BacMap

Definition	Pediococcus pentosaceus ATCC 25745, complete genome.
Accession	NC_008525
Length	1,832,387

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The map label for this gene is cbiO2 [H]

Identifier: 116493134

GI number: 116493134

Start: 1377368

End: 1378051

Strand: Reverse

Name: cbiO2 [H]

Synonym: PEPE_1389

Alternate gene names: 116493134

Gene position: 1378051-1377368 (Counterclockwise)

Preceding gene: 116493135

Following gene: 116493133

Centisome position: 75.21

GC content: 36.4

Gene sequence:

>684_bases
TTGGTCAATGTCGATGGACAAATAATTAATGCTAATACTAAAAATAAACAATTAGTTTCCTTACGCCAACATGTAGGGAT
TGTTTTTCAATTTCCTGAAAGCCAACTTTTTGCTGAAACGGTAGTTGATGATGTTAAGTTTGGGCCATTGAACTTTGGAG
TATCAGATACAGAAGCTACGAATCGAGCCAAAGATGCATTACAAAAAGTTAAGCTACCAGAAGAATTTTGGCAGAAGTCA
CCGTTTGAACTTTCTGGTGGACAAATGCGAAGAGTAGCAATTGCAGGTGTGTTGGCAACTAATCCTAAAATCCTTATTTT
AGATGAACCGACCGCTGGATTAGACCCTCAAGGAAGATTTGAAATGATGGAACTTTTTAATGAATTACATCATAAAGAGC
AACTTACCATTCTATTAGTAACCCATCAAATGGATGATGTGGCAAATTATGCAGATAATGTCATTGTGATGGATGGAGGA
CAGATTGTTAAGAATGGTGCTCCGGTTGAAGTTTTTCGAGACACTAAGTGGCTAATAAAACATCAACTAGGATTACCTAA
AGCAGCAAATTTTGCCAGTAAGTTAGCTGATAGGGGAGTTAAATTTGATAAAATGCCACTTGATATTAGTGATCTAGTAC
ATCAGATTGTTAATGTCAAAGATAGGAGGCCAAGTCATGAATAA

Upstream 100 bases:

>100_bases
GATTCCTGATGGATCATATACTGCTATTATTGGTCATACGGGAAGTGGCAAGTCGACGCTGATTCAACATGTTAATGGAC
TCTTACGACCAACCAAGGGC

Downstream 100 bases:

>100_bases
AATTCTATTTGGTCGTTATGTCCCCGGCACCTCATTTGTACATCGAATGGATCCGCGCGCTAAATTGATTTTGAGTTTGA
TCTATATTGTGGCTGTTTTT

Product: ABC-type cobalt transport system, ATPase component

Products: ADP; phosphate; L-glutamine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MVNVDGQIINANTKNKQLVSLRQHVGIVFQFPESQLFAETVVDDVKFGPLNFGVSDTEATNRAKDALQKVKLPEEFWQKS
PFELSGGQMRRVAIAGVLATNPKILILDEPTAGLDPQGRFEMMELFNELHHKEQLTILLVTHQMDDVANYADNVIVMDGG
QIVKNGAPVEVFRDTKWLIKHQLGLPKAANFASKLADRGVKFDKMPLDISDLVHQIVNVKDRRPSHE

Sequences:

>Translated_227_residues
MVNVDGQIINANTKNKQLVSLRQHVGIVFQFPESQLFAETVVDDVKFGPLNFGVSDTEATNRAKDALQKVKLPEEFWQKS
PFELSGGQMRRVAIAGVLATNPKILILDEPTAGLDPQGRFEMMELFNELHHKEQLTILLVTHQMDDVANYADNVIVMDGG
QIVKNGAPVEVFRDTKWLIKHQLGLPKAANFASKLADRGVKFDKMPLDISDLVHQIVNVKDRRPSHE
>Mature_227_residues
MVNVDGQIINANTKNKQLVSLRQHVGIVFQFPESQLFAETVVDDVKFGPLNFGVSDTEATNRAKDALQKVKLPEEFWQKS
PFELSGGQMRRVAIAGVLATNPKILILDEPTAGLDPQGRFEMMELFNELHHKEQLTILLVTHQMDDVANYADNVIVMDGG
QIVKNGAPVEVFRDTKWLIKHQLGLPKAANFASKLADRGVKFDKMPLDISDLVHQIVNVKDRRPSHE

Specific function: Part of the ABC transporter complex CbiONQ involved in cobalt import. Responsible for energy coupling to the transport system [H]

COG id: COG1122

COG function: function code P; ABC-type cobalt transport system, ATPase component

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI9961252, Length=176, Percent_Identity=31.25, Blast_Score=81, Evalue=7e-16,
Organism=Homo sapiens, GI9961250, Length=176, Percent_Identity=31.25, Blast_Score=81, Evalue=7e-16,
Organism=Homo sapiens, GI4505771, Length=176, Percent_Identity=31.25, Blast_Score=81, Evalue=7e-16,
Organism=Homo sapiens, GI42741659, Length=178, Percent_Identity=33.7078651685393, Blast_Score=78, Evalue=7e-15,
Organism=Homo sapiens, GI9955963, Length=171, Percent_Identity=31.5789473684211, Blast_Score=77, Evalue=9e-15,
Organism=Homo sapiens, GI171184400, Length=180, Percent_Identity=30.5555555555556, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI21536376, Length=171, Percent_Identity=27.4853801169591, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI9955968, Length=202, Percent_Identity=28.7128712871287, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI9955966, Length=202, Percent_Identity=28.7128712871287, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI45243524, Length=202, Percent_Identity=28.7128712871287, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI148612844, Length=156, Percent_Identity=30.7692307692308, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI255708477, Length=156, Percent_Identity=30.7692307692308, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI150417984, Length=157, Percent_Identity=31.8471337579618, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI116734710, Length=205, Percent_Identity=27.8048780487805, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI153792144, Length=187, Percent_Identity=27.807486631016, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI21536378, Length=176, Percent_Identity=28.9772727272727, Blast_Score=66, Evalue=2e-11,
Organism=Escherichia coli, GI1787029, Length=167, Percent_Identity=39.5209580838323, Blast_Score=104, Evalue=5e-24,
Organism=Escherichia coli, GI1788225, Length=168, Percent_Identity=40.4761904761905, Blast_Score=103, Evalue=8e-24,
Organism=Escherichia coli, GI1789672, Length=175, Percent_Identity=38.8571428571429, Blast_Score=97, Evalue=7e-22,
Organism=Escherichia coli, GI1786398, Length=176, Percent_Identity=36.3636363636364, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1789032, Length=155, Percent_Identity=36.7741935483871, Blast_Score=96, Evalue=1e-21,
Organism=Escherichia coli, GI1788644, Length=170, Percent_Identity=38.8235294117647, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1787370, Length=174, Percent_Identity=34.4827586206897, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1786872, Length=179, Percent_Identity=35.195530726257, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1788506, Length=182, Percent_Identity=31.3186813186813, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1787089, Length=155, Percent_Identity=34.8387096774194, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI1788761, Length=177, Percent_Identity=34.4632768361582, Blast_Score=87, Evalue=7e-19,
Organism=Escherichia coli, GI1790162, Length=165, Percent_Identity=35.7575757575758, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1789963, Length=182, Percent_Identity=32.4175824175824, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI145693107, Length=155, Percent_Identity=32.258064516129, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1789962, Length=157, Percent_Identity=31.8471337579618, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI87081709, Length=205, Percent_Identity=31.219512195122, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1787759, Length=186, Percent_Identity=28.494623655914, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1789891, Length=157, Percent_Identity=31.8471337579618, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1788450, Length=174, Percent_Identity=28.735632183908, Blast_Score=81, Evalue=4e-17,
Organism=Escherichia coli, GI87082267, Length=180, Percent_Identity=28.3333333333333, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI1789864, Length=176, Percent_Identity=33.5227272727273, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI48994883, Length=186, Percent_Identity=31.1827956989247, Blast_Score=80, Evalue=8e-17,
Organism=Escherichia coli, GI1790467, Length=149, Percent_Identity=31.5436241610738, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI87081791, Length=168, Percent_Identity=30.952380952381, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787712, Length=149, Percent_Identity=34.2281879194631, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1786253, Length=152, Percent_Identity=33.5526315789474, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787758, Length=148, Percent_Identity=32.4324324324324, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1787500, Length=158, Percent_Identity=29.1139240506329, Blast_Score=77, Evalue=6e-16,
Organism=Escherichia coli, GI1786803, Length=130, Percent_Identity=36.9230769230769, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1787112, Length=158, Percent_Identity=33.5443037974684, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786319, Length=153, Percent_Identity=32.0261437908497, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786563, Length=135, Percent_Identity=35.5555555555556, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1786345, Length=123, Percent_Identity=30.8943089430894, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1789873, Length=149, Percent_Identity=30.2013422818792, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787105, Length=151, Percent_Identity=33.7748344370861, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1790544, Length=156, Percent_Identity=28.8461538461538, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI48994997, Length=160, Percent_Identity=31.875, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1789890, Length=117, Percent_Identity=35.042735042735, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1790739, Length=90, Percent_Identity=38.8888888888889, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787548, Length=91, Percent_Identity=34.0659340659341, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787164, Length=82, Percent_Identity=42.6829268292683, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787547, Length=171, Percent_Identity=28.0701754385965, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1789593, Length=155, Percent_Identity=27.741935483871, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786698, Length=142, Percent_Identity=31.6901408450704, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790190, Length=79, Percent_Identity=44.3037974683544, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786703, Length=142, Percent_Identity=32.3943661971831, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI87081834, Length=139, Percent_Identity=32.3741007194245, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI48994943, Length=154, Percent_Identity=28.5714285714286, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1789991, Length=101, Percent_Identity=30.6930693069307, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1786981, Length=182, Percent_Identity=32.4175824175824, Blast_Score=62, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI193208177, Length=162, Percent_Identity=29.6296296296296, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI212646699, Length=172, Percent_Identity=32.5581395348837, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI193202349, Length=158, Percent_Identity=32.2784810126582, Blast_Score=73, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI71992285, Length=167, Percent_Identity=32.3353293413174, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI25146777, Length=185, Percent_Identity=30.8108108108108, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71996809, Length=167, Percent_Identity=31.1377245508982, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI193211015, Length=167, Percent_Identity=31.1377245508982, Blast_Score=70, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI193211017, Length=167, Percent_Identity=31.1377245508982, Blast_Score=70, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17541710, Length=159, Percent_Identity=30.188679245283, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17565938, Length=177, Percent_Identity=27.1186440677966, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71983516, Length=146, Percent_Identity=32.1917808219178, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71983510, Length=146, Percent_Identity=32.1917808219178, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17558664, Length=150, Percent_Identity=32, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17567265, Length=170, Percent_Identity=31.7647058823529, Blast_Score=67, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17565586, Length=86, Percent_Identity=39.5348837209302, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI71983523, Length=147, Percent_Identity=31.9727891156463, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17569143, Length=175, Percent_Identity=29.1428571428571, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI71992290, Length=159, Percent_Identity=29.559748427673, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=106, Percent_Identity=36.7924528301887, Blast_Score=64, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI115535101, Length=171, Percent_Identity=30.4093567251462, Blast_Score=64, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6324985, Length=160, Percent_Identity=32.5, Blast_Score=69, Evalue=7e-13,
Organism=Saccharomyces cerevisiae, GI6323959, Length=159, Percent_Identity=29.559748427673, Blast_Score=66, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24666092, Length=110, Percent_Identity=39.0909090909091, Blast_Score=76, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24641565, Length=145, Percent_Identity=32.4137931034483, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI28574150, Length=174, Percent_Identity=27.5862068965517, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI116007328, Length=174, Percent_Identity=27.5862068965517, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI17136662, Length=155, Percent_Identity=32.9032258064516, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI281363262, Length=155, Percent_Identity=30.3225806451613, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24653245, Length=155, Percent_Identity=30.3225806451613, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24659289, Length=156, Percent_Identity=30.7692307692308, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24648314, Length=115, Percent_Identity=34.7826086956522, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI23397593, Length=177, Percent_Identity=31.638418079096, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI221512771, Length=162, Percent_Identity=29.6296296296296, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI85726357, Length=180, Percent_Identity=30, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR015856
- InterPro:   IPR003593
- InterPro:   IPR022112 [H]

Pfam domain/function: PF00005 ABC_tran; PF12370 CoABC_C [H]

EC number: NA

Molecular weight: Translated: 25434; Mature: 25434

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNVDGQIINANTKNKQLVSLRQHVGIVFQFPESQLFAETVVDDVKFGPLNFGVSDTEAT
CCCCCCEEEECCCCCHHHHHHHHHCCEEEECCCHHHHHHHHHHHCCCCCEECCCCCCHHH
NRAKDALQKVKLPEEFWQKSPFELSGGQMRRVAIAGVLATNPKILILDEPTAGLDPQGRF
HHHHHHHHHCCCCHHHHCCCCCCCCCCCEEEEEEEEEEECCCEEEEEECCCCCCCCCCHH
EMMELFNELHHKEQLTILLVTHQMDDVANYADNVIVMDGGQIVKNGAPVEVFRDTKWLIK
HHHHHHHHHHCCCCEEEEEEECCHHHHHHHHCCEEEEECCEