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The map label for this gene is ydfH [C]

Identifier: 116493625

GI number: 116493625

Start: 48857

End: 49549

Strand: Direct

Name: ydfH [C]

Synonym: LSEI_0052

Alternate gene names: 116493625

Gene position: 48857-49549 (Clockwise)

Preceding gene: 116493623

Following gene: 116493626

Centisome position: 1.69

GC content: 40.69

Gene sequence:

>693_bases
ATGCAGATTTCGAATTATCAAGATGAGGCCTATACTGCCATCAAGCAAATGATTCTCAGCATGCAGCTGACTCCCGGGGA
AAAGGTCGATAAATATGAATTGAGCACGCAGTTAAATATCGGCGTGACCCCGATTCGGGAGGCAATTATTCGCCTGCGTC
GGGAGGGCTTATTTGATGTCATTCCACAAAGCGGCACTTATGTATCAAAAATTAATGTGGATGAAATGAATCAAGGCCGA
TTTGCTAGAGTCGAATTGGAAAAAACTATTATTGCTAGCGCTGCTGAGCGTATGACAGCGGATCAAGTTGACGAATTAGA
ACAGCAAATTGCTCTTCAGGGTGTCTATGAACATAATCAAGACTATGGGCACTTTTTCAAATTAGATCATGATTTCCATG
AACTCTTTTACATTGCAGATCACAAACAATTTGTATGGACGTGGGTACAACAAATGAATTTGCAGTTTATTCGTTATCGC
TATCTACAATTAGAAATAAACGGCATGCACTGGCATCACATTATTGCAGAACATCAGGCAATTGTGGATGCAGTTAAGGC
AAAGGATACAGGGTTGGCAAGTCAGATGGCCACCGATCACTTGTTAGCAGTTGGTAAAGATGTCAAATCAGTTTTAACCA
CTTATCCTGATTATTTTAAAAGTCATGAATCGAACGAGCCTCAGTTAACCTGA

Upstream 100 bases:

>100_bases
TTTGCTAGAAGTCTCTATAATTTTGGGAGCGAAGCAACATCTTTCTAAAAAAATAAAAGTGTTATACAATAAAATCGATA
AAAAAGGAAGCGTGACGTAC

Downstream 100 bases:

>100_bases
CTGTGTTCTTGCTCGCGGAATGATTCAGTTAATCAATGACGTCTGAAAACGTAGATTTTTAACAATCCTGTTTTCAGGCG
TTTTTGTGTACGGTCAGCTA

Product: transcriptional regulator

Products: NA

Alternate protein names: ORF 1 [H]

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MQISNYQDEAYTAIKQMILSMQLTPGEKVDKYELSTQLNIGVTPIREAIIRLRREGLFDVIPQSGTYVSKINVDEMNQGR
FARVELEKTIIASAAERMTADQVDELEQQIALQGVYEHNQDYGHFFKLDHDFHELFYIADHKQFVWTWVQQMNLQFIRYR
YLQLEINGMHWHHIIAEHQAIVDAVKAKDTGLASQMATDHLLAVGKDVKSVLTTYPDYFKSHESNEPQLT

Sequences:

>Translated_230_residues
MQISNYQDEAYTAIKQMILSMQLTPGEKVDKYELSTQLNIGVTPIREAIIRLRREGLFDVIPQSGTYVSKINVDEMNQGR
FARVELEKTIIASAAERMTADQVDELEQQIALQGVYEHNQDYGHFFKLDHDFHELFYIADHKQFVWTWVQQMNLQFIRYR
YLQLEINGMHWHHIIAEHQAIVDAVKAKDTGLASQMATDHLLAVGKDVKSVLTTYPDYFKSHESNEPQLT
>Mature_230_residues
MQISNYQDEAYTAIKQMILSMQLTPGEKVDKYELSTQLNIGVTPIREAIIRLRREGLFDVIPQSGTYVSKINVDEMNQGR
FARVELEKTIIASAAERMTADQVDELEQQIALQGVYEHNQDYGHFFKLDHDFHELFYIADHKQFVWTWVQQMNLQFIRYR
YLQLEINGMHWHHIIAEHQAIVDAVKAKDTGLASQMATDHLLAVGKDVKSVLTTYPDYFKSHESNEPQLT

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=209, Percent_Identity=26.7942583732057, Blast_Score=103, Evalue=1e-23,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26719; Mature: 26719

Theoretical pI: Translated: 5.51; Mature: 5.51

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQISNYQDEAYTAIKQMILSMQLTPGEKVDKYELSTQLNIGVTPIREAIIRLRREGLFDV
CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEECCEEEECCCHHHHHHHHHHHHCCHHHC
IPQSGTYVSKINVDEMNQGRFARVELEKTIIASAAERMTADQVDELEQQIALQGVYEHNQ
CCCCCCEEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DYGHFFKLDHDFHELFYIADHKQFVWTWVQQMNLQFIRYRYLQLEINGMHWHHIIAEHQA
CCCCEEEECCCHHHEEEEECCHHHHHHHHHHHHHHHHEEEEEEEEECCCCHHHHHHHHHH
IVDAVKAKDTGLASQMATDHLLAVGKDVKSVLTTYPDYFKSHESNEPQLT
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCC
>Mature Secondary Structure
MQISNYQDEAYTAIKQMILSMQLTPGEKVDKYELSTQLNIGVTPIREAIIRLRREGLFDV
CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEECCEEEECCCHHHHHHHHHHHHCCHHHC
IPQSGTYVSKINVDEMNQGRFARVELEKTIIASAAERMTADQVDELEQQIALQGVYEHNQ
CCCCCCEEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DYGHFFKLDHDFHELFYIADHKQFVWTWVQQMNLQFIRYRYLQLEINGMHWHHIIAEHQA
CCCCEEEECCCHHHEEEEECCHHHHHHHHHHHHHHHHEEEEEEEEECCCCHHHHHHHHHH
IVDAVKAKDTGLASQMATDHLLAVGKDVKSVLTTYPDYFKSHESNEPQLT
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8277241; 1612449 [H]