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The map label for this gene is yebC [C]

Identifier: 116494525

GI number: 116494525

Start: 1009749

End: 1010480

Strand: Direct

Name: yebC [C]

Synonym: LSEI_1022

Alternate gene names: 116494525

Gene position: 1009749-1010480 (Clockwise)

Preceding gene: 116494524

Following gene: 116494526

Centisome position: 34.88

GC content: 46.04

Gene sequence:

>732_bases
ATGTCAGGACATTCCAAATGGCATAACATTCAGGGCCGTAAAAATGCTCAGGATTCGAAACGTGGTAAAATTTTCCAGAA
ATTATCACGTGAATTATACATGGCAGCAAAGCAAGGTGGTCCTGACCCCAGTGGTAATCCTTCCCTTCGTTTAGTCATGG
ACAAAGCTAAAGCTGCCAATATGCCAAAAGACAATATTAAGCGTGCTTTAGATAAAGCAAGTGATCGTGATGCGGCCAAC
TATGACGAAGTGACCTATGAAGGCTATGGGCCAGGTGGTGTGGCGATTTTGGTTGAAGCTTTGACCGATAATCGCAACCG
GACTTCCAGTACCGTACGAGTGGCGATCACCCGACACGGTGGGAACATGGCAGCTGCTGGTGCGGTTTCATACATGTTTG
ATCGAAAAGGCTATCTGGTGATTAGCCGTGATGACCTTGATGTTGACGAAGATCAGATGCTAGAAGATGCGCTTGAAGCC
GGTGCAGAAGATATGCAGACTTCAGATGAGGCATTTGAAATCTACACCGATCCTAAAGAATTTGCTCAGGTTCGCGACGC
GCTTGAGGAAAAAGGGTACAAGTTTGTCCAAAACGAACTGACAATGGTTCCGCAAAACCTGACCCCGATTCCAGAAGATA
AAGTTGAAAAATTCCAAGCTATGATTGATCAATTGGAAGACGACGATGATGTGCAGGAAGTTTACACAGCCGGCGACTGG
CCAGACGATTAA

Upstream 100 bases:

>100_bases
TTATGGTTATGGCGGCAGAAGCGTCATTGAATAAAGTGCCGATCTTTGCTATAATTTTAGCGATTCATATGCTCCTAAAC
TTACGAAAAGAGGGTTTATC

Downstream 100 bases:

>100_bases
TGCATCGATTGATAGCTTGTGATCAAGACGAGGGGAAATCCTCGTCTTTTTTTCTGCCCAAAATAGTAAAGAGGACGGGG
TGATATATGACGCTCGCGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 242

Protein sequence:

>243_residues
MSGHSKWHNIQGRKNAQDSKRGKIFQKLSRELYMAAKQGGPDPSGNPSLRLVMDKAKAANMPKDNIKRALDKASDRDAAN
YDEVTYEGYGPGGVAILVEALTDNRNRTSSTVRVAITRHGGNMAAAGAVSYMFDRKGYLVISRDDLDVDEDQMLEDALEA
GAEDMQTSDEAFEIYTDPKEFAQVRDALEEKGYKFVQNELTMVPQNLTPIPEDKVEKFQAMIDQLEDDDDVQEVYTAGDW
PDD

Sequences:

>Translated_243_residues
MSGHSKWHNIQGRKNAQDSKRGKIFQKLSRELYMAAKQGGPDPSGNPSLRLVMDKAKAANMPKDNIKRALDKASDRDAAN
YDEVTYEGYGPGGVAILVEALTDNRNRTSSTVRVAITRHGGNMAAAGAVSYMFDRKGYLVISRDDLDVDEDQMLEDALEA
GAEDMQTSDEAFEIYTDPKEFAQVRDALEEKGYKFVQNELTMVPQNLTPIPEDKVEKFQAMIDQLEDDDDVQEVYTAGDW
PDD
>Mature_242_residues
SGHSKWHNIQGRKNAQDSKRGKIFQKLSRELYMAAKQGGPDPSGNPSLRLVMDKAKAANMPKDNIKRALDKASDRDAANY
DEVTYEGYGPGGVAILVEALTDNRNRTSSTVRVAITRHGGNMAAAGAVSYMFDRKGYLVISRDDLDVDEDQMLEDALEAG
AEDMQTSDEAFEIYTDPKEFAQVRDALEEKGYKFVQNELTMVPQNLTPIPEDKVEKFQAMIDQLEDDDDVQEVYTAGDWP
DD

Specific function: Unknown

COG id: COG0217

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TACO1 family

Homologues:

Organism=Homo sapiens, GI27545315, Length=242, Percent_Identity=32.6446280991736, Blast_Score=142, Evalue=3e-34,
Organism=Escherichia coli, GI1788171, Length=245, Percent_Identity=48.1632653061224, Blast_Score=227, Evalue=4e-61,
Organism=Escherichia coli, GI1788294, Length=233, Percent_Identity=41.2017167381974, Blast_Score=174, Evalue=4e-45,
Organism=Caenorhabditis elegans, GI17556100, Length=242, Percent_Identity=28.5123966942149, Blast_Score=99, Evalue=2e-21,
Organism=Saccharomyces cerevisiae, GI6321458, Length=265, Percent_Identity=33.2075471698113, Blast_Score=124, Evalue=9e-30,
Organism=Drosophila melanogaster, GI24583305, Length=247, Percent_Identity=25.9109311740891, Blast_Score=85, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1022_LACC3 (Q03AF5)

Other databases:

- EMBL:   CP000423
- RefSeq:   YP_806259.1
- ProteinModelPortal:   Q03AF5
- SMR:   Q03AF5
- STRING:   Q03AF5
- GeneID:   4421683
- GenomeReviews:   CP000423_GR
- KEGG:   lca:LSEI_1022
- eggNOG:   COG0217
- HOGENOM:   HBG715231
- OMA:   VYANFDI
- PhylomeDB:   Q03AF5
- ProtClustDB:   PRK00110
- BioCyc:   LCAS321967:LSEI_1022-MONOMER
- HAMAP:   MF_00693
- InterPro:   IPR002876
- InterPro:   IPR017856
- Gene3D:   G3DSA:1.10.10.200
- PANTHER:   PTHR12532
- TIGRFAMs:   TIGR01033

Pfam domain/function: PF01709 DUF28; SSF75625 DUF28

EC number: NA

Molecular weight: Translated: 27106; Mature: 26975

Theoretical pI: Translated: 4.36; Mature: 4.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGHSKWHNIQGRKNAQDSKRGKIFQKLSRELYMAAKQGGPDPSGNPSLRLVMDKAKAAN
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHHCC
MPKDNIKRALDKASDRDAANYDEVTYEGYGPGGVAILVEALTDNRNRTSSTVRVAITRHG
CCHHHHHHHHHHCCCCCCCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEECC
GNMAAAGAVSYMFDRKGYLVISRDDLDVDEDQMLEDALEAGAEDMQTSDEAFEIYTDPKE
CCCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCHHHHCCCCCCEEEECCHHH
FAQVRDALEEKGYKFVQNELTMVPQNLTPIPEDKVEKFQAMIDQLEDDDDVQEVYTAGDW
HHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCC
PDD
CCC
>Mature Secondary Structure 
SGHSKWHNIQGRKNAQDSKRGKIFQKLSRELYMAAKQGGPDPSGNPSLRLVMDKAKAAN
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHHCC
MPKDNIKRALDKASDRDAANYDEVTYEGYGPGGVAILVEALTDNRNRTSSTVRVAITRHG
CCHHHHHHHHHHCCCCCCCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEECC
GNMAAAGAVSYMFDRKGYLVISRDDLDVDEDQMLEDALEAGAEDMQTSDEAFEIYTDPKE
CCCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCHHHHCCCCCCEEEECCHHH
FAQVRDALEEKGYKFVQNELTMVPQNLTPIPEDKVEKFQAMIDQLEDDDDVQEVYTAGDW
HHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCC
PDD
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA