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The map label for this gene is ydcI [H]

Identifier: 116493258

GI number: 116493258

Start: 1487732

End: 1489900

Strand: Reverse

Name: ydcI [H]

Synonym: PEPE_1521

Alternate gene names: 116493258

Gene position: 1489900-1487732 (Counterclockwise)

Preceding gene: 116493259

Following gene: 116493257

Centisome position: 81.31

GC content: 39.33

Gene sequence:

>2169_bases
TTGGAAGAAAAAATTTTAAAAATTGTCGGAACTAAGTTAAAAGATTATCGAGCAAATCAAATTAAAGCTACACTAGAAAT
GCTAGAGGATGGAAATACAGTTCCCTTTATCGCTCGGTATCGAAAAGAACGAACTCAAAGTTTAGATGAAGTTCAAATTC
GGGAAATTCAAGCAACGTACCATCAGACTGAAACACTTGAAAAAAGAAAAGCCGATGTTTTAAAAAATATTGAAGATCAA
CAAAAATTAACTCCAGAATTGGCGCAAAAGATTCGTACAGCCGACGCCCTACAAACGGTAGAAGACTTGTATTTACCCTA
CAAACAAAAACGGCGGACGAAAGCGACAATTGCTAAGGAAGCAGGTTTAGAACCGATTGCAACCTGGATTTTGGGTTTTC
CACAAGGAACTTTAGCTAAGCAACTTCAAAGTGCGATTAATCCAGAACAGGATCTTAATAGTGTTGACGATGTTTTAGCA
GGAGTTCACGAAATATTAGCCGAAGCCTTCTCGGACCAGGCTGATATCCGTGAATGGGTGCGAAGTTATACCAAAAAAAA
TGGACGATTAACGGCAGAAATAAAGCCCAAGGGCCAAGCAATTGATGAGAACGGTGTTTATGGGATTTACTATGACTTCA
GTGAAAAACTGAATCAAGTGGCCTCCCACCAAATTTTAGCGATTAACCGAGGCGAAAAAGAAAAGGTCCTACGAGCTAAA
ATTGAGGTTGATCCTCAAGGAATCGAACGATACCTTCACTTTCGTTTGATTGGTAAAAAGACCGGCGAAGCAGTTGGTAT
AGTCGAAGATGCATATCAAGATGCTTATAAACGTTTTATTGGCCCAGCAATTGAACGTGAATTACGTGCAGAACTGACTG
CTATGGGCGACCAACAGGCTATTAAGGTGTTTGGTGAAAACTTATACCATCTCTTGATGCAAGCTCCTCTAAAGGGAAAA
GTAGTCTTAGGTTTTGACCCAGCTTATCGGACCGGTTGTAAGTTGGCGGTTATTGATGAGAACGGTAAATTTTTAGATAA
ATTAGTGATTTATCCACATAAACCAGCTTCAATGGAAAAACGAGCTAAAGCCGGAAAACAATTAAAAGATTTCATTGAGA
AGTACCAAGTTGAAATGATTGCAATTGGAAACGGAACAGCAAGTCGCGAATCAGAAGAATTTGTAGCTAATTTAATTAAA
GAAATTAAGCGTCCCATCTATTATGTAATTGTCAATGAAGCAGGAGCGTCAGTTTATTCTGCTAGTAACGAAGCCCGAGA
GGCATTTCCAGATCTTCAAGTTGAAGAAAGAAGTGCGATTAGTATTGGACGACGCTTACAAGATCCTTTAGCAGAATTGA
TTAAGATCGATCCTCAAGCAGTTGGAGTCGGTCAATATCAACATGATGTTGCGCAAAAAGATTTACATGAACAACTTGAT
AACGTCGTTGAAACGGCCGTTAACCAAGTTGGAGTTAATTTAAATACTGCTAGCCCAGAGTTGCTAACCCATATTTCGGG
GTTAACTAAAACAACCGCTAAAAATATTGTTAATTTTCGAGAGGAAAATGGAAGCTATCATTCTCGCAAACAATTAAAAA
AAGTCCCTCGCTTAGGACCTAAAGCCTATGAACAAGCAATTGGTTTTTTGAGAATTGTTGATGGAGATGATATTTTGGAT
AATACCGGAATCCATCCTGAAAGTTATGCAGTTGTTAAACAATTAGTGCAGTTATTGGGACTAAAATTGCAAGACATTGG
TAAAGCGGAAGTTAACGAAAAACTACAGGGAGTGCAGGTTAAAGCAGTCGCTGAACAGCTTAACGTTGGCTGGGAAACTT
TAGCTGATATTATCGCCGAATTACAGAAACCGGGACGTGATTTGCGAGATGAAATGCCGGCGCCATTACTTCGATCAGAT
GTTCTAACGCTAGAGGACCTTAAACCAGGGATGGAACTTCAAGGGACAGTACGAAATGTAATTGATTTCGGAGCATTTGT
AGATATTGGGGTTAAACAGGACGGTTTAGTCCACATCTCAAAACTAAAGAAAGGTTTTGTAAAGCAACCCAGCGATGTGG
TTGCGGTCGGGGATATTGTTAAAGTTTGGGTTGAAAGTGTAGACGTTGAACGCCACCGAATTCAATTAACAATGATTCCT
AAGGATTAA

Upstream 100 bases:

>100_bases
GCTTGCATAATGTTTAATATAGCAACATGAGAGGTTGAGGGAGAAGTTGGTTCCTCAGCCTCTTCTTGTTAGATTATTAA
GATAATGGGAGAAAATGATT

Downstream 100 bases:

>100_bases
AATGACAGATTTAGAATTGCAACAATTAACTCAACGCATTGCTCAAGAGTCCTTTGGCAAAAGTTTTCCGTATAAGGTGG
TCTTTAATCAACGTTTAAAA

Product: transcriptional accessory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 722; Mature: 722

Protein sequence:

>722_residues
MEEKILKIVGTKLKDYRANQIKATLEMLEDGNTVPFIARYRKERTQSLDEVQIREIQATYHQTETLEKRKADVLKNIEDQ
QKLTPELAQKIRTADALQTVEDLYLPYKQKRRTKATIAKEAGLEPIATWILGFPQGTLAKQLQSAINPEQDLNSVDDVLA
GVHEILAEAFSDQADIREWVRSYTKKNGRLTAEIKPKGQAIDENGVYGIYYDFSEKLNQVASHQILAINRGEKEKVLRAK
IEVDPQGIERYLHFRLIGKKTGEAVGIVEDAYQDAYKRFIGPAIERELRAELTAMGDQQAIKVFGENLYHLLMQAPLKGK
VVLGFDPAYRTGCKLAVIDENGKFLDKLVIYPHKPASMEKRAKAGKQLKDFIEKYQVEMIAIGNGTASRESEEFVANLIK
EIKRPIYYVIVNEAGASVYSASNEAREAFPDLQVEERSAISIGRRLQDPLAELIKIDPQAVGVGQYQHDVAQKDLHEQLD
NVVETAVNQVGVNLNTASPELLTHISGLTKTTAKNIVNFREENGSYHSRKQLKKVPRLGPKAYEQAIGFLRIVDGDDILD
NTGIHPESYAVVKQLVQLLGLKLQDIGKAEVNEKLQGVQVKAVAEQLNVGWETLADIIAELQKPGRDLRDEMPAPLLRSD
VLTLEDLKPGMELQGTVRNVIDFGAFVDIGVKQDGLVHISKLKKGFVKQPSDVVAVGDIVKVWVESVDVERHRIQLTMIP
KD

Sequences:

>Translated_722_residues
MEEKILKIVGTKLKDYRANQIKATLEMLEDGNTVPFIARYRKERTQSLDEVQIREIQATYHQTETLEKRKADVLKNIEDQ
QKLTPELAQKIRTADALQTVEDLYLPYKQKRRTKATIAKEAGLEPIATWILGFPQGTLAKQLQSAINPEQDLNSVDDVLA
GVHEILAEAFSDQADIREWVRSYTKKNGRLTAEIKPKGQAIDENGVYGIYYDFSEKLNQVASHQILAINRGEKEKVLRAK
IEVDPQGIERYLHFRLIGKKTGEAVGIVEDAYQDAYKRFIGPAIERELRAELTAMGDQQAIKVFGENLYHLLMQAPLKGK
VVLGFDPAYRTGCKLAVIDENGKFLDKLVIYPHKPASMEKRAKAGKQLKDFIEKYQVEMIAIGNGTASRESEEFVANLIK
EIKRPIYYVIVNEAGASVYSASNEAREAFPDLQVEERSAISIGRRLQDPLAELIKIDPQAVGVGQYQHDVAQKDLHEQLD
NVVETAVNQVGVNLNTASPELLTHISGLTKTTAKNIVNFREENGSYHSRKQLKKVPRLGPKAYEQAIGFLRIVDGDDILD
NTGIHPESYAVVKQLVQLLGLKLQDIGKAEVNEKLQGVQVKAVAEQLNVGWETLADIIAELQKPGRDLRDEMPAPLLRSD
VLTLEDLKPGMELQGTVRNVIDFGAFVDIGVKQDGLVHISKLKKGFVKQPSDVVAVGDIVKVWVESVDVERHRIQLTMIP
KD
>Mature_722_residues
MEEKILKIVGTKLKDYRANQIKATLEMLEDGNTVPFIARYRKERTQSLDEVQIREIQATYHQTETLEKRKADVLKNIEDQ
QKLTPELAQKIRTADALQTVEDLYLPYKQKRRTKATIAKEAGLEPIATWILGFPQGTLAKQLQSAINPEQDLNSVDDVLA
GVHEILAEAFSDQADIREWVRSYTKKNGRLTAEIKPKGQAIDENGVYGIYYDFSEKLNQVASHQILAINRGEKEKVLRAK
IEVDPQGIERYLHFRLIGKKTGEAVGIVEDAYQDAYKRFIGPAIERELRAELTAMGDQQAIKVFGENLYHLLMQAPLKGK
VVLGFDPAYRTGCKLAVIDENGKFLDKLVIYPHKPASMEKRAKAGKQLKDFIEKYQVEMIAIGNGTASRESEEFVANLIK
EIKRPIYYVIVNEAGASVYSASNEAREAFPDLQVEERSAISIGRRLQDPLAELIKIDPQAVGVGQYQHDVAQKDLHEQLD
NVVETAVNQVGVNLNTASPELLTHISGLTKTTAKNIVNFREENGSYHSRKQLKKVPRLGPKAYEQAIGFLRIVDGDDILD
NTGIHPESYAVVKQLVQLLGLKLQDIGKAEVNEKLQGVQVKAVAEQLNVGWETLADIIAELQKPGRDLRDEMPAPLLRSD
VLTLEDLKPGMELQGTVRNVIDFGAFVDIGVKQDGLVHISKLKKGFVKQPSDVVAVGDIVKVWVESVDVERHRIQLTMIP
KD

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=768, Percent_Identity=34.6354166666667, Blast_Score=419, Evalue=1e-117,
Organism=Homo sapiens, GI27597090, Length=633, Percent_Identity=24.0126382306477, Blast_Score=100, Evalue=8e-21,
Organism=Escherichia coli, GI87082262, Length=733, Percent_Identity=43.5197817189632, Blast_Score=545, Evalue=1e-156,
Organism=Escherichia coli, GI1787140, Length=75, Percent_Identity=48, Blast_Score=70, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17511129, Length=721, Percent_Identity=30.374479889043, Blast_Score=264, Evalue=1e-70,
Organism=Caenorhabditis elegans, GI17552892, Length=374, Percent_Identity=25.1336898395722, Blast_Score=82, Evalue=8e-16,
Organism=Drosophila melanogaster, GI62484314, Length=740, Percent_Identity=33.6486486486486, Blast_Score=381, Evalue=1e-105,
Organism=Drosophila melanogaster, GI24640080, Length=577, Percent_Identity=23.3968804159445, Blast_Score=87, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 80956; Mature: 80956

