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The map label for this gene is ywcD [H]

Identifier: 116493339

GI number: 116493339

Start: 1587769

End: 1588188

Strand: Direct

Name: ywcD [H]

Synonym: PEPE_1611

Alternate gene names: 116493339

Gene position: 1587769-1588188 (Clockwise)

Preceding gene: 116493336

Following gene: 116493342

Centisome position: 86.65

GC content: 32.38

Gene sequence:

>420_bases
ATGCTTAATCAACTATTTTACAAGTACAAGTCTGTTATATCATATCTCTTTTGGGGCGTGGTAACCACCATCGTAAATAT
TGGTGTCTTTGCCATTCTATCAGATTACTTACATCTGTTCTACCAAGTTAGTAATGTAATTGCTTGGTTTGTTTCCGTGC
TTGTGGCTTATGTTAGTAATAAACTTTGGGTTTTTAATTCTCATACTGAAACTACTGGTCAACTTGTAACCGAAGCAGTT
CGATTCTTCTTAATGCGAACAGCCACTTTAGCAATTGATATTATTATTTTATATATTGGAATTACGCTTCTAAACGGAAA
CGATATTATCGTGAAAATTATTGATAATGTCGTTGTTGTCATTTCAAACTATGCGTTTAGTAAAATGGTCGTATTCAAAA
ACAAACAAAAATGGGATTAA

Upstream 100 bases:

>100_bases
AAACTACTTCACCTATCCAAACTATTAAATAAACTTTCTTTTTTTGTACTTTCATGTTTTACTTAATAAGTTAACCTTAC
AATGATTCGGAGATGACATC

Downstream 100 bases:

>100_bases
ATCCCATTTTTTTATTGTTCAAATTTAGCAATAGCTTCGGTTTCATCTAAAATTTCGATTCCTAAAGCTTGTGCCTTAGT
TAATTTACTACCAGCATCGG

Product: GtcA family membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MLNQLFYKYKSVISYLFWGVVTTIVNIGVFAILSDYLHLFYQVSNVIAWFVSVLVAYVSNKLWVFNSHTETTGQLVTEAV
RFFLMRTATLAIDIIILYIGITLLNGNDIIVKIIDNVVVVISNYAFSKMVVFKNKQKWD

Sequences:

>Translated_139_residues
MLNQLFYKYKSVISYLFWGVVTTIVNIGVFAILSDYLHLFYQVSNVIAWFVSVLVAYVSNKLWVFNSHTETTGQLVTEAV
RFFLMRTATLAIDIIILYIGITLLNGNDIIVKIIDNVVVVISNYAFSKMVVFKNKQKWD
>Mature_139_residues
MLNQLFYKYKSVISYLFWGVVTTIVNIGVFAILSDYLHLFYQVSNVIAWFVSVLVAYVSNKLWVFNSHTETTGQLVTEAV
RFFLMRTATLAIDIIILYIGITLLNGNDIIVKIIDNVVVVISNYAFSKMVVFKNKQKWD

Specific function: Unknown

COG id: COG2246

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gtrA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007267 [H]

Pfam domain/function: PF04138 GtrA [H]

EC number: NA

Molecular weight: Translated: 15986; Mature: 15986

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNQLFYKYKSVISYLFWGVVTTIVNIGVFAILSDYLHLFYQVSNVIAWFVSVLVAYVSN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
KLWVFNSHTETTGQLVTEAVRFFLMRTATLAIDIIILYIGITLLNGNDIIVKIIDNVVVV
CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
ISNYAFSKMVVFKNKQKWD
HHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLNQLFYKYKSVISYLFWGVVTTIVNIGVFAILSDYLHLFYQVSNVIAWFVSVLVAYVSN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
KLWVFNSHTETTGQLVTEAVRFFLMRTATLAIDIIILYIGITLLNGNDIIVKIIDNVVVV
CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
ISNYAFSKMVVFKNKQKWD
HHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]