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The map label for this gene is ydiM [H]

Identifier: 116494036

GI number: 116494036

Start: 494460

End: 495677

Strand: Direct

Name: ydiM [H]

Synonym: LSEI_0477

Alternate gene names: 116494036

Gene position: 494460-495677 (Clockwise)

Preceding gene: 116494035

Following gene: 116494037

Centisome position: 17.08

GC content: 50.41

Gene sequence:

>1218_bases
ATGAAAACCAAACGTAATCATTTTTTGCCGGGTGCACTGGCACTGTATTTTTCCTATGCGATGCTGGGGATTGCATCTTC
CATTCTAAGTCAGTATAAGGCGCAGTTTGCTTCGAATTGGGGTGCGCAACAACTGAGCAATGGCACCGTTGACGTCAGCA
TGGTCGTGTCAGTGATTGCGGCGTTCGGGTTAGGTCGCTTGATTGCCTATCCGTTTGCCGGGCCGGTGTCGGATCATTTT
GGCCGGAAGGTTTCTGGGACAATTGGGATCGGGTTGTATGTGATCTTCTTCATCGGCATCATCACGGTCAATAGTTTCTG
GGCGGCTTATCTCATCGGTATTCTTAATGGGATGGCGAACTCATTTTTGGACACCTGTGTTTCCCCGAGTCTCATGGAAA
TGTTTCCGGAATCGGCGTCAATTGCCAATCTTCTGACAAAATTCGCTGTGGTCACCGCGCAGTTTATCTTGCCGTTCTTC
ATTGGCGGCGTTGCGGCGGCTGGCCTGTCATTTCGGACGATCTTCATCATCTGCGGCGTGGCGCTGGCTGCCGATGCCAT
TGCCATTATCGTTTTCCCATTTCCTAAGCGGGAAAAACCACAGCTGAATGCAGCTGGCACGCCTGAAAAAATGCATTTTT
CAATTGGGTCTGTGGCGGCCATTTTAATTGGCTTCACTAGTTCGACCACCTTCATGGTTTGGTTGAATTGCAATCAGGAA
CTAGGGGCGGCTTACGGGGTTAAAAATCCAGCAACGCTGCAATCGTTATACGCCGTTGGTGCTGGGATTGCGGTGTTGCT
GACGGCTCGTCTGATCAAAGCTGGGTTAAAAGAAAGCACCGTTTTGATCCTGTATCCGACGATTGCGGTGGTCATGTTAG
CCTTGTGCTACTTTGTGCAGACGCCGGTCATTCTTTACATCGGCAGCTTTGTGATCGGTTATGCCGCGGCTGGCGGTGTG
TTGCAACTTGCCACCTCAACGACTATCAGTTTTTTCCCCAGTCATAAAGGCACAGCGACTTCGCTGGTCATGATTGCTTC
AAGTATTGCGAACTATGCGGTGTTATCCGCCGCTGCCGGGTTGACCAAGGCCTTTGGCGATGCGGCACCACGGATGATCA
TTCTTTTGAATATTGTCATCACGATTGTCGGCATCGGTTTAGCACTGGTCGTGAAGACGCAGGAAAAGCACGTCCTAGCA
GTTTCACAAGTCCATTAG

Upstream 100 bases:

>100_bases
GGACATGCCGGTGAAGGCATATCAGGCATTTGAAGAAGAGCGTGAACCAGACCGGTCTCTGGTGTAGGGAACACGTTTAA
AAACGGAGGCAACTTGAACG

Downstream 100 bases:

>100_bases
CAAAAAGGAGTTCGGAACATGTCATTAAAAGATGAAATTGACGGTCACACCGTTTTAGCTGGCTTACTGGCGCATCCTGC
TGGCCACTCGATGTCGCCGG

Product: major facilitator superfamily permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 405

Protein sequence:

>405_residues
MKTKRNHFLPGALALYFSYAMLGIASSILSQYKAQFASNWGAQQLSNGTVDVSMVVSVIAAFGLGRLIAYPFAGPVSDHF
GRKVSGTIGIGLYVIFFIGIITVNSFWAAYLIGILNGMANSFLDTCVSPSLMEMFPESASIANLLTKFAVVTAQFILPFF
IGGVAAAGLSFRTIFIICGVALAADAIAIIVFPFPKREKPQLNAAGTPEKMHFSIGSVAAILIGFTSSTTFMVWLNCNQE
LGAAYGVKNPATLQSLYAVGAGIAVLLTARLIKAGLKESTVLILYPTIAVVMLALCYFVQTPVILYIGSFVIGYAAAGGV
LQLATSTTISFFPSHKGTATSLVMIASSIANYAVLSAAAGLTKAFGDAAPRMIILLNIVITIVGIGLALVVKTQEKHVLA
VSQVH

Sequences:

>Translated_405_residues
MKTKRNHFLPGALALYFSYAMLGIASSILSQYKAQFASNWGAQQLSNGTVDVSMVVSVIAAFGLGRLIAYPFAGPVSDHF
GRKVSGTIGIGLYVIFFIGIITVNSFWAAYLIGILNGMANSFLDTCVSPSLMEMFPESASIANLLTKFAVVTAQFILPFF
IGGVAAAGLSFRTIFIICGVALAADAIAIIVFPFPKREKPQLNAAGTPEKMHFSIGSVAAILIGFTSSTTFMVWLNCNQE
LGAAYGVKNPATLQSLYAVGAGIAVLLTARLIKAGLKESTVLILYPTIAVVMLALCYFVQTPVILYIGSFVIGYAAAGGV
LQLATSTTISFFPSHKGTATSLVMIASSIANYAVLSAAAGLTKAFGDAAPRMIILLNIVITIVGIGLALVVKTQEKHVLA
VSQVH
>Mature_405_residues
MKTKRNHFLPGALALYFSYAMLGIASSILSQYKAQFASNWGAQQLSNGTVDVSMVVSVIAAFGLGRLIAYPFAGPVSDHF
GRKVSGTIGIGLYVIFFIGIITVNSFWAAYLIGILNGMANSFLDTCVSPSLMEMFPESASIANLLTKFAVVTAQFILPFF
IGGVAAAGLSFRTIFIICGVALAADAIAIIVFPFPKREKPQLNAAGTPEKMHFSIGSVAAILIGFTSSTTFMVWLNCNQE
LGAAYGVKNPATLQSLYAVGAGIAVLLTARLIKAGLKESTVLILYPTIAVVMLALCYFVQTPVILYIGSFVIGYAAAGGV
LQLATSTTISFFPSHKGTATSLVMIASSIANYAVLSAAAGLTKAFGDAAPRMIILLNIVITIVGIGLALVVKTQEKHVLA
VSQVH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787981, Length=400, Percent_Identity=33, Blast_Score=171, Evalue=9e-44,
Organism=Escherichia coli, GI226510946, Length=413, Percent_Identity=27.1186440677966, Blast_Score=138, Evalue=6e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196
- InterPro:   IPR005829 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 42576; Mature: 42576

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: PS50850 MFS ; PS00216 SUGAR_TRANSPORT_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTKRNHFLPGALALYFSYAMLGIASSILSQYKAQFASNWGAQQLSNGTVDVSMVVSVIA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHH
AFGLGRLIAYPFAGPVSDHFGRKVSGTIGIGLYVIFFIGIITVNSFWAAYLIGILNGMAN
HHHHHHHHHCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SFLDTCVSPSLMEMFPESASIANLLTKFAVVTAQFILPFFIGGVAAAGLSFRTIFIICGV
HHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
ALAADAIAIIVFPFPKREKPQLNAAGTPEKMHFSIGSVAAILIGFTSSTTFMVWLNCNQE
HHHCCCEEEEEECCCCCCCCCCCCCCCCHHHEEHHHHHHHHHHEECCCCEEEEEEECCHH
LGAAYGVKNPATLQSLYAVGAGIAVLLTARLIKAGLKESTVLILYPTIAVVMLALCYFVQ
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHH
TPVILYIGSFVIGYAAAGGVLQLATSTTISFFPSHKGTATSLVMIASSIANYAVLSAAAG
HHHHHHHHHHHHHHHHCCCCEEEECCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LTKAFGDAAPRMIILLNIVITIVGIGLALVVKTQEKHVLAVSQVH
HHHHHHCCCHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEEECCC
>Mature Secondary Structure
MKTKRNHFLPGALALYFSYAMLGIASSILSQYKAQFASNWGAQQLSNGTVDVSMVVSVIA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHH
AFGLGRLIAYPFAGPVSDHFGRKVSGTIGIGLYVIFFIGIITVNSFWAAYLIGILNGMAN
HHHHHHHHHCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SFLDTCVSPSLMEMFPESASIANLLTKFAVVTAQFILPFFIGGVAAAGLSFRTIFIICGV
HHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
ALAADAIAIIVFPFPKREKPQLNAAGTPEKMHFSIGSVAAILIGFTSSTTFMVWLNCNQE
HHHCCCEEEEEECCCCCCCCCCCCCCCCHHHEEHHHHHHHHHHEECCCCEEEEEEECCHH
LGAAYGVKNPATLQSLYAVGAGIAVLLTARLIKAGLKESTVLILYPTIAVVMLALCYFVQ
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHH
TPVILYIGSFVIGYAAAGGVLQLATSTTISFFPSHKGTATSLVMIASSIANYAVLSAAAG
HHHHHHHHHHHHHHHHCCCCEEEECCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LTKAFGDAAPRMIILLNIVITIVGIGLALVVKTQEKHVLAVSQVH
HHHHHHCCCHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]