Click here to switch to the map view.

The map label for this gene is 116493884

Identifier: 116493884

GI number: 116493884

Start: 317569

End: 318003

Strand: Direct

Name: 116493884

Synonym: LSEI_0316

Alternate gene names: NA

Gene position: 317569-318003 (Clockwise)

Preceding gene: 116493883

Following gene: 116493885

Centisome position: 10.97

GC content: 47.36

Gene sequence:

>435_bases
ATGCCAAAAGAACCGGATGAATTGCTTTCAAGAGTCAATATCCTAGCGCGCCACATTCAACACGACTTGGATGTTGCGTT
AGCGCCAACCACGCTCAGTGCGAGTAACTATTACTTTATCTTGAAGCTTGGCAAAGTCGATGAAATGCGGCAGGAAACAC
TTTTTAAAACGATTCACCTTAATCCCAGCAACGTCACACGCCGATTGGCCCAGCTGATTGCGTTGGGACTCGTCGCAAAA
CGCCGATCCGACGAGGACAAACGTGCTTGGATTATCAGCCTCACGCCAAAAGGCCGGCGCTTGATCCCGATGGTGACGCA
AATTGTGGCCGATTATGAAGCCACTTTGACAGCAAAACTGTCTGAAGCTAACAAAATTGAATTTGTCAGGATGCTTGATG
TGCTTAACGAAACTGAAAAGGGGTCGGAATTTTGA

Upstream 100 bases:

>100_bases
GCCGCTCCGCAAGCTTTGTTCGTTGCGCAGGGTGTCAGCTTCATGCTAGCAGCTGCTCTGTTTTTCATCGCCGTCATGTT
GTTACGAAAGAAGGTAGAAA

Downstream 100 bases:

>100_bases
AAAACGATATGATGGCTTTATTGCCAATTCCTGAAGATTATCACGTGGTTCAAACAGACGTCCGCAAGCGAAATAAAGTG
CAGGTGACGGTGGACCGTTA

Product: transcriptional regulator

Products: NA

Alternate protein names: MarR Family Transcriptional Regulator; Transcriptional Regulator MarR Family

Number of amino acids: Translated: 144; Mature: 143

Protein sequence:

>144_residues
MPKEPDELLSRVNILARHIQHDLDVALAPTTLSASNYYFILKLGKVDEMRQETLFKTIHLNPSNVTRRLAQLIALGLVAK
RRSDEDKRAWIISLTPKGRRLIPMVTQIVADYEATLTAKLSEANKIEFVRMLDVLNETEKGSEF

Sequences:

>Translated_144_residues
MPKEPDELLSRVNILARHIQHDLDVALAPTTLSASNYYFILKLGKVDEMRQETLFKTIHLNPSNVTRRLAQLIALGLVAK
RRSDEDKRAWIISLTPKGRRLIPMVTQIVADYEATLTAKLSEANKIEFVRMLDVLNETEKGSEF
>Mature_143_residues
PKEPDELLSRVNILARHIQHDLDVALAPTTLSASNYYFILKLGKVDEMRQETLFKTIHLNPSNVTRRLAQLIALGLVAKR
RSDEDKRAWIISLTPKGRRLIPMVTQIVADYEATLTAKLSEANKIEFVRMLDVLNETEKGSEF

Specific function: Unknown

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16415; Mature: 16284

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: PS01117 HTH_MARR_1 ; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKEPDELLSRVNILARHIQHDLDVALAPTTLSASNYYFILKLGKVDEMRQETLFKTIHL
CCCCHHHHHHHHHHHHHHHHHHCCEEECCCEECCCCEEEEEEECCHHHHHHHHHHHHCCC
NPSNVTRRLAQLIALGLVAKRRSDEDKRAWIISLTPKGRRLIPMVTQIVADYEATLTAKL
CHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHEEEC
SEANKIEFVRMLDVLNETEKGSEF
CCCCHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
PKEPDELLSRVNILARHIQHDLDVALAPTTLSASNYYFILKLGKVDEMRQETLFKTIHL
CCCHHHHHHHHHHHHHHHHHHCCEEECCCEECCCCEEEEEEECCHHHHHHHHHHHHCCC
NPSNVTRRLAQLIALGLVAKRRSDEDKRAWIISLTPKGRRLIPMVTQIVADYEATLTAKL
CHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHEEEC
SEANKIEFVRMLDVLNETEKGSEF
CCCCHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA