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The map label for this gene is 116493955

Identifier: 116493955

GI number: 116493955

Start: 394659

End: 395138

Strand: Direct

Name: 116493955

Synonym: LSEI_0391

Alternate gene names: NA

Gene position: 394659-395138 (Clockwise)

Preceding gene: 116493952

Following gene: 116493956

Centisome position: 13.63

GC content: 48.75

Gene sequence:

>480_bases
GTGTATGCAGCTTTGGCGCAGTTGGGGATTCGGCGTGATCGAAGTGATTTTCAGGATTGGCGTGATGATGGGATGTTGGT
GTACCTCAACTACTTCAACCGATATCGCGATCCATTGACGGATGAGGCTGCCATTCGCAAGTTTAATAAGCTGGCATGGC
ATTTTGTTTATCTGACGTTGATGCAGCGAATGCAGAAAAACCGGCAGCGAAGCGTGATTGAGCGGTTGCCAAGCAATATC
ACTTTATTGCAGAAAACGACTTTTGCCAGCACTGTTTTGAATGTGCAGACATCGCTGGAATGGGATGGTCAGCTGCAACG
ACTCGCGGCTATTTTGACGCCTATGGAGCGAACAGTTTTGGGCTTGCGATTGGCTGACTTGTCAGATGCTGGCATCGCAG
GTCGATTACAGATTAGTCGGCAACGAGTTTTGAAGATACGTAAGCAGTTGCAGGCCAAGTATCGACAGATTGTCGGCTGA

Upstream 100 bases:

>100_bases
AAACCCATCGATATCGAAAGACACTAGGCGCCGGATGGGATTAGGAGATGGCACAGGAGGAGGCAGGATTTGCATTGTAT
CTCGCACATCAAGGGGGGGG

Downstream 100 bases:

>100_bases
TGGCAGGATGGTTTCTATTGAATCGGTTCATGCTCACTTGAACTTTTTGACGTAACGAAAAGAGGAATAAAAAATGGATA
AAGAATTATTGACGTATGTC

Product: DNA-directed RNA polymerase specialized sigma subunit, sigma24-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 159

Protein sequence:

>159_residues
MYAALAQLGIRRDRSDFQDWRDDGMLVYLNYFNRYRDPLTDEAAIRKFNKLAWHFVYLTLMQRMQKNRQRSVIERLPSNI
TLLQKTTFASTVLNVQTSLEWDGQLQRLAAILTPMERTVLGLRLADLSDAGIAGRLQISRQRVLKIRKQLQAKYRQIVG

Sequences:

>Translated_159_residues
MYAALAQLGIRRDRSDFQDWRDDGMLVYLNYFNRYRDPLTDEAAIRKFNKLAWHFVYLTLMQRMQKNRQRSVIERLPSNI
TLLQKTTFASTVLNVQTSLEWDGQLQRLAAILTPMERTVLGLRLADLSDAGIAGRLQISRQRVLKIRKQLQAKYRQIVG
>Mature_159_residues
MYAALAQLGIRRDRSDFQDWRDDGMLVYLNYFNRYRDPLTDEAAIRKFNKLAWHFVYLTLMQRMQKNRQRSVIERLPSNI
TLLQKTTFASTVLNVQTSLEWDGQLQRLAAILTPMERTVLGLRLADLSDAGIAGRLQISRQRVLKIRKQLQAKYRQIVG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18644; Mature: 18644

Theoretical pI: Translated: 11.13; Mature: 11.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYAALAQLGIRRDRSDFQDWRDDGMLVYLNYFNRYRDPLTDEAAIRKFNKLAWHFVYLTL
CHHHHHHHHHHCCHHHHHHHHCCCEEEEHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
MQRMQKNRQRSVIERLPSNITLLQKTTFASTVLNVQTSLEWDGQLQRLAAILTPMERTVL
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
GLRLADLSDAGIAGRLQISRQRVLKIRKQLQAKYRQIVG
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MYAALAQLGIRRDRSDFQDWRDDGMLVYLNYFNRYRDPLTDEAAIRKFNKLAWHFVYLTL
CHHHHHHHHHHCCHHHHHHHHCCCEEEEHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
MQRMQKNRQRSVIERLPSNITLLQKTTFASTVLNVQTSLEWDGQLQRLAAILTPMERTVL
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
GLRLADLSDAGIAGRLQISRQRVLKIRKQLQAKYRQIVG
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA