAYRDWAKGYTRSSMITIDRDRYDFMHSAADRASVLDQIETKLVDLGKLSPQAFDALQAQHADGPISK FA >Mature_242_residues MIYILGSIGAGKTSLTKVLSEDMQAPAYYEDVEGNGMIANMLQKFYGAGVESRKRTGAMLQIAFLTFRYQQLKKAVTQEN AIMDSSLESDFVMASQLHKHGEIDDVDFNVYVTLSQEMQSNVNGSPWNGFPDLAVYLKIDPDHEIDEIQSRGRDMEDIRE KPELVDYYRRVNTAYRDWAKGYTRSSMITIDRDRYDFMHSAADRASVLDQIETKLVDLGKLSPQAFDALQAQHADGPISK FA
Specific function: DGK/DAK plays an essential role in generating the deoxyribonucleotide precursors, dGTP and dATP, for DNA metabolism [H]
COG id: COG1428
COG function: function code F; Deoxynucleoside kinases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DCK/DGK family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002624 [H]
Pfam domain/function: PF01712 dNK [H]
EC number: =2.7.1.113 [H]
Molecular weight: Translated: 27389; Mature: 27389
Theoretical pI: Translated: 4.70; Mature: 4.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIYILGSIGAGKTSLTKVLSEDMQAPAYYEDVEGNGMIANMLQKFYGAGVESRKRTGAML CEEEEECCCCCHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHCCCCCHHHHHCHHH QIAFLTFRYQQLKKAVTQENAIMDSSLESDFVMASQLHKHGEIDDVDFNVYVTLSQEMQS HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECHHHHC NVNGSPWNGFPDLAVYLKIDPDHEIDEIQSRGRDMEDIREKPELVDYYRRVNTAYRDWAK CCCCCCCCCCCCEEEEEEECCCCCHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHH GYTRSSMITIDRDRYDFMHSAADRASVLDQIETKLVDLGKLSPQAFDALQAQHADGPISK CCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHH FA CC >Mature Secondary Structure MIYILGSIGAGKTSLTKVLSEDMQAPAYYEDVEGNGMIANMLQKFYGAGVESRKRTGAML CEEEEECCCCCHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHCCCCCHHHHHCHHH QIAFLTFRYQQLKKAVTQENAIMDSSLESDFVMASQLHKHGEIDDVDFNVYVTLSQEMQS HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECHHHHC NVNGSPWNGFPDLAVYLKIDPDHEIDEIQSRGRDMEDIREKPELVDYYRRVNTAYRDWAK CCCCCCCCCCCCEEEEEEECCCCCHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHH GYTRSSMITIDRDRYDFMHSAADRASVLDQIETKLVDLGKLSPQAFDALQAQHADGPISK CCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHH FA CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7896798; 8172906 [H]