Theoretical pI: Translated: 6.48; Mature: 6.48

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEKILKIVGTKLKDYRANQIKATLEMLEDGNTVPFIARYRKERTQSLDEVQIREIQATY
CCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHH
HQTETLEKRKADVLKNIEDQQKLTPELAQKIRTADALQTVEDLYLPYKQKRRTKATIAKE
HHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
AGLEPIATWILGFPQGTLAKQLQSAINPEQDLNSVDDVLAGVHEILAEAFSDQADIREWV
CCCHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
RSYTKKNGRLTAEIKPKGQAIDENGVYGIYYDFSEKLNQVASHQILAINRGEKEKVLRAK
HHHHCCCCEEEEEECCCCCCCCCCCEEEEEECHHHHHHHHHCCEEEEECCCCHHHHHHHH
IEVDPQGIERYLHFRLIGKKTGEAVGIVEDAYQDAYKRFIGPAIERELRAELTAMGDQQA
CCCCHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHH
IKVFGENLYHLLMQAPLKGKVVLGFDPAYRTGCKLAVIDENGKFLDKLVIYPHKPASMEK
HHHHHHHHHHHHHHCCCCCCEEEECCHHHHCCCEEEEECCCCCEEHHHEECCCCCCCHHH
RAKAGKQLKDFIEKYQVEMIAIGNGTASRESEEFVANLIKEIKRPIYYVIVNEAGASVYS
HHHHHHHHHHHHHHHCEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCHHHH
ASNEAREAFPDLQVEERSAISIGRRLQDPLAELIKIDPQAVGVGQYQHDVAQKDLHEQLD
CCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
NVVETAVNQVGVNLNTASPELLTHISGLTKTTAKNIVNFREENGSYHSRKQLKKVPRLGP
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCH
KAYEQAIGFLRIVDGDDILDNTGIHPESYAVVKQLVQLLGLKLQDIGKAEVNEKLQGVQV
HHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHCCHH
KAVAEQLNVGWETLADIIAELQKPGRDLRDEMPAPLLRSDVLTLEDLKPGMELQGTVRNV
HHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHCCCCHHHHCCCCHHHCCCCCCHHHHHHHH
IDFGAFVDIGVKQDGLVHISKLKKGFVKQPSDVVAVGDIVKVWVESVDVERHRIQLTMIP
HHHCCCEEECCCCCCCEEHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEEC
KD
CC
>Mature Secondary Structure
MEEKILKIVGTKLKDYRANQIKATLEMLEDGNTVPFIARYRKERTQSLDEVQIREIQATY
CCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHH
HQTETLEKRKADVLKNIEDQQKLTPELAQKIRTADALQTVEDLYLPYKQKRRTKATIAKE
HHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
AGLEPIATWILGFPQGTLAKQLQSAINPEQDLNSVDDVLAGVHEILAEAFSDQADIREWV
CCCHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
RSYTKKNGRLTAEIKPKGQAIDENGVYGIYYDFSEKLNQVASHQILAINRGEKEKVLRAK
HHHHCCCCEEEEEECCCCCCCCCCCEEEEEECHHHHHHHHHCCEEEEECCCCHHHHHHHH
IEVDPQGIERYLHFRLIGKKTGEAVGIVEDAYQDAYKRFIGPAIERELRAELTAMGDQQA
CCCCHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHH
IKVFGENLYHLLMQAPLKGKVVLGFDPAYRTGCKLAVIDENGKFLDKLVIYPHKPASMEK
HHHHHHHHHHHHHHCCCCCCEEEECCHHHHCCCEEEEECCCCCEEHHHEECCCCCCCHHH
RAKAGKQLKDFIEKYQVEMIAIGNGTASRESEEFVANLIKEIKRPIYYVIVNEAGASVYS
HHHHHHHHHHHHHHHCEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCHHHH
ASNEAREAFPDLQVEERSAISIGRRLQDPLAELIKIDPQAVGVGQYQHDVAQKDLHEQLD
CCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
NVVETAVNQVGVNLNTASPELLTHISGLTKTTAKNIVNFREENGSYHSRKQLKKVPRLGP
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCH
KAYEQAIGFLRIVDGDDILDNTGIHPESYAVVKQLVQLLGLKLQDIGKAEVNEKLQGVQV
HHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHCCHH
KAVAEQLNVGWETLADIIAELQKPGRDLRDEMPAPLLRSDVLTLEDLKPGMELQGTVRNV
HHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHCCCCHHHHCCCCHHHCCCCCCHHHHHHHH
IDFGAFVDIGVKQDGLVHISKLKKGFVKQPSDVVAVGDIVKVWVESVDVERHRIQLTMIP
HHHCCCEEECCCCCCCEEHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEEC
KD
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]