| Definition | Lactobacillus casei ATCC 334, complete genome. |
|---|---|
| Accession | NC_008526 |
| Length | 2,895,264 |
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The map label for this gene is 116494460
Identifier: 116494460
GI number: 116494460
Start: 931895
End: 934261
Strand: Direct
Name: 116494460
Synonym: LSEI_0953
Alternate gene names: NA
Gene position: 931895-934261 (Clockwise)
Preceding gene: 116494459
Following gene: 116494461
Centisome position: 32.19
GC content: 48.04
Gene sequence:
>2367_bases ATGGGGACGATGACCCATTTAGTTTGGCGTCAACTGATTAAGGAGAAGGCGCGCACGTTCACAACCATTCTGGCGATGGC AGTTGCTGCGACCTTAACTGTGGCCACCTTGATTGGCATTAATTCGGCTCGGCATTCAATGTATCAAGATAATATTCAAA ATACCGGCGGCCTACAGTTTGTTTTATCGAAGGTTAACCAAGAAACCGCAATGGCTATTCAGAAAAAAGCCGATATTTCC GAAAGTGTCCGCTATCAGCAACAAGGACAAATCAGCTTTGCTGATCAGGTACCTAACCAACCAGATTCGCCTTTGTTAAT GTTGCCGAAACCGGCGCTGCAGCGATTAATCCAACCCATTCTTTTGGAAGGGCGGCTACCCCAAAATGAGCAAGAAGTCA TGTTAGCCCAAGATTTGATTTCTGATGTTTATGCAGTGGGCAAAACCGTGGCGGCACAGCGCAATGGTCAGCGCGTCGTT CTTAAGATCGTCGGTAGTTACCGTGGCTATGCTGGCCTCATGGCAAGTGATGGCGCTGTCACCACCGGCCATTTTGACGG CACGAAGAACTATGCTGTCGCAGCGGCTTTTGGCAACTATGGCAATTTTTACGCGAAGTTGAAGAAACTCACAGCGCAGT ATCATGTCGGATCCGACCAGCAGAGAATGAATGAATTAGCTTTGGAACGGGCCGGTGAGTCGCGAGATGTCAAGGTCCGT GCCATGTTCGTATTACTTGTCATCGTGGTGCTAAGTGTGATTGGTTTGGTGTCATTGGCGTTGATTTATACCAGCATCAA TCTGAGTGTACAAGCACAAACGCAGCGTTATGGCTTATTGCGTTCAATTGGTGCAACGCCGAGACAAATCCGGCAATCGG TGTATCTGCAAGCACTGACTTTGGTATTGCCAGCGATTTTACTGGGTTTGCTTGCAGGAATCGGTGGGTTGTCACTCGCT TTTCATGAATTGAATCGAATTTTTAAGGCGAGTGGTAACACCTTTCAGCTCCTACTCACGATCAGTTGGTGGCCGATTTT AGTCAGCGGATTTTTCATGTTGCTTGTCACGTTACTAGCAGCACGACGACCAGCCAAACGCGCCGCACAAGTGAGTCCGA TTGCTGCAGTTCGCGCGCAGTCAGCAAGTCGGAAGGTGAGTCAGCGTATGTTACGGCAAGGGATGCTGGGACGATTTTTG CCGACGCCGATTGCTAAATTGGCTTATAAACATTATCGGCGTTTGGGCTGGTCAAAAGTCACGATGATGACAACGCTGGC CTTGTCACTCATGATCTTTATCGGCTTTACCAGTTTCTTTCGCGGCATGTTAACTTTTAGCGATGAAACGATTAGTCGCC AGGCAGATGTGACGATCACCAAGACACAATCGCTGGCATCAGCGAATTTCTCTTTTAATCCGAGGCGACTGCCAGGGGTG AAACGCGGAACGGTGACTGGCACAACTCAAGTCGGTTTGAAAAACGCTCCACAAGCATTTCATGATCGGCTGAATGTGAT CGTGGTGAGTGACCAAACGTTCGGCACTGTTTTTAAAGATCAGCCGACGATTATCACGGGCAGTCGGTTAGTGACGAACT CAAAAACAGGCAAGCGCCAGCAGCAATGGGACACGCCAAAAGATTTTGCAGGAACCTTGGAGCTTGCTAACGAGCAAAGT AGCCAAAAGACTTTAACGCAGCCGATGAAGGTCGTCACCAAGACTGCTGCGGAAATGACCGATTGGCTTGTCAGTGACCA AAGTGGTTTGGTGCTTTCTGCTAGCCGGTTCCGTCAAATCAGCCAAGCACTCCAAATTAAAAATGATGACGTCACGTATG CCATTCAAGTCTTACTAATTAAACCAAGTTTTCATGAGACGGTGGCCAGTGCTTTACGGCATGAAGTGCCACATGCAGCA CTTTTTGATCAAATTGAAAATGATGCGCGTGGCACCAGCTTTCAGCTTGCTATTCAAGTCATGGTCTATGGCTTTTTAAC CCTGCTGACCCTTGTGAGTCTGGCGAACATTGTGAATCATATTTTTGCTAATCTGTTGCAACGGCGGCGAAGTCTCGCCA TGCTGCAAAGTGTCGGTACGACACCTGGTCAAATTGTTCGGATGTTGGCACTTGAGAATGGGTTTCTGTTTGGGACAAGT ATGGTGATTGGGTCTTTGCTGGGGACACTGCTTGGCTGGATTCTGCATCAAGCTGTCAACACCGGTATTACGATGGCTTT TCAGGTTCCTTGGTTAGAGATGGGGATGGCCGGACTTGCATTACTGGCTATCTGGGGTATTTTTGCAGGGATTAGTTTTC AGATTATGCGACATCAGGATATTGATCAATTGATTCGGGTGGGTTAA
Upstream 100 bases:
>100_bases AGACTTTAATTGTGATTACGCATGATCCCGATATTGCTAAGCAAGCAGATCGCGTTGTGACCATCAATGACGGTGTGCTA CGCGAAGGGCGGTGAGCGTC
Downstream 100 bases:
>100_bases GACAAAAGTGAAATGATTGATGGCACTGATGCTTCGGTTTCTAACCGGGCTGGTTCACGCTCTTGCTGAAACGCGCTCGC CACCCCAGAAACCTGCGTGT
Product: lipoprotein release ABC-type transport system, permease component
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 788; Mature: 787
Protein sequence:
>788_residues MGTMTHLVWRQLIKEKARTFTTILAMAVAATLTVATLIGINSARHSMYQDNIQNTGGLQFVLSKVNQETAMAIQKKADIS ESVRYQQQGQISFADQVPNQPDSPLLMLPKPALQRLIQPILLEGRLPQNEQEVMLAQDLISDVYAVGKTVAAQRNGQRVV LKIVGSYRGYAGLMASDGAVTTGHFDGTKNYAVAAAFGNYGNFYAKLKKLTAQYHVGSDQQRMNELALERAGESRDVKVR AMFVLLVIVVLSVIGLVSLALIYTSINLSVQAQTQRYGLLRSIGATPRQIRQSVYLQALTLVLPAILLGLLAGIGGLSLA FHELNRIFKASGNTFQLLLTISWWPILVSGFFMLLVTLLAARRPAKRAAQVSPIAAVRAQSASRKVSQRMLRQGMLGRFL PTPIAKLAYKHYRRLGWSKVTMMTTLALSLMIFIGFTSFFRGMLTFSDETISRQADVTITKTQSLASANFSFNPRRLPGV KRGTVTGTTQVGLKNAPQAFHDRLNVIVVSDQTFGTVFKDQPTIITGSRLVTNSKTGKRQQQWDTPKDFAGTLELANEQS SQKTLTQPMKVVTKTAAEMTDWLVSDQSGLVLSASRFRQISQALQIKNDDVTYAIQVLLIKPSFHETVASALRHEVPHAA LFDQIENDARGTSFQLAIQVMVYGFLTLLTLVSLANIVNHIFANLLQRRRSLAMLQSVGTTPGQIVRMLALENGFLFGTS MVIGSLLGTLLGWILHQAVNTGITMAFQVPWLEMGMAGLALLAIWGIFAGISFQIMRHQDIDQLIRVG
Sequences:
>Translated_788_residues MGTMTHLVWRQLIKEKARTFTTILAMAVAATLTVATLIGINSARHSMYQDNIQNTGGLQFVLSKVNQETAMAIQKKADIS ESVRYQQQGQISFADQVPNQPDSPLLMLPKPALQRLIQPILLEGRLPQNEQEVMLAQDLISDVYAVGKTVAAQRNGQRVV LKIVGSYRGYAGLMASDGAVTTGHFDGTKNYAVAAAFGNYGNFYAKLKKLTAQYHVGSDQQRMNELALERAGESRDVKVR AMFVLLVIVVLSVIGLVSLALIYTSINLSVQAQTQRYGLLRSIGATPRQIRQSVYLQALTLVLPAILLGLLAGIGGLSLA FHELNRIFKASGNTFQLLLTISWWPILVSGFFMLLVTLLAARRPAKRAAQVSPIAAVRAQSASRKVSQRMLRQGMLGRFL PTPIAKLAYKHYRRLGWSKVTMMTTLALSLMIFIGFTSFFRGMLTFSDETISRQADVTITKTQSLASANFSFNPRRLPGV KRGTVTGTTQVGLKNAPQAFHDRLNVIVVSDQTFGTVFKDQPTIITGSRLVTNSKTGKRQQQWDTPKDFAGTLELANEQS SQKTLTQPMKVVTKTAAEMTDWLVSDQSGLVLSASRFRQISQALQIKNDDVTYAIQVLLIKPSFHETVASALRHEVPHAA LFDQIENDARGTSFQLAIQVMVYGFLTLLTLVSLANIVNHIFANLLQRRRSLAMLQSVGTTPGQIVRMLALENGFLFGTS MVIGSLLGTLLGWILHQAVNTGITMAFQVPWLEMGMAGLALLAIWGIFAGISFQIMRHQDIDQLIRVG >Mature_787_residues GTMTHLVWRQLIKEKARTFTTILAMAVAATLTVATLIGINSARHSMYQDNIQNTGGLQFVLSKVNQETAMAIQKKADISE SVRYQQQGQISFADQVPNQPDSPLLMLPKPALQRLIQPILLEGRLPQNEQEVMLAQDLISDVYAVGKTVAAQRNGQRVVL KIVGSYRGYAGLMASDGAVTTGHFDGTKNYAVAAAFGNYGNFYAKLKKLTAQYHVGSDQQRMNELALERAGESRDVKVRA MFVLLVIVVLSVIGLVSLALIYTSINLSVQAQTQRYGLLRSIGATPRQIRQSVYLQALTLVLPAILLGLLAGIGGLSLAF HELNRIFKASGNTFQLLLTISWWPILVSGFFMLLVTLLAARRPAKRAAQVSPIAAVRAQSASRKVSQRMLRQGMLGRFLP TPIAKLAYKHYRRLGWSKVTMMTTLALSLMIFIGFTSFFRGMLTFSDETISRQADVTITKTQSLASANFSFNPRRLPGVK RGTVTGTTQVGLKNAPQAFHDRLNVIVVSDQTFGTVFKDQPTIITGSRLVTNSKTGKRQQQWDTPKDFAGTLELANEQSS QKTLTQPMKVVTKTAAEMTDWLVSDQSGLVLSASRFRQISQALQIKNDDVTYAIQVLLIKPSFHETVASALRHEVPHAAL FDQIENDARGTSFQLAIQVMVYGFLTLLTLVSLANIVNHIFANLLQRRRSLAMLQSVGTTPGQIVRMLALENGFLFGTSM VIGSLLGTLLGWILHQAVNTGITMAFQVPWLEMGMAGLALLAIWGIFAGISFQIMRHQDIDQLIRVG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 86685; Mature: 86553
Theoretical pI: Translated: 10.89; Mature: 10.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGTMTHLVWRQLIKEKARTFTTILAMAVAATLTVATLIGINSARHSMYQDNIQNTGGLQF CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHH VLSKVNQETAMAIQKKADISESVRYQQQGQISFADQVPNQPDSPLLMLPKPALQRLIQPI HHHHHCHHHHHHHHHHCCHHHHHHHHHCCCEEEHHHCCCCCCCCEEECCHHHHHHHHHHH LLEGRLPQNEQEVMLAQDLISDVYAVGKTVAAQRNGQRVVLKIVGSYRGYAGLMASDGAV HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHCCCCCCCEEECCCCE TTGHFDGTKNYAVAAAFGNYGNFYAKLKKLTAQYHVGSDQQRMNELALERAGESRDVKVR EECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHH AMFVLLVIVVLSVIGLVSLALIYTSINLSVQAQTQRYGLLRSIGATPRQIRQSVYLQALT HHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHH LVLPAILLGLLAGIGGLSLAFHELNRIFKASGNTFQLLLTISWWPILVSGFFMLLVTLLA HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEEEECHHHHHHHHHHHHHHHHHH ARRPAKRAAQVSPIAAVRAQSASRKVSQRMLRQGMLGRFLPTPIAKLAYKHYRRLGWSKV CCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHH TMMTTLALSLMIFIGFTSFFRGMLTFSDETISRQADVTITKTQSLASANFSFNPRRLPGV HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEEECHHHHCCCCCCCCCCCCCC KRGTVTGTTQVGLKNAPQAFHDRLNVIVVSDQTFGTVFKDQPTIITGSRLVTNSKTGKRQ CCCCCCCCCCCCCCCCCHHHHCCCCEEEECCCCCCCCCCCCCCEEECCEEEECCCCCCHH QQWDTPKDFAGTLELANEQSSQKTLTQPMKVVTKTAAEMTDWLVSDQSGLVLSASRFRQI HCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHH SQALQIKNDDVTYAIQVLLIKPSFHETVASALRHEVPHAALFDQIENDARGTSFQLAIQV HHHHHCCCCCCEEEEEEEEECCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHH MVYGFLTLLTLVSLANIVNHIFANLLQRRRSLAMLQSVGTTPGQIVRMLALENGFLFGTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEHHH MVIGSLLGTLLGWILHQAVNTGITMAFQVPWLEMGMAGLALLAIWGIFAGISFQIMRHQD HHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCC IDQLIRVG HHHHHHCC >Mature Secondary Structure GTMTHLVWRQLIKEKARTFTTILAMAVAATLTVATLIGINSARHSMYQDNIQNTGGLQF CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHH VLSKVNQETAMAIQKKADISESVRYQQQGQISFADQVPNQPDSPLLMLPKPALQRLIQPI HHHHHCHHHHHHHHHHCCHHHHHHHHHCCCEEEHHHCCCCCCCCEEECCHHHHHHHHHHH LLEGRLPQNEQEVMLAQDLISDVYAVGKTVAAQRNGQRVVLKIVGSYRGYAGLMASDGAV HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHCCCCCCCEEECCCCE TTGHFDGTKNYAVAAAFGNYGNFYAKLKKLTAQYHVGSDQQRMNELALERAGESRDVKVR EECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHH AMFVLLVIVVLSVIGLVSLALIYTSINLSVQAQTQRYGLLRSIGATPRQIRQSVYLQALT HHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHH LVLPAILLGLLAGIGGLSLAFHELNRIFKASGNTFQLLLTISWWPILVSGFFMLLVTLLA HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEEEECHHHHHHHHHHHHHHHHHH ARRPAKRAAQVSPIAAVRAQSASRKVSQRMLRQGMLGRFLPTPIAKLAYKHYRRLGWSKV CCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHH TMMTTLALSLMIFIGFTSFFRGMLTFSDETISRQADVTITKTQSLASANFSFNPRRLPGV HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEEECHHHHCCCCCCCCCCCCCC KRGTVTGTTQVGLKNAPQAFHDRLNVIVVSDQTFGTVFKDQPTIITGSRLVTNSKTGKRQ CCCCCCCCCCCCCCCCCHHHHCCCCEEEECCCCCCCCCCCCCCEEECCEEEECCCCCCHH QQWDTPKDFAGTLELANEQSSQKTLTQPMKVVTKTAAEMTDWLVSDQSGLVLSASRFRQI HCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHH SQALQIKNDDVTYAIQVLLIKPSFHETVASALRHEVPHAALFDQIENDARGTSFQLAIQV HHHHHCCCCCCEEEEEEEEECCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHH MVYGFLTLLTLVSLANIVNHIFANLLQRRRSLAMLQSVGTTPGQIVRMLALENGFLFGTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEHHH MVIGSLLGTLLGWILHQAVNTGITMAFQVPWLEMGMAGLALLAIWGIFAGISFQIMRHQD HHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCC IDQLIRVG HHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA