Click here to switch to the map view.

The map label for this gene is yidA [C]

Identifier: 116493303

GI number: 116493303

Start: 1544582

End: 1545394

Strand: Direct

Name: yidA [C]

Synonym: PEPE_1575

Alternate gene names: 116493303

Gene position: 1544582-1545394 (Clockwise)

Preceding gene: 116493302

Following gene: 116493305

Centisome position: 84.29

GC content: 39.98

Gene sequence:

>813_bases
TTGAGTATAAAATTAATCGCCATCGACCTTGATGGCACCCTTTTAAATGACAACAAACAACTTACAGAAGCAAATATCGC
GGCCATCAACGCTGCTTCTAAAATCGGGATTAACGTCGTCCTTTGTACCGGACGTCCCATTACAGGAATTCAACGTTACC
TCACCCAACTAGACCTTACTAACGAAAAGGAATATGCCGTCACTTATAATGGAGCACTCGCTCAAACTCTGACTGGCGAA
ACCCTCATTAAACACACACTTTCCTTTGAAGACTATCTCACTGCTGAAGCATTTAGCCGTAAAATTGGTGTGCATTTCCA
CGTAGATGGTAAAAATCACATTTACACTGCCAATAAGAATATCAGCACTTATACGGTAGGTGAAAGTTTTCTAGTTGAAA
TGGGTCTTCGCTATCGCGCCGTTAATGAAATGGACCCTAACTTAGAAATGCCCAAGGTAATGTTCATTGATGATCCTAAA
GTTTTAAGTAAAGCGCGCGACCAGATTTTTGCTAAGTTCCAAGACAACTTTAGCGTCGTTCAAAGTGAACCATACTTTAT
TGAACTTATGCCCCAAAACGTTAGCAAAGGTAATGCTGTAACTGAGTTAGCTGCACGTCTTAACCTTACTTTAGACCAAG
TCATGGCAATTGGTGATCAAGGTAATGACCTTTCCATGATTAAAGCTGCCGGAACTGGTGTAGCAATGGAAAATGCAATT
GATGAAGTTAAACAAAATGCACAATTCATTACGGCCAATAATAACGAAAGTGGCGTTGCCAAAGCCATTCAAAAATTTGT
ACTAGAAAAATGA

Upstream 100 bases:

>100_bases
AGGAAATGCTTATAGATAGTAACGAGAGTTTGTTTACAGATACTTTTGAAGCTTTTCAAGCTCATATCAAAAACAATATA
ATTAGTTAGGAGTAATAATC

Downstream 100 bases:

>100_bases
AACTAGGATCGCATTAACAATTAGAATCAAAGCATAGCTTAGTATTAAACGAGTAAATGGGGTGAACCGCATGGGCTCGT
TTTTTTGTGCAGCAATTTCT

Product: HAD superfamily hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 269

Protein sequence:

>270_residues
MSIKLIAIDLDGTLLNDNKQLTEANIAAINAASKIGINVVLCTGRPITGIQRYLTQLDLTNEKEYAVTYNGALAQTLTGE
TLIKHTLSFEDYLTAEAFSRKIGVHFHVDGKNHIYTANKNISTYTVGESFLVEMGLRYRAVNEMDPNLEMPKVMFIDDPK
VLSKARDQIFAKFQDNFSVVQSEPYFIELMPQNVSKGNAVTELAARLNLTLDQVMAIGDQGNDLSMIKAAGTGVAMENAI
DEVKQNAQFITANNNESGVAKAIQKFVLEK

Sequences:

>Translated_270_residues
MSIKLIAIDLDGTLLNDNKQLTEANIAAINAASKIGINVVLCTGRPITGIQRYLTQLDLTNEKEYAVTYNGALAQTLTGE
TLIKHTLSFEDYLTAEAFSRKIGVHFHVDGKNHIYTANKNISTYTVGESFLVEMGLRYRAVNEMDPNLEMPKVMFIDDPK
VLSKARDQIFAKFQDNFSVVQSEPYFIELMPQNVSKGNAVTELAARLNLTLDQVMAIGDQGNDLSMIKAAGTGVAMENAI
DEVKQNAQFITANNNESGVAKAIQKFVLEK
>Mature_269_residues
SIKLIAIDLDGTLLNDNKQLTEANIAAINAASKIGINVVLCTGRPITGIQRYLTQLDLTNEKEYAVTYNGALAQTLTGET
LIKHTLSFEDYLTAEAFSRKIGVHFHVDGKNHIYTANKNISTYTVGESFLVEMGLRYRAVNEMDPNLEMPKVMFIDDPKV
LSKARDQIFAKFQDNFSVVQSEPYFIELMPQNVSKGNAVTELAARLNLTLDQVMAIGDQGNDLSMIKAAGTGVAMENAID
EVKQNAQFITANNNESGVAKAIQKFVLEK

Specific function: Catalyzes the dephosphorylation of the artificial chromogenic substrate p-nitrophenyl phosphate (pNPP) and of the natural substrates erythrose 4-phosphate and mannose 1-phosphate [H]

COG id: COG0561

COG function: function code R; Predicted hydrolases of the HAD superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HAD-like hydrolase superfamily. Cof family [H]

Homologues:

Organism=Escherichia coli, GI2367265, Length=269, Percent_Identity=46.4684014869888, Blast_Score=246, Evalue=1e-66,
Organism=Escherichia coli, GI87081741, Length=245, Percent_Identity=27.3469387755102, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787043, Length=281, Percent_Identity=28.8256227758007, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI48994981, Length=282, Percent_Identity=27.3049645390071, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87081790, Length=271, Percent_Identity=28.7822878228782, Blast_Score=71, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023214
- InterPro:   IPR013200
- InterPro:   IPR006379
- InterPro:   IPR000150 [H]

Pfam domain/function: PF08282 Hydrolase_3 [H]

EC number: NA

Molecular weight: Translated: 29742; Mature: 29611

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: PS01228 COF_1 ; PS01229 COF_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIKLIAIDLDGTLLNDNKQLTEANIAAINAASKIGINVVLCTGRPITGIQRYLTQLDLT
CEEEEEEEECCCEEECCCCCHHHHHEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHCCC
NEKEYAVTYNGALAQTLTGETLIKHTLSFEDYLTAEAFSRKIGVHFHVDGKNHIYTANKN
CCCCEEEEECCEEHHHHCHHHHHHHHCCHHHHHHHHHHHHHCCEEEEECCCCEEEEECCC
ISTYTVGESFLVEMGLRYRAVNEMDPNLEMPKVMFIDDPKVLSKARDQIFAKFQDNFSVV
CEEEECCHHHHHHHCCCEEECCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEE
QSEPYFIELMPQNVSKGNAVTELAARLNLTLDQVMAIGDQGNDLSMIKAAGTGVAMENAI
ECCCEEEEEECCCCCCCHHHHHHHHHHCCCHHHHHEECCCCCCEEEEEECCCCCHHHHHH
DEVKQNAQFITANNNESGVAKAIQKFVLEK
HHHHCCCEEEEECCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
SIKLIAIDLDGTLLNDNKQLTEANIAAINAASKIGINVVLCTGRPITGIQRYLTQLDLT
EEEEEEEECCCEEECCCCCHHHHHEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHCCC
NEKEYAVTYNGALAQTLTGETLIKHTLSFEDYLTAEAFSRKIGVHFHVDGKNHIYTANKN
CCCCEEEEECCEEHHHHCHHHHHHHHCCHHHHHHHHHHHHHCCEEEEECCCCEEEEECCC
ISTYTVGESFLVEMGLRYRAVNEMDPNLEMPKVMFIDDPKVLSKARDQIFAKFQDNFSVV
CEEEECCHHHHHHHCCCEEECCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEE
QSEPYFIELMPQNVSKGNAVTELAARLNLTLDQVMAIGDQGNDLSMIKAAGTGVAMENAI
ECCCEEEEEECCCCCCCHHHHHHHHHHCCCHHHHHEECCCCCCEEEEEECCCCCHHHHHH
DEVKQNAQFITANNNESGVAKAIQKFVLEK
HHHHCCCEEEEECCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA