| Definition | Lactobacillus casei ATCC 334, complete genome. |
|---|---|
| Accession | NC_008526 |
| Length | 2,895,264 |
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The map label for this gene is tenA [H]
Identifier: 116493865
GI number: 116493865
Start: 300135
End: 300827
Strand: Direct
Name: tenA [H]
Synonym: LSEI_0297
Alternate gene names: 116493865
Gene position: 300135-300827 (Clockwise)
Preceding gene: 116493864
Following gene: 116493866
Centisome position: 10.37
GC content: 49.93
Gene sequence:
>693_bases ATGAAATTTTCTGAAAAAGCTCGGCAGCAAGTTGTTCCGTACTGGGAAGGCAGCTTCACTCACCCATTTATTACGGAGCT ACAAGCTGGCCCCCTTGATCCGGCGATTTTCCGCTTTTATCTGATTCAGGATGCTTATTATCTGCAACATTTTACACATT TATATACGCTGATTGCCGCACAGACGCAGGAGCCGGAATTGAAAGCTTATGCGCTGCAGTCGGCTGAAGGTTTGGCCCAA GGTGAAATTGCGATACGCCACGATTTTTTCGCCGAATTGAACATCTCAACAACTGAGCTGGCGGCCACCACGATTGCGCC GACCACGTATCACTATGTTTCCCACATGTACCGACAATTGGTTGAAGGCACGCCGCATGTGGCGATTGCGGGGATGCTGC CATGTCCATGGTTGTATCAGGAGGTGGCACAGCAGTTGAAGCAACGAAAATCACCCGTGCCGATTTATCAGCGCTGGATT GACATTTATAGCGGTGCGGATAACGCGGACGATCAGCGAGCGGCGATTGCGTTGATTGATCGGTTGTACGACCAAAGAAT GCCGACTGAGCAGCAACAAATGCTGGCTGCGTTTCGGATCAGCAGTCAAATGGAATACAGCTTTTGGGAGATGGCGTATC ACTTAGAAGCGTGGCCGAAAGGAGCAAAGGTTGATGACACAAAGCAGCGTTAA
Upstream 100 bases:
>100_bases TATTGGCCATTAACGTCATAAAAAACTTGATTCTAGTAAAAATACTGTTTTTAGGCTTTGAATATGGTCAAGATAGACAG AATTAAAGGAGCAAACGATG
Downstream 100 bases:
>100_bases GAAACTGGCGATATTAGCGATGATGATTGCCTTAGATGTGGTGCTTTCACCCTTATTTCGCGTTGAAGGGATGGCACCTA TGTCCAGCGTGGTCAATGTC
Product: putative transcription activator
Products: NA
Alternate protein names: Thiaminase II; Transcriptional activator tenA [H]
Number of amino acids: Translated: 230; Mature: 230
Protein sequence:
>230_residues MKFSEKARQQVVPYWEGSFTHPFITELQAGPLDPAIFRFYLIQDAYYLQHFTHLYTLIAAQTQEPELKAYALQSAEGLAQ GEIAIRHDFFAELNISTTELAATTIAPTTYHYVSHMYRQLVEGTPHVAIAGMLPCPWLYQEVAQQLKQRKSPVPIYQRWI DIYSGADNADDQRAAIALIDRLYDQRMPTEQQQMLAAFRISSQMEYSFWEMAYHLEAWPKGAKVDDTKQR
Sequences:
>Translated_230_residues MKFSEKARQQVVPYWEGSFTHPFITELQAGPLDPAIFRFYLIQDAYYLQHFTHLYTLIAAQTQEPELKAYALQSAEGLAQ GEIAIRHDFFAELNISTTELAATTIAPTTYHYVSHMYRQLVEGTPHVAIAGMLPCPWLYQEVAQQLKQRKSPVPIYQRWI DIYSGADNADDQRAAIALIDRLYDQRMPTEQQQMLAAFRISSQMEYSFWEMAYHLEAWPKGAKVDDTKQR >Mature_230_residues MKFSEKARQQVVPYWEGSFTHPFITELQAGPLDPAIFRFYLIQDAYYLQHFTHLYTLIAAQTQEPELKAYALQSAEGLAQ GEIAIRHDFFAELNISTTELAATTIAPTTYHYVSHMYRQLVEGTPHVAIAGMLPCPWLYQEVAQQLKQRKSPVPIYQRWI DIYSGADNADDQRAAIALIDRLYDQRMPTEQQQMLAAFRISSQMEYSFWEMAYHLEAWPKGAKVDDTKQR
Specific function: Stimulates the production of several extracellular degradative enzymes at the transcriptional level, probably by interfering with degS and degU, which are required for this effect. Is not an essential protein, but affects the sporulation frequency [H]
COG id: COG0819
COG function: function code K; Putative transcription activator
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the thiaminase-2 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016084 - InterPro: IPR004305 [H]
Pfam domain/function: PF03070 TENA_THI-4 [H]
EC number: =3.5.99.2 [H]
Molecular weight: Translated: 26616; Mature: 26616
Theoretical pI: Translated: 5.83; Mature: 5.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFSEKARQQVVPYWEGSFTHPFITELQAGPLDPAIFRFYLIQDAYYLQHFTHLYTLIAA CCCCHHHHHHCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH QTQEPELKAYALQSAEGLAQGEIAIRHDFFAELNISTTELAATTIAPTTYHYVSHMYRQL CCCCCCHHHHHHHHHCCCCCCCEEEEEHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH VEGTPHVAIAGMLPCPWLYQEVAQQLKQRKSPVPIYQRWIDIYSGADNADDQRAAIALID HCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHH RLYDQRMPTEQQQMLAAFRISSQMEYSFWEMAYHLEAWPKGAKVDDTKQR HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure MKFSEKARQQVVPYWEGSFTHPFITELQAGPLDPAIFRFYLIQDAYYLQHFTHLYTLIAA CCCCHHHHHHCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH QTQEPELKAYALQSAEGLAQGEIAIRHDFFAELNISTTELAATTIAPTTYHYVSHMYRQL CCCCCCHHHHHHHHHCCCCCCCEEEEEHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH VEGTPHVAIAGMLPCPWLYQEVAQQLKQRKSPVPIYQRWIDIYSGADNADDQRAAIALID HCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHH RLYDQRMPTEQQQMLAAFRISSQMEYSFWEMAYHLEAWPKGAKVDDTKQR HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1898926; 9384377 [H]