| Definition | Lactobacillus casei ATCC 334, complete genome. |
|---|---|
| Accession | NC_008526 |
| Length | 2,895,264 |
Click here to switch to the map view.
The map label for this gene is yvlB [H]
Identifier: 116494449
GI number: 116494449
Start: 921123
End: 922604
Strand: Direct
Name: yvlB [H]
Synonym: LSEI_0942
Alternate gene names: 116494449
Gene position: 921123-922604 (Clockwise)
Preceding gene: 116494448
Following gene: 116494450
Centisome position: 31.81
GC content: 46.96
Gene sequence:
>1482_bases ATGAATGAACGCGAAAGAATTTTAGACCTAGTTAAAAAAGGCGTTATTTCAAGCGAAGAGGCGCTGGTACTTTTGGAAAA CCTGGCGAAACGTCAAGGTTCCCAGCAGGCCGCTAGCCCGGCCGATAACACAGCTCCCGAAGAAACTTCGGAAACGCCGA ATACGGATGATGAGCATGCAACCAGTGACACGGATCGCAATGAAGCGCTGACAGAACTCAACACTGAGATTGCTGAAGCA GCAGGTGCCTTAGATGCTGCTACCGCACAGGTTACAACTATTGGTAAACAAATCGATGCGAACAACGAACAGATCATCGT GCTGGACACGATGGAAGATCTCGAAGCCCTTTCCCCGGAAAAATACCAAAAGCGCGGGGATTTGAAACAGGAGAATCAGA AACTGACTGATCAGTTGGCCGAACTAAAAGGCCAAATTGAGTCTCTGAAAGCGAACCTTGCCGGCTTACGTCACCAAAAG CATGATTTAGAGCGTAAGAAGCTTGGCGACAAGATTTTAAATGACGATTGGCAAAAAGATGCTCGCGATGCTTTTTCTGA GTTTGGCAAAAACTTAGGTGATGCAACCACGCAACTGGGTGGGTTCGTGAAGGATACTGTCAACAATGTTTTGGATAACG TTGACTGGAAGAATGTCACCATTACAGTACCCGGTTTAGCAACTGAAAAATTTGACCATGTTTTCGATTTTCCAGATAGT CAGGCAACGATTCTTGATGTGAAAGTTGCTAATGGTGACGTGAAGTTCAAGACTTGGGATCAGCCAGGTATTCAAGTTGC TGCTGCGATTAAGTTGTACGGCAAAATGGATGCCGCATCGCCGCTGGATGCGTTCAAAGACCGGAGCCGCATTGATGTCA CGGACGATCATTTTAGCTTCCAAGTACCAAACAAGCGGGTTCAAGCTGATTTGGTCATCTCATTGCCAAAGCGCAGTTAT GATCATGTTGCTGTCCGGTTATTAAATGGCAGTGCAGACTTAACTGGCATTACCGGTAAAGATTTCTATGTTAAGAGTAC AAATGGTCAGATGAACTTCACTCATGTTGATGGTGTCATGATCGAGAGTGAAGGTGTCAACGGCTCAATCAAGGTTCAAG GTGGTCATACCCATGACTTGTTGCTCACAACAGTGAATGGCGATGTCAGTGTTGATGCCGATCCGGCAACGGCCGCCTTA AAGACAGTTAACGGGACTGTGCGAGCTACCTATCACACGGACTTCACGACGCTTGAAGGCACTTCGATGAACGGCAATGT TAAAGTCGCCGTGCCGTCCTCCATTGCGCTTAACGGCGAGGTTCGGACGCATTTTGGCAGCATCAAGAGCCGCTTGAGTG AAGTTGCCGAACCAGCTAAGGGGATTAAGCGTCTGGAACTGATGCGTCCCGGGACTGGCAGTAGTGAAATGAAACTCAAT ACAACCAGTGGTAACATTCAATTAAAAGATTCAAATGACTGA
Upstream 100 bases:
>100_bases TCCGTCTTCCGACCCGTTCAAAAATCAACCTTTGGACCTATGCGCCCCGGCGCGAATCCGTGCATACTAATCATGTAATC AAATCCTGGAGGGATAACCC
Downstream 100 bases:
>100_bases GGGGATTGCTTATGCCTTTTCTATTAATTCCATTAATGTTCTTTATCATTGGCTTGATCATCGTGGCGGTTTTTGCCATC GGGATATTTCTGCTGAAACT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 493; Mature: 493
Protein sequence:
>493_residues MNERERILDLVKKGVISSEEALVLLENLAKRQGSQQAASPADNTAPEETSETPNTDDEHATSDTDRNEALTELNTEIAEA AGALDAATAQVTTIGKQIDANNEQIIVLDTMEDLEALSPEKYQKRGDLKQENQKLTDQLAELKGQIESLKANLAGLRHQK HDLERKKLGDKILNDDWQKDARDAFSEFGKNLGDATTQLGGFVKDTVNNVLDNVDWKNVTITVPGLATEKFDHVFDFPDS QATILDVKVANGDVKFKTWDQPGIQVAAAIKLYGKMDAASPLDAFKDRSRIDVTDDHFSFQVPNKRVQADLVISLPKRSY DHVAVRLLNGSADLTGITGKDFYVKSTNGQMNFTHVDGVMIESEGVNGSIKVQGGHTHDLLLTTVNGDVSVDADPATAAL KTVNGTVRATYHTDFTTLEGTSMNGNVKVAVPSSIALNGEVRTHFGSIKSRLSEVAEPAKGIKRLELMRPGTGSSEMKLN TTSGNIQLKDSND
Sequences:
>Translated_493_residues MNERERILDLVKKGVISSEEALVLLENLAKRQGSQQAASPADNTAPEETSETPNTDDEHATSDTDRNEALTELNTEIAEA AGALDAATAQVTTIGKQIDANNEQIIVLDTMEDLEALSPEKYQKRGDLKQENQKLTDQLAELKGQIESLKANLAGLRHQK HDLERKKLGDKILNDDWQKDARDAFSEFGKNLGDATTQLGGFVKDTVNNVLDNVDWKNVTITVPGLATEKFDHVFDFPDS QATILDVKVANGDVKFKTWDQPGIQVAAAIKLYGKMDAASPLDAFKDRSRIDVTDDHFSFQVPNKRVQADLVISLPKRSY DHVAVRLLNGSADLTGITGKDFYVKSTNGQMNFTHVDGVMIESEGVNGSIKVQGGHTHDLLLTTVNGDVSVDADPATAAL KTVNGTVRATYHTDFTTLEGTSMNGNVKVAVPSSIALNGEVRTHFGSIKSRLSEVAEPAKGIKRLELMRPGTGSSEMKLN TTSGNIQLKDSND >Mature_493_residues MNERERILDLVKKGVISSEEALVLLENLAKRQGSQQAASPADNTAPEETSETPNTDDEHATSDTDRNEALTELNTEIAEA AGALDAATAQVTTIGKQIDANNEQIIVLDTMEDLEALSPEKYQKRGDLKQENQKLTDQLAELKGQIESLKANLAGLRHQK HDLERKKLGDKILNDDWQKDARDAFSEFGKNLGDATTQLGGFVKDTVNNVLDNVDWKNVTITVPGLATEKFDHVFDFPDS QATILDVKVANGDVKFKTWDQPGIQVAAAIKLYGKMDAASPLDAFKDRSRIDVTDDHFSFQVPNKRVQADLVISLPKRSY DHVAVRLLNGSADLTGITGKDFYVKSTNGQMNFTHVDGVMIESEGVNGSIKVQGGHTHDLLLTTVNGDVSVDADPATAAL KTVNGTVRATYHTDFTTLEGTSMNGNVKVAVPSSIALNGEVRTHFGSIKSRLSEVAEPAKGIKRLELMRPGTGSSEMKLN TTSGNIQLKDSND
Specific function: Unknown
COG id: COG3595
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016599 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53595; Mature: 53595
Theoretical pI: Translated: 4.76; Mature: 4.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNERERILDLVKKGVISSEEALVLLENLAKRQGSQQAASPADNTAPEETSETPNTDDEHA CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TSDTDRNEALTELNTEIAEAAGALDAATAQVTTIGKQIDANNEQIIVLDTMEDLEALSPE CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHCCCH KYQKRGDLKQENQKLTDQLAELKGQIESLKANLAGLRHQKHDLERKKLGDKILNDDWQKD HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH ARDAFSEFGKNLGDATTQLGGFVKDTVNNVLDNVDWKNVTITVPGLATEKFDHVFDFPDS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCCC QATILDVKVANGDVKFKTWDQPGIQVAAAIKLYGKMDAASPLDAFKDRSRIDVTDDHFSF CEEEEEEEEECCCEEEEECCCCCCEEEEEEEHHHCCCCCCCHHHHCCCCCCEECCCCEEE QVPNKRVQADLVISLPKRSYDHVAVRLLNGSADLTGITGKDFYVKSTNGQMNFTHVDGVM ECCCCCEEEEEEEECCCCCCCEEEEEEECCCCCEEECCCCCEEEECCCCEEEEEEECEEE IESEGVNGSIKVQGGHTHDLLLTTVNGDVSVDADPATAALKTVNGTVRATYHTDFTTLEG EEECCCCCEEEEECCCCEEEEEEEECCCEEECCCCHHHHHHCCCCEEEEEEECCCEEEEC TSMNGNVKVAVPSSIALNGEVRTHFGSIKSRLSEVAEPAKGIKRLELMRPGTGSSEMKLN CCCCCEEEEEECCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEE TTSGNIQLKDSND ECCCEEEEECCCC >Mature Secondary Structure MNERERILDLVKKGVISSEEALVLLENLAKRQGSQQAASPADNTAPEETSETPNTDDEHA CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TSDTDRNEALTELNTEIAEAAGALDAATAQVTTIGKQIDANNEQIIVLDTMEDLEALSPE CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHCCCH KYQKRGDLKQENQKLTDQLAELKGQIESLKANLAGLRHQKHDLERKKLGDKILNDDWQKD HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH ARDAFSEFGKNLGDATTQLGGFVKDTVNNVLDNVDWKNVTITVPGLATEKFDHVFDFPDS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCCC QATILDVKVANGDVKFKTWDQPGIQVAAAIKLYGKMDAASPLDAFKDRSRIDVTDDHFSF CEEEEEEEEECCCEEEEECCCCCCEEEEEEEHHHCCCCCCCHHHHCCCCCCEECCCCEEE QVPNKRVQADLVISLPKRSYDHVAVRLLNGSADLTGITGKDFYVKSTNGQMNFTHVDGVM ECCCCCEEEEEEEECCCCCCCEEEEEEECCCCCEEECCCCCEEEECCCCEEEEEEECEEE IESEGVNGSIKVQGGHTHDLLLTTVNGDVSVDADPATAALKTVNGTVRATYHTDFTTLEG EEECCCCCEEEEECCCCEEEEEEEECCCEEECCCCHHHHHHCCCCEEEEEEECCCEEEEC TSMNGNVKVAVPSSIALNGEVRTHFGSIKSRLSEVAEPAKGIKRLELMRPGTGSSEMKLN CCCCCEEEEEECCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEE TTSGNIQLKDSND ECCCEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]