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The map label for this gene is ydbJ [H]

Identifier: 116494019

GI number: 116494019

Start: 464726

End: 465460

Strand: Direct

Name: ydbJ [H]

Synonym: LSEI_0458

Alternate gene names: 116494019

Gene position: 464726-465460 (Clockwise)

Preceding gene: 116494018

Following gene: 116494020

Centisome position: 16.05

GC content: 47.35

Gene sequence:

>735_bases
ATGAAACAACTTGAGATCGCGCATTTGGACAAAGCTTTTGATCAGCAAGTTTTGTTTAAAGATGCCAGTTTCATGTTTAA
TCAAGGTAAAATATATGGCTTGTTAGGCCGTAACGGCTCCGGAAAGTCGACTTTATTTAATATGATTGTCCGCAACTTGC
CACATGATCACGGGACGATTGCGGTTGATGCCGATGATGGTCGTGGGTTAATTACTGACTACGCAGATACAAGTGTGGGG
ATGGTATACACGCAACCGCACTTACCGGCGTTTATGACGGGGCTTGAATTTGTTAACTACTTTATGAGCATTAACCGAAC
GCGTCTTGAACAAGCACATTCGTCTGTGCAGGCGACCGATTTTTTCGAAATGGCTGGGTTGAGTCAGGCTGATGCGAATA
AGCTTTTACGCGACTATTCTGAGGGAATGCGGAACAAGTTGCAGATTGTGGTATCGCTCATGCTAAGACCGCCAGTACTG
TTGTTAGATGAACCATTGACAACAGTTGACGTGGTGGCGGCCCATGAGATGCAACAGTTGATTGTGGCGATGAAGGCGGA
ATCTGTGGTCATCTTTTCAACCCACATTATGCAGTTAGCCCAAGCTATTTGTGACGCTGTGGTGCTGTTGCATAACCAAC
AGTTGACAGAGCTTTCAGGCTTGGACATCCATAGTCAGGCGTTTGAGGATGCCGTGATCGCCCGGCTCAGTGACGAGGTG
CGGGCCGATGGCTGA

Upstream 100 bases:

>100_bases
AATGATTTGGTATACTAAAGAAAACTTTAGTGATGCCAGATAGCAGCATATGAACGAGATCGGGTTCTGATCTGGGGAAC
GCGTTAAGGGGGCGAACGCT

Downstream 100 bases:

>100_bases
AGCGTGGCGTTACTACTGGTTTCAAGCGCAAGTTGATGCAACGACTATGGTGAATGGGCTGATTTATTTTATCCGGCGGC
TCCCAATATTAGGTAAAAAG

Product: ABC-type uncharacterized transport system, ATPase component

Products: ADP; phosphate; L-proline [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MKQLEIAHLDKAFDQQVLFKDASFMFNQGKIYGLLGRNGSGKSTLFNMIVRNLPHDHGTIAVDADDGRGLITDYADTSVG
MVYTQPHLPAFMTGLEFVNYFMSINRTRLEQAHSSVQATDFFEMAGLSQADANKLLRDYSEGMRNKLQIVVSLMLRPPVL
LLDEPLTTVDVVAAHEMQQLIVAMKAESVVIFSTHIMQLAQAICDAVVLLHNQQLTELSGLDIHSQAFEDAVIARLSDEV
RADG

Sequences:

>Translated_244_residues
MKQLEIAHLDKAFDQQVLFKDASFMFNQGKIYGLLGRNGSGKSTLFNMIVRNLPHDHGTIAVDADDGRGLITDYADTSVG
MVYTQPHLPAFMTGLEFVNYFMSINRTRLEQAHSSVQATDFFEMAGLSQADANKLLRDYSEGMRNKLQIVVSLMLRPPVL
LLDEPLTTVDVVAAHEMQQLIVAMKAESVVIFSTHIMQLAQAICDAVVLLHNQQLTELSGLDIHSQAFEDAVIARLSDEV
RADG
>Mature_244_residues
MKQLEIAHLDKAFDQQVLFKDASFMFNQGKIYGLLGRNGSGKSTLFNMIVRNLPHDHGTIAVDADDGRGLITDYADTSVG
MVYTQPHLPAFMTGLEFVNYFMSINRTRLEQAHSSVQATDFFEMAGLSQADANKLLRDYSEGMRNKLQIVVSLMLRPPVL
LLDEPLTTVDVVAAHEMQQLIVAMKAESVVIFSTHIMQLAQAICDAVVLLHNQQLTELSGLDIHSQAFEDAVIARLSDEV
RADG

Specific function: Involved In A Multicomponent Binding-Protein-Dependent Transport System For Glycine Betaine/L-Proline. [C]

COG id: COG1131

COG function: function code V; ABC-type multidrug transport system, ATPase component

Gene ontology:

Cell location: Inner Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI31657092, Length=209, Percent_Identity=28.2296650717703, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI153792144, Length=201, Percent_Identity=27.363184079602, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI27477115, Length=204, Percent_Identity=26.9607843137255, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI116734710, Length=227, Percent_Identity=29.0748898678414, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI105990541, Length=186, Percent_Identity=27.9569892473118, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI6005701, Length=198, Percent_Identity=27.7777777777778, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI27262624, Length=209, Percent_Identity=26.7942583732057, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI27262626, Length=209, Percent_Identity=26.7942583732057, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI27881501, Length=225, Percent_Identity=28, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI30795238, Length=225, Percent_Identity=28, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI1789032, Length=209, Percent_Identity=25.3588516746411, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1788506, Length=218, Percent_Identity=24.3119266055046, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1789593, Length=218, Percent_Identity=27.0642201834862, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788761, Length=211, Percent_Identity=27.0142180094787, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790162, Length=233, Percent_Identity=25.3218884120172, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790190, Length=228, Percent_Identity=27.1929824561404, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786563, Length=215, Percent_Identity=26.046511627907, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787759, Length=217, Percent_Identity=24.4239631336406, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI48994883, Length=247, Percent_Identity=25.5060728744939, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI145693107, Length=240, Percent_Identity=25.4166666666667, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788450, Length=223, Percent_Identity=24.6636771300448, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787041, Length=219, Percent_Identity=24.6575342465753, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786319, Length=243, Percent_Identity=23.8683127572016, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI87081782, Length=217, Percent_Identity=26.2672811059908, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI2367384, Length=205, Percent_Identity=27.3170731707317, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1786345, Length=217, Percent_Identity=27.6497695852535, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI87081791, Length=220, Percent_Identity=27.2727272727273, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789672, Length=224, Percent_Identity=23.2142857142857, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1787547, Length=229, Percent_Identity=24.0174672489083, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI48995001, Length=214, Percent_Identity=27.1028037383178, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1786398, Length=226, Percent_Identity=23.8938053097345, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1786872, Length=206, Percent_Identity=27.6699029126214, Blast_Score=61, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI71983523, Length=221, Percent_Identity=27.6018099547511, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71983510, Length=221, Percent_Identity=27.6018099547511, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71983516, Length=221, Percent_Identity=27.6018099547511, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17555318, Length=222, Percent_Identity=25.2252252252252, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17510237, Length=218, Percent_Identity=24.3119266055046, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI28574150, Length=224, Percent_Identity=28.125, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI116007328, Length=224, Percent_Identity=28.125, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI28573571, Length=244, Percent_Identity=28.2786885245902, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI28573573, Length=244, Percent_Identity=28.2786885245902, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24666092, Length=218, Percent_Identity=27.0642201834862, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI116007184, Length=217, Percent_Identity=25.3456221198157, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI221500365, Length=217, Percent_Identity=25.3456221198157, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24643674, Length=212, Percent_Identity=26.4150943396226, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24666836, Length=256, Percent_Identity=24.609375, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI221512771, Length=231, Percent_Identity=23.3766233766234, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 27054; Mature: 27054

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQLEIAHLDKAFDQQVLFKDASFMFNQGKIYGLLGRNGSGKSTLFNMIVRNLPHDHGTI
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEE
AVDADDGRGLITDYADTSVGMVYTQPHLPAFMTGLEFVNYFMSINRTRLEQAHSSVQATD
EEECCCCCEEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFEMAGLSQADANKLLRDYSEGMRNKLQIVVSLMLRPPVLLLDEPLTTVDVVAAHEMQQL
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHH
IVAMKAESVVIFSTHIMQLAQAICDAVVLLHNQQLTELSGLDIHSQAFEDAVIARLSDEV
HHHHHCCCEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHH
RADG
CCCC
>Mature Secondary Structure
MKQLEIAHLDKAFDQQVLFKDASFMFNQGKIYGLLGRNGSGKSTLFNMIVRNLPHDHGTI
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEE
AVDADDGRGLITDYADTSVGMVYTQPHLPAFMTGLEFVNYFMSINRTRLEQAHSSVQATD
EEECCCCCEEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFEMAGLSQADANKLLRDYSEGMRNKLQIVVSLMLRPPVLLLDEPLTTVDVVAAHEMQQL
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHH
IVAMKAESVVIFSTHIMQLAQAICDAVVLLHNQQLTELSGLDIHSQAFEDAVIARLSDEV
HHHHHCCCEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHH
RADG
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; L-proline [Periplasm]; H2O [C]

Specific reaction: ATP + L-proline [Periplasm] + H2O = ADP + phosphate + L-proline [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]