| Definition | Lactobacillus casei ATCC 334, complete genome. |
|---|---|
| Accession | NC_008526 |
| Length | 2,895,264 |
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The map label for this gene is 116494017
Identifier: 116494017
GI number: 116494017
Start: 458932
End: 461661
Strand: Direct
Name: 116494017
Synonym: LSEI_0455
Alternate gene names: NA
Gene position: 458932-461661 (Clockwise)
Preceding gene: 116494015
Following gene: 116494018
Centisome position: 15.85
GC content: 45.13
Gene sequence:
>2730_bases GTGACGAAGATGACAGCTAAAGTGGCGAGAACTGGGCATTTGTTCGCGGTCTTATTGATTTTGATGAGTATGTTAACAGG CTTAGTGACAAGTGGCAGTTCAGTTGTGACAGCCACTGCTAACATTCGCCCAACCTATCAAACCGATGCTAATGGTACCT ATCCGACAAATTCGTGGCAGGTCACGGGACAACAAAATGTAATCAATCAACGTGGCGGGGATCAAGTTTCAGGGTGGGAT AACAATACAATATGGAATGGTGATGCGACTGATACCACGAATTCTTACCTGAAATTTGGTGACCCCAATAATCCGGATTA TCAGATTCGAAAATATGCTAAAGAGACGAATACCCCCGGATTGTACGACGTTTATTTGAACGTCAAAGGCAATACCCAGC AAAATGTGAAGCCTGTAGATATTGTCTTAGTTGTTGATATGTCTGGGTCAATGGAGTCAAAAAATAATGGCGGCACAGAT CGTGCTGGTGCCGTTCGTACTGGCGTTAAGAATTTCTTGACTTCTATTCAAAACGCCGGTCTGGGTGATTACGTCAATGT TGGCTTAATTGGTTTTTCTAGTCCCGGCTATATCGGTGGCGGCAATAAAACCACTGGACCGGGTTATATTCGCGTTGGAT TAGGCAAAGCAGGAAATACCAGTCAGCAACAAGCGATTAATAGCGCATTGAGCCCAACTTTTAATGGTGGTACGTATACG CAGATTGGTTTGCGGCAAGGATCAGCCATGCTGAATGCGGACACCAGTGGCAATAAAAAGATGATGATTTTGTTAACAGA TGGTGTGCCGACTTTTTCTGATAAGGTAAAAAATTCAGTGGTGGAAAACGGCACATTGTATGGCACTAACTTTGGAACTA CCAGAGATGAACCCGGCTATACCGCAGAACTTAAAAATCCGTACATCGATAGTTCAGGTGATTATATATATGATACTTGG CCAGCAACATTAGGTGAGGCTAAGAAGGCAAAAGATAGCGGTAATGAGGTGCACGCTTTAGGCATTCAACTGGCTGGCGA CGACGGCTACTGGTCGGAAGGCTACATGTCAGACGAAGATGTGCGTCAAAATATGGAACTTATTCCCACTTCACCAGATC TATACGAAGATGCCGATAGTGCCGATGCCGTTGAGGCTTATTTGAATAATCAGGCAAAGGACATTGTCAAAAACTTTAAT ACTATCATTGACGGCACGATCACAGACCCGATTGGTACGCAATTTCAATATGCGAACAACCAGGCGACCGTTACGAGTGT CGGCAAGCAAACTGTGCCAGCAAGTGAGTTACCAAGTGCGACGATCCAAGATGGTCAATTGACGGTGAATCACATGAACT TGGGTCAGGATCAGGAAGTTCAAATCCATTATCAAGTACGGATCAAAACAGAGGATGCTGGCTTCAAGCCTGATTTTTGG TACCAAATGAATGGTGAAACATTGTTGACACCAAAAGCGGGCGCTGCCGCTGTTGACTTTGGGATTCCTTCAGGCAGGGC ACCAGCAACTACAGTTTATGTGCAGAAGCAATGGCGCCAGTTAAGCAATCAATCGTTACCGGATACGCTCAACGTCACGG TGCAGCGAAAAGTGGCTGACGGTTCGCTTGATCCAAATTGGCAACAGACCTTAGTCCTTAAAAAAGCTGATAACTGGAAA GCTAGCTTTACGGCACCTGCGTATAACAATCAGGGTCAAAGTTTTTCATATGTCGTTAAGAGTGAAGATGCCTCGGGAAT TGATTTGAGTTCGTTTATCAGTTCTCAAAATATGGATCAGCAAACAGCAACGTTGACTTTGACAAATCAGCAGTATGGTT TTCAATTTCAGAAAAAAACAACCGATGGTACTGATTTATCAGCAGATCAGTTGAAGGCCATGCAGTTTAACTTAACCCAG TACAGCGATAACAGTTTTCAGCAGGCATCCAAAACCAACGCCATCACGTCAACGGATCTGCAGGCACTAGCGCCGGGGTA TTACGGTATTCAGGAAGCTGCAGCACCTACAGGTTATCAACTTGATGGGACAACGTATCTTTTTCAGCTAACGTCTGATG GGCAATGGCAATACCATGGCACAAAGGACAATGTGACATCAGGGAGTGTTATTAATGGCCAGCAGACTTTGAATCCTGTT GGTGATAAGTCAGATGATTTTACGGTGACCGGGGATCACCAGCAAATTCTGACGCTGACGAAATATGATGAACCAAAGCC ATCCATGACTTTGCGGGTCATCAAACAGGATAATCAAAGCCAATATCTTGCAGGTGCAGCGTTCACCCTGCAACCAAGTG CTGGCGAAGCTGAGACGATAACATCATCGGCGACATCTGAGGGACAAGCGTTTGCGACAAAATTAATTGCAGATGGTACC TATACGATGTCAGAAACAAAAGCACCAGATGGCTATCAAAGCAATCCTGCAAAGATTGCCATTCAGGTAGCTACGACTGG TAAAGAGGCAACCGTCACGATTGACGGTGAGGCATTGAAGCCGGGCGAAAGTAAGAACGGATACACATTAGCGATTGATA GCAGCACGATCACTTTGCAGGCGATTAATCAGCCACTTGCAATTTTGCCGCATACAGGTGGTCAGGGCTATCAGCGATTG CTTGGTATCGCACTGGGATTGATCAGCGCAGCGTTCCTTTTATTACTGGTTGTTTTGATAAAGCGACGGGTGGTGAAGCA ACATGACTAA
Upstream 100 bases:
>100_bases TTAAGTGGACAAAAAGACTGGCTCTTAAGTGTCGAGTTGTAAGCGCAAGAACAATTGCAATGTCAGTGGCTAAAAGTTCA CCTGAGAGGAGGGTAAAAAT
Downstream 100 bases:
>100_bases ATCCTTCCGTCCGTTAGTGATTTTGACCTTTTGCTTGGCACTACTAGTCAGTTTGGCAACGACAACGTTGCAGCAGACAC AGGCGGCAACTGTGCCGACC
Product: von Willebrand factor domain-containing protein
Products: NA
Alternate protein names: Von Willebrand Factor Domain-Containing Protein; Von Willebrand Factor Domain Containing Protein
Number of amino acids: Translated: 909; Mature: 908
Protein sequence:
>909_residues MTKMTAKVARTGHLFAVLLILMSMLTGLVTSGSSVVTATANIRPTYQTDANGTYPTNSWQVTGQQNVINQRGGDQVSGWD NNTIWNGDATDTTNSYLKFGDPNNPDYQIRKYAKETNTPGLYDVYLNVKGNTQQNVKPVDIVLVVDMSGSMESKNNGGTD RAGAVRTGVKNFLTSIQNAGLGDYVNVGLIGFSSPGYIGGGNKTTGPGYIRVGLGKAGNTSQQQAINSALSPTFNGGTYT QIGLRQGSAMLNADTSGNKKMMILLTDGVPTFSDKVKNSVVENGTLYGTNFGTTRDEPGYTAELKNPYIDSSGDYIYDTW PATLGEAKKAKDSGNEVHALGIQLAGDDGYWSEGYMSDEDVRQNMELIPTSPDLYEDADSADAVEAYLNNQAKDIVKNFN TIIDGTITDPIGTQFQYANNQATVTSVGKQTVPASELPSATIQDGQLTVNHMNLGQDQEVQIHYQVRIKTEDAGFKPDFW YQMNGETLLTPKAGAAAVDFGIPSGRAPATTVYVQKQWRQLSNQSLPDTLNVTVQRKVADGSLDPNWQQTLVLKKADNWK ASFTAPAYNNQGQSFSYVVKSEDASGIDLSSFISSQNMDQQTATLTLTNQQYGFQFQKKTTDGTDLSADQLKAMQFNLTQ YSDNSFQQASKTNAITSTDLQALAPGYYGIQEAAAPTGYQLDGTTYLFQLTSDGQWQYHGTKDNVTSGSVINGQQTLNPV GDKSDDFTVTGDHQQILTLTKYDEPKPSMTLRVIKQDNQSQYLAGAAFTLQPSAGEAETITSSATSEGQAFATKLIADGT YTMSETKAPDGYQSNPAKIAIQVATTGKEATVTIDGEALKPGESKNGYTLAIDSSTITLQAINQPLAILPHTGGQGYQRL LGIALGLISAAFLLLLVVLIKRRVVKQHD
Sequences:
>Translated_909_residues MTKMTAKVARTGHLFAVLLILMSMLTGLVTSGSSVVTATANIRPTYQTDANGTYPTNSWQVTGQQNVINQRGGDQVSGWD NNTIWNGDATDTTNSYLKFGDPNNPDYQIRKYAKETNTPGLYDVYLNVKGNTQQNVKPVDIVLVVDMSGSMESKNNGGTD RAGAVRTGVKNFLTSIQNAGLGDYVNVGLIGFSSPGYIGGGNKTTGPGYIRVGLGKAGNTSQQQAINSALSPTFNGGTYT QIGLRQGSAMLNADTSGNKKMMILLTDGVPTFSDKVKNSVVENGTLYGTNFGTTRDEPGYTAELKNPYIDSSGDYIYDTW PATLGEAKKAKDSGNEVHALGIQLAGDDGYWSEGYMSDEDVRQNMELIPTSPDLYEDADSADAVEAYLNNQAKDIVKNFN TIIDGTITDPIGTQFQYANNQATVTSVGKQTVPASELPSATIQDGQLTVNHMNLGQDQEVQIHYQVRIKTEDAGFKPDFW YQMNGETLLTPKAGAAAVDFGIPSGRAPATTVYVQKQWRQLSNQSLPDTLNVTVQRKVADGSLDPNWQQTLVLKKADNWK ASFTAPAYNNQGQSFSYVVKSEDASGIDLSSFISSQNMDQQTATLTLTNQQYGFQFQKKTTDGTDLSADQLKAMQFNLTQ YSDNSFQQASKTNAITSTDLQALAPGYYGIQEAAAPTGYQLDGTTYLFQLTSDGQWQYHGTKDNVTSGSVINGQQTLNPV GDKSDDFTVTGDHQQILTLTKYDEPKPSMTLRVIKQDNQSQYLAGAAFTLQPSAGEAETITSSATSEGQAFATKLIADGT YTMSETKAPDGYQSNPAKIAIQVATTGKEATVTIDGEALKPGESKNGYTLAIDSSTITLQAINQPLAILPHTGGQGYQRL LGIALGLISAAFLLLLVVLIKRRVVKQHD >Mature_908_residues TKMTAKVARTGHLFAVLLILMSMLTGLVTSGSSVVTATANIRPTYQTDANGTYPTNSWQVTGQQNVINQRGGDQVSGWDN NTIWNGDATDTTNSYLKFGDPNNPDYQIRKYAKETNTPGLYDVYLNVKGNTQQNVKPVDIVLVVDMSGSMESKNNGGTDR AGAVRTGVKNFLTSIQNAGLGDYVNVGLIGFSSPGYIGGGNKTTGPGYIRVGLGKAGNTSQQQAINSALSPTFNGGTYTQ IGLRQGSAMLNADTSGNKKMMILLTDGVPTFSDKVKNSVVENGTLYGTNFGTTRDEPGYTAELKNPYIDSSGDYIYDTWP ATLGEAKKAKDSGNEVHALGIQLAGDDGYWSEGYMSDEDVRQNMELIPTSPDLYEDADSADAVEAYLNNQAKDIVKNFNT IIDGTITDPIGTQFQYANNQATVTSVGKQTVPASELPSATIQDGQLTVNHMNLGQDQEVQIHYQVRIKTEDAGFKPDFWY QMNGETLLTPKAGAAAVDFGIPSGRAPATTVYVQKQWRQLSNQSLPDTLNVTVQRKVADGSLDPNWQQTLVLKKADNWKA SFTAPAYNNQGQSFSYVVKSEDASGIDLSSFISSQNMDQQTATLTLTNQQYGFQFQKKTTDGTDLSADQLKAMQFNLTQY SDNSFQQASKTNAITSTDLQALAPGYYGIQEAAAPTGYQLDGTTYLFQLTSDGQWQYHGTKDNVTSGSVINGQQTLNPVG DKSDDFTVTGDHQQILTLTKYDEPKPSMTLRVIKQDNQSQYLAGAAFTLQPSAGEAETITSSATSEGQAFATKLIADGTY TMSETKAPDGYQSNPAKIAIQVATTGKEATVTIDGEALKPGESKNGYTLAIDSSTITLQAINQPLAILPHTGGQGYQRLL GIALGLISAAFLLLLVVLIKRRVVKQHD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 97897; Mature: 97766
Theoretical pI: Translated: 4.69; Mature: 4.69
Prosite motif: PS50234 VWFA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKMTAKVARTGHLFAVLLILMSMLTGLVTSGSSVVTATANIRPTYQTDANGTYPTNSWQ CCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEECCCCCCCCCCCEE VTGQQNVINQRGGDQVSGWDNNTIWNGDATDTTNSYLKFGDPNNPDYQIRKYAKETNTPG ECCCHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCCC LYDVYLNVKGNTQQNVKPVDIVLVVDMSGSMESKNNGGTDRAGAVRTGVKNFLTSIQNAG EEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC LGDYVNVGLIGFSSPGYIGGGNKTTGPGYIRVGLGKAGNTSQQQAINSALSPTFNGGTYT CCCEEEEEEEEECCCCEECCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCEE QIGLRQGSAMLNADTSGNKKMMILLTDGVPTFSDKVKNSVVENGTLYGTNFGTTRDEPGY EEEEECCCEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCE TAELKNPYIDSSGDYIYDTWPATLGEAKKAKDSGNEVHALGIQLAGDDGYWSEGYMSDED EEECCCCEECCCCCEEEECCCCHHCCHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCHHH VRQNMELIPTSPDLYEDADSADAVEAYLNNQAKDIVKNFNTIIDGTITDPIGTQFQYANN HHCCCEEECCCCCHHCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCEEECCC QATVTSVGKQTVPASELPSATIQDGQLTVNHMNLGQDQEVQIHYQVRIKTEDAGFKPDFW CEEEEECCCCCCCHHHCCCCEECCCEEEEEEECCCCCCEEEEEEEEEEEECCCCCCCCEE YQMNGETLLTPKAGAAAVDFGIPSGRAPATTVYVQKQWRQLSNQSLPDTLNVTVQRKVAD EEECCCEEECCCCCCEEEECCCCCCCCCCEEEEEEHHHHHHCCCCCCCEEEEEEEEEECC GSLDPNWQQTLVLKKADNWKASFTAPAYNNQGQSFSYVVKSEDASGIDLSSFISSQNMDQ CCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCEEEEEEECCCCCCCCHHHHHHCCCCCC QTATLTLTNQQYGFQFQKKTTDGTDLSADQLKAMQFNLTQYSDNSFQQASKTNAITSTDL CEEEEEEECCCCCEEEEECCCCCCCCCHHHHEEEEEEEEECCCCCHHHHHHCCCEECCCH QALAPGYYGIQEAAAPTGYQLDGTTYLFQLTSDGQWQYHGTKDNVTSGSVINGQQTLNPV HHHCCCCCCHHHHCCCCCEEECCCEEEEEEECCCEEEEECCCCCCCCCCEECCHHHCCCC GDKSDDFTVTGDHQQILTLTKYDEPKPSMTLRVIKQDNQSQYLAGAAFTLQPSAGEAETI CCCCCCEEEECCCCEEEEEEECCCCCCCEEEEEEECCCCCCEEEEEEEEECCCCCCCHHE TSSATSEGQAFATKLIADGTYTMSETKAPDGYQSNPAKIAIQVATTGKEATVTIDGEALK ECCCCCCCHHHHHHEEECCEEEECCCCCCCCCCCCCEEEEEEEEECCCEEEEEECCCEEC PGESKNGYTLAIDSSTITLQAINQPLAILPHTGGQGYQRLLGIALGLISAAFLLLLVVLI CCCCCCCEEEEECCCEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH KRRVVKQHD HHHHHHCCC >Mature Secondary Structure TKMTAKVARTGHLFAVLLILMSMLTGLVTSGSSVVTATANIRPTYQTDANGTYPTNSWQ CCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEECCCCCCCCCCCEE VTGQQNVINQRGGDQVSGWDNNTIWNGDATDTTNSYLKFGDPNNPDYQIRKYAKETNTPG ECCCHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCCC LYDVYLNVKGNTQQNVKPVDIVLVVDMSGSMESKNNGGTDRAGAVRTGVKNFLTSIQNAG EEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC LGDYVNVGLIGFSSPGYIGGGNKTTGPGYIRVGLGKAGNTSQQQAINSALSPTFNGGTYT CCCEEEEEEEEECCCCEECCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCEE QIGLRQGSAMLNADTSGNKKMMILLTDGVPTFSDKVKNSVVENGTLYGTNFGTTRDEPGY EEEEECCCEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCE TAELKNPYIDSSGDYIYDTWPATLGEAKKAKDSGNEVHALGIQLAGDDGYWSEGYMSDED EEECCCCEECCCCCEEEECCCCHHCCHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCHHH VRQNMELIPTSPDLYEDADSADAVEAYLNNQAKDIVKNFNTIIDGTITDPIGTQFQYANN HHCCCEEECCCCCHHCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCEEECCC QATVTSVGKQTVPASELPSATIQDGQLTVNHMNLGQDQEVQIHYQVRIKTEDAGFKPDFW CEEEEECCCCCCCHHHCCCCEECCCEEEEEEECCCCCCEEEEEEEEEEEECCCCCCCCEE YQMNGETLLTPKAGAAAVDFGIPSGRAPATTVYVQKQWRQLSNQSLPDTLNVTVQRKVAD EEECCCEEECCCCCCEEEECCCCCCCCCCEEEEEEHHHHHHCCCCCCCEEEEEEEEEECC GSLDPNWQQTLVLKKADNWKASFTAPAYNNQGQSFSYVVKSEDASGIDLSSFISSQNMDQ CCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCEEEEEEECCCCCCCCHHHHHHCCCCCC QTATLTLTNQQYGFQFQKKTTDGTDLSADQLKAMQFNLTQYSDNSFQQASKTNAITSTDL CEEEEEEECCCCCEEEEECCCCCCCCCHHHHEEEEEEEEECCCCCHHHHHHCCCEECCCH QALAPGYYGIQEAAAPTGYQLDGTTYLFQLTSDGQWQYHGTKDNVTSGSVINGQQTLNPV HHHCCCCCCHHHHCCCCCEEECCCEEEEEEECCCEEEEECCCCCCCCCCEECCHHHCCCC GDKSDDFTVTGDHQQILTLTKYDEPKPSMTLRVIKQDNQSQYLAGAAFTLQPSAGEAETI CCCCCCEEEECCCCEEEEEEECCCCCCCEEEEEEECCCCCCEEEEEEEEECCCCCCCHHE TSSATSEGQAFATKLIADGTYTMSETKAPDGYQSNPAKIAIQVATTGKEATVTIDGEALK ECCCCCCCHHHHHHEEECCEEEECCCCCCCCCCCCCEEEEEEEEECCCEEEEEECCCEEC PGESKNGYTLAIDSSTITLQAINQPLAILPHTGGQGYQRLLGIALGLISAAFLLLLVVLI CCCCCCCEEEEECCCEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH KRRVVKQHD HHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA