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The map label for this gene is ydhO [C]

Identifier: 116493849

GI number: 116493849

Start: 281154

End: 282632

Strand: Direct

Name: ydhO [C]

Synonym: LSEI_0281

Alternate gene names: 116493849

Gene position: 281154-282632 (Clockwise)

Preceding gene: 116493848

Following gene: 116493852

Centisome position: 9.71

GC content: 52.27

Gene sequence:

>1479_bases
ATGGTAGATGCAAAGAAAGTATTGTCAGTTACGGCAGGATTCGTTGGTGCTGCCGGTTTGGCAACTTTAGCTACCGGCGC
TAATACTGTTTCCGCTTCAACGGGGACAGTCAATTACAAATCGGGTGCGACCACCGTATGGAATAGTCCATCATGGCATC
AAGTAAAACGCTATGTGACTTTTGGTGACAAAGTACAAGTTCTAGGTCAAAAAGTTGACCGAAACGGTGCTACTTGGTAT
AAAGTCGGCGACAATCAGTGGATCCCTGGCATTTATTTGAATTTTGACGGCAAGACTGTCACCGTTCAAGCACCAGAACA
AACTGCCAGTCAGGCACCGGTTAGCCAAGCGCCAGCTAGCCAAGCACCTGCAAGTCAGGCACCTGCGAGTCAAGCAGCCG
CACAGCCTGATACCCAGACAGCAAACATTCAGTTATATGTTAAAAACATTGGTTCTGCAGTCACAGTTTGGGCAACACCA
GCGTACAGTCAGGCAACTGGCCAGTATCTGGAAGGCAACCAGACGTTGACGGCGGTTGCCCAGTTGCAAGCCAATGGCGA
AACATGGTATCGGTTAGCAAATGGCGGTTACGTGCCAGAACGTTTTGCTAGCACAACACCTGCACCAGCACCGCAGTCAT
CTGCTGCAACGAGTGTTGCGGCACCGACTGCGCCTGTATCTGATGCAACGGCTTCGAACGCAGCTGCTTCAAATGCCGCC
GCTTCGGATGCTGCTGTCTCCAGTGCTGCAGCGTCTAGTGCCGCGGCTTCATTAGCTGCCGCTTCAGAAGCTGCTGCGGT
TGCGAATGCTTCTAGCGCTGCTGCATCTTCTGCTGCCGCTGTAGCGAGTGCTGCCGCAGAATCCAGTGCTGCTGCAGAAT
CTAGTGCTGCTGCATCAAGGGCTGCTGCTGATTCTAGCGCTGCAGCTGTGCAGACTACGACGCCTGAGTCCAGTGCTGCG
CCTGCAACGACACAGGTTGATGCAACTCAGGAACAGCAACAGCAGGCAGAACCAAGCAATACGGTCAATGCCGAGGAAAC
GACAAATAACGCGACGCCTGCACCAACGCCGACGCCTGCACCAACCCCAGCCCCAGCTCCTGTTACGCCGTCACGTCAGG
CAAAAATTCAGGCGGTTATCTCAATTGCTGAACAGCAAATTGGGAAACCTTATGTATGGGGTGGCAAGGGTCCTAACAGC
TTTGACTGCTCAGGCTTGATGTATTATGCCTTTTTGAACGGCGCCGGTGTTAACATCGGTGGTTGGACAGTGCCACAAGA
ATCTTCTGGTCAGCAAGTCTCACTGAGTGCACTTCAGCCTGGTGATTTGCTCTTCTGGGGCGGACATGGTAGCTCTTACC
ACGTAGCGCTCTACATTGGTGGCGGTACAATGATTCAGGCACCACAACCAGGTGAAAATGTGAAGTATACGGCATTAGCT
TACTTCATGCCTGATTTTGCTGTTCGTCCTTCACTATAA

Upstream 100 bases:

>100_bases
AGGAAACGTGTTATTCTGTATATGGTTTCTTAAGAAATGGTAAACGCAAGTAAAACGCAATTTTTGAAAAAATTCAGTTT
TGGATTGGAGGAGTACATAC

Downstream 100 bases:

>100_bases
GGATAACTAATGGCTAAAATTAAATTGGAACATTCTCGCGAGAGGGTGTTCCTTTTTTTGCTTTTTTTCATTCTGGGGCA
AAAAATATCCTGCATTCACG

Product: cell wall-associated hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 492; Mature: 492

Protein sequence:

>492_residues
MVDAKKVLSVTAGFVGAAGLATLATGANTVSASTGTVNYKSGATTVWNSPSWHQVKRYVTFGDKVQVLGQKVDRNGATWY
KVGDNQWIPGIYLNFDGKTVTVQAPEQTASQAPVSQAPASQAPASQAPASQAAAQPDTQTANIQLYVKNIGSAVTVWATP
AYSQATGQYLEGNQTLTAVAQLQANGETWYRLANGGYVPERFASTTPAPAPQSSAATSVAAPTAPVSDATASNAAASNAA
ASDAAVSSAAASSAAASLAAASEAAAVANASSAAASSAAAVASAAAESSAAAESSAAASRAAADSSAAAVQTTTPESSAA
PATTQVDATQEQQQQAEPSNTVNAEETTNNATPAPTPTPAPTPAPAPVTPSRQAKIQAVISIAEQQIGKPYVWGGKGPNS
FDCSGLMYYAFLNGAGVNIGGWTVPQESSGQQVSLSALQPGDLLFWGGHGSSYHVALYIGGGTMIQAPQPGENVKYTALA
YFMPDFAVRPSL

Sequences:

>Translated_492_residues
MVDAKKVLSVTAGFVGAAGLATLATGANTVSASTGTVNYKSGATTVWNSPSWHQVKRYVTFGDKVQVLGQKVDRNGATWY
KVGDNQWIPGIYLNFDGKTVTVQAPEQTASQAPVSQAPASQAPASQAPASQAAAQPDTQTANIQLYVKNIGSAVTVWATP
AYSQATGQYLEGNQTLTAVAQLQANGETWYRLANGGYVPERFASTTPAPAPQSSAATSVAAPTAPVSDATASNAAASNAA
ASDAAVSSAAASSAAASLAAASEAAAVANASSAAASSAAAVASAAAESSAAAESSAAASRAAADSSAAAVQTTTPESSAA
PATTQVDATQEQQQQAEPSNTVNAEETTNNATPAPTPTPAPTPAPAPVTPSRQAKIQAVISIAEQQIGKPYVWGGKGPNS
FDCSGLMYYAFLNGAGVNIGGWTVPQESSGQQVSLSALQPGDLLFWGGHGSSYHVALYIGGGTMIQAPQPGENVKYTALA
YFMPDFAVRPSL
>Mature_492_residues
MVDAKKVLSVTAGFVGAAGLATLATGANTVSASTGTVNYKSGATTVWNSPSWHQVKRYVTFGDKVQVLGQKVDRNGATWY
KVGDNQWIPGIYLNFDGKTVTVQAPEQTASQAPVSQAPASQAPASQAPASQAAAQPDTQTANIQLYVKNIGSAVTVWATP
AYSQATGQYLEGNQTLTAVAQLQANGETWYRLANGGYVPERFASTTPAPAPQSSAATSVAAPTAPVSDATASNAAASNAA
ASDAAVSSAAASSAAASLAAASEAAAVANASSAAASSAAAVASAAAESSAAAESSAAASRAAADSSAAAVQTTTPESSAA
PATTQVDATQEQQQQAEPSNTVNAEETTNNATPAPTPTPAPTPAPAPVTPSRQAKIQAVISIAEQQIGKPYVWGGKGPNS
FDCSGLMYYAFLNGAGVNIGGWTVPQESSGQQVSLSALQPGDLLFWGGHGSSYHVALYIGGGTMIQAPQPGENVKYTALA
YFMPDFAVRPSL

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Secreted, cell wall [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase C40 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=122, Percent_Identity=36.8852459016393, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1786421, Length=109, Percent_Identity=36.697247706422, Blast_Score=78, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 49408; Mature: 49408

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDAKKVLSVTAGFVGAAGLATLATGANTVSASTGTVNYKSGATTVWNSPSWHQVKRYVT
CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCEEEECCCCCEECCCCCHHHHHHHHC
FGDKVQVLGQKVDRNGATWYKVGDNQWIPGIYLNFDGKTVTVQAPEQTASQAPVSQAPAS
CCCHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEECCCEEEEECCHHHHHCCCCCCCCCC
QAPASQAPASQAAAQPDTQTANIQLYVKNIGSAVTVWATPAYSQATGQYLEGNQTLTAVA
CCCCCCCCCHHHCCCCCCCCEEEEEEEECCCCEEEEEECCCCHHHCCCEECCCCEEEEEE
QLQANGETWYRLANGGYVPERFASTTPAPAPQSSAATSVAAPTAPVSDATASNAAASNAA
EEECCCCEEEEECCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
ASDAAVSSAAASSAAASLAAASEAAAVANASSAAASSAAAVASAAAESSAAAESSAAASR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAADSSAAAVQTTTPESSAAPATTQVDATQEQQQQAEPSNTVNAEETTNNATPAPTPTPA
HCCCCCCCEEEECCCCCCCCCCEEECCCHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCCC
PTPAPAPVTPSRQAKIQAVISIAEQQIGKPYVWGGKGPNSFDCSGLMYYAFLNGAGVNIG
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCEEEEEEECCCCCCCC
GWTVPQESSGQQVSLSALQPGDLLFWGGHGSSYHVALYIGGGTMIQAPQPGENVKYTALA
CEECCCCCCCCEEEEEECCCCCEEEECCCCCCEEEEEEECCCEEEECCCCCCCCEEEEEE
YFMPDFAVRPSL
EECCCCCCCCCC
>Mature Secondary Structure
MVDAKKVLSVTAGFVGAAGLATLATGANTVSASTGTVNYKSGATTVWNSPSWHQVKRYVT
CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCEEEECCCCCEECCCCCHHHHHHHHC
FGDKVQVLGQKVDRNGATWYKVGDNQWIPGIYLNFDGKTVTVQAPEQTASQAPVSQAPAS
CCCHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEECCCEEEEECCHHHHHCCCCCCCCCC
QAPASQAPASQAAAQPDTQTANIQLYVKNIGSAVTVWATPAYSQATGQYLEGNQTLTAVA
CCCCCCCCCHHHCCCCCCCCEEEEEEEECCCCEEEEEECCCCHHHCCCEECCCCEEEEEE
QLQANGETWYRLANGGYVPERFASTTPAPAPQSSAATSVAAPTAPVSDATASNAAASNAA
EEECCCCEEEEECCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
ASDAAVSSAAASSAAASLAAASEAAAVANASSAAASSAAAVASAAAESSAAAESSAAASR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAADSSAAAVQTTTPESSAAPATTQVDATQEQQQQAEPSNTVNAEETTNNATPAPTPTPA
HCCCCCCCEEEECCCCCCCCCCEEECCCHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCCC
PTPAPAPVTPSRQAKIQAVISIAEQQIGKPYVWGGKGPNSFDCSGLMYYAFLNGAGVNIG
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCEEEEEEECCCCCCCC
GWTVPQESSGQQVSLSALQPGDLLFWGGHGSSYHVALYIGGGTMIQAPQPGENVKYTALA
CEECCCCCCCCEEEEEECCCCCEEEECCCCCCEEEEEEECCCEEEECCCCCCCCEEEEEE
YFMPDFAVRPSL
EECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2780297 [H]