Click here to switch to the map view.

The map label for this gene is ssb2 [H]

Identifier: 116493582

GI number: 116493582

Start: 10533

End: 10964

Strand: Direct

Name: ssb2 [H]

Synonym: LSEI_0008

Alternate gene names: 116493582

Gene position: 10533-10964 (Clockwise)

Preceding gene: 116493580

Following gene: 116493583

Centisome position: 0.36

GC content: 50.46

Gene sequence:

>432_bases
ATGTTGAATAGTGTGAGTCTAACAGGGCGGTTGACCAAGGAACCTGAAGTTTTCCGAACGGCTAACGAGCTTGATATCGT
CCGATTTACGTTGGCGGTGAATCGCGTTTTCAAGAATAAAACGGGACAGCGCGAGACTGATTTTATTGAGTGTGTCATTT
TTGGCAAACGCGCCTTAACTTTTGCGGGATCAACTACCAAAGGGTCATTGTTGGGTATTTCAGGGCGGCTGAGTAATAAT
CATTTTGAAAATAAGCAAGGTGAGCAAGTGTGGCGGACCGCTGTCGTCGTTGATAATTTTGCTTGGTTGGAGTCGCGAGC
CACGACGGAAAGCCGCCGGGCAGGGACCTTGCAGGCGACAGGAACAGACGACGTCATGCCAGTAGAGGAAGGCACCCCGC
CACAGGTCGCAACCGACGATCTGCCATTTTAG

Upstream 100 bases:

>100_bases
GGTGTTGTGCAAGCAACCATGCAGAAGAAAGGTCATTGCGGTCAAGGTCCTTATGTGCAGGTTGCTGCACCAGTGAACGC
GTTTAGAGGAGGAGAAGCGA

Downstream 100 bases:

>100_bases
TGGTGGTATTCGCCGCGGATCTATGCTACAATTTTAACTCGTGAGTATCCGGCTATTCTATAGCCTTAGTACTCTCCTTG
CTCCGGCAAATGACCGGGGC

Product: single-stranded DNA-binding protein

Products: NA

Alternate protein names: SSB 2; Helix-destabilizing protein 2 [H]

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MLNSVSLTGRLTKEPEVFRTANELDIVRFTLAVNRVFKNKTGQRETDFIECVIFGKRALTFAGSTTKGSLLGISGRLSNN
HFENKQGEQVWRTAVVVDNFAWLESRATTESRRAGTLQATGTDDVMPVEEGTPPQVATDDLPF

Sequences:

>Translated_143_residues
MLNSVSLTGRLTKEPEVFRTANELDIVRFTLAVNRVFKNKTGQRETDFIECVIFGKRALTFAGSTTKGSLLGISGRLSNN
HFENKQGEQVWRTAVVVDNFAWLESRATTESRRAGTLQATGTDDVMPVEEGTPPQVATDDLPF
>Mature_143_residues
MLNSVSLTGRLTKEPEVFRTANELDIVRFTLAVNRVFKNKTGQRETDFIECVIFGKRALTFAGSTTKGSLLGISGRLSNN
HFENKQGEQVWRTAVVVDNFAWLESRATTESRRAGTLQATGTDDVMPVEEGTPPQVATDDLPF

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair [H]

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

None

Paralogues:

None

Copy number: 1622 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 15823; Mature: 15823

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNSVSLTGRLTKEPEVFRTANELDIVRFTLAVNRVFKNKTGQRETDFIECVIFGKRALT
CCCCCCCCEECCCCCHHHHCCCCCCEEHHHHHHHHHHHCCCCCCCCCEEEEEEECCEEEE
FAGSTTKGSLLGISGRLSNNHFENKQGEQVWRTAVVVDNFAWLESRATTESRRAGTLQAT
EECCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCEEEEC
GTDDVMPVEEGTPPQVATDDLPF
CCCCCEECCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLNSVSLTGRLTKEPEVFRTANELDIVRFTLAVNRVFKNKTGQRETDFIECVIFGKRALT
CCCCCCCCEECCCCCHHHHCCCCCCEEHHHHHHHHHHHCCCCCCCCCEEEEEEECCEEEE
FAGSTTKGSLLGISGRLSNNHFENKQGEQVWRTAVVVDNFAWLESRATTESRRAGTLQAT
EECCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCEEEEC
GTDDVMPVEEGTPPQVATDDLPF
CCCCCEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA