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The map label for this gene is 116493235

Identifier: 116493235

GI number: 116493235

Start: 1464563

End: 1465156

Strand: Reverse

Name: 116493235

Synonym: PEPE_1497

Alternate gene names: NA

Gene position: 1465156-1464563 (Counterclockwise)

Preceding gene: 116493236

Following gene: 116493234

Centisome position: 79.96

GC content: 31.82

Gene sequence:

>594_bases
ATGGCGAAACAAGGTAGTTTGGAAGAATTGGATGAGCTTGAAATAGTTCAACAAATAAAAAACAATGATTCAAGTAATTT
TGAAATTCTATTTAAGCGATATATTCCAATTATTAAAAAATTAAGAACAAGATATTCGATTCGTAATCTAGAATGGGATG
ATTGGTTGCAAGAAGGACGCATCGTTTTCTTCAACTCGGTAGTTAATTTTGATGAAAATTTAAAAATTACTTTGGGGGCT
TTTTTTCGAACTAATTTTACTAATCGAATTTATAGTATCTTAAGATTTGAGATGGCCTATAAAAGAAAAGCGGGTCTGAC
GGCGCAATCGATAGAAAGTGTTGATGGTGATTTAGAAACAGCAACTAAGAAAATTTCTAAGATTACACCGCATAGTAATT
TAGTCATTAAGGAGAGTTATGCGGAATATGAATCATTGTTATCAAAATTTGAAAAAGAAGTTTCAGTGCTGTTGTTTAAA
GGAAATTGCCCAGAAGAAATTGCGGAAAAACTTGGTTATGAGGTGATTAAGATCCAAAATGCGATAGTACGGTGTAAACA
AAAATTAAGTGAACAAATGTATGGTCGCCCTTAA

Upstream 100 bases:

>100_bases
TTGGAATGCCAATTATTCGTTTTTTATTTACGAAAAATGCGGTTAGAAAATTTTAACAACCTTGCTAAGATCGTTTCCAT
TGAAACAGGGAGGAAGCGTA

Downstream 100 bases:

>100_bases
TTGACAATCAGGGTTGCACATGCTAAAGTTTAATTTCGATAAGGAGGGATTTTTTATGTCCCAAAAGAAAGTAGCTTTAG
CATGTACTGTTTGTGGTTCA

Product: ComX

Products: NA

Alternate protein names: RNA Polymerase Sigma-70 Factor Family Protein; RNA Polymerase Sigma-70 Subunit; RNA Polymerase Sigma-30 Factor

Number of amino acids: Translated: 197; Mature: 196

Protein sequence:

>197_residues
MAKQGSLEELDELEIVQQIKNNDSSNFEILFKRYIPIIKKLRTRYSIRNLEWDDWLQEGRIVFFNSVVNFDENLKITLGA
FFRTNFTNRIYSILRFEMAYKRKAGLTAQSIESVDGDLETATKKISKITPHSNLVIKESYAEYESLLSKFEKEVSVLLFK
GNCPEEIAEKLGYEVIKIQNAIVRCKQKLSEQMYGRP

Sequences:

>Translated_197_residues
MAKQGSLEELDELEIVQQIKNNDSSNFEILFKRYIPIIKKLRTRYSIRNLEWDDWLQEGRIVFFNSVVNFDENLKITLGA
FFRTNFTNRIYSILRFEMAYKRKAGLTAQSIESVDGDLETATKKISKITPHSNLVIKESYAEYESLLSKFEKEVSVLLFK
GNCPEEIAEKLGYEVIKIQNAIVRCKQKLSEQMYGRP
>Mature_196_residues
AKQGSLEELDELEIVQQIKNNDSSNFEILFKRYIPIIKKLRTRYSIRNLEWDDWLQEGRIVFFNSVVNFDENLKITLGAF
FRTNFTNRIYSILRFEMAYKRKAGLTAQSIESVDGDLETATKKISKITPHSNLVIKESYAEYESLLSKFEKEVSVLLFKG
NCPEEIAEKLGYEVIKIQNAIVRCKQKLSEQMYGRP

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23008; Mature: 22877

Theoretical pI: Translated: 8.61; Mature: 8.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKQGSLEELDELEIVQQIKNNDSSNFEILFKRYIPIIKKLRTRYSIRNLEWDDWLQEGR
CCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCC
IVFFNSVVNFDENLKITLGAFFRTNFTNRIYSILRFEMAYKRKAGLTAQSIESVDGDLET
EEEEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHH
ATKKISKITPHSNLVIKESYAEYESLLSKFEKEVSVLLFKGNCPEEIAEKLGYEVIKIQN
HHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHCHHHHHHHH
AIVRCKQKLSEQMYGRP
HHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AKQGSLEELDELEIVQQIKNNDSSNFEILFKRYIPIIKKLRTRYSIRNLEWDDWLQEGR
CCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCC
IVFFNSVVNFDENLKITLGAFFRTNFTNRIYSILRFEMAYKRKAGLTAQSIESVDGDLET
EEEEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHH
ATKKISKITPHSNLVIKESYAEYESLLSKFEKEVSVLLFKGNCPEEIAEKLGYEVIKIQN
HHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHCHHHHHHHH
AIVRCKQKLSEQMYGRP
HHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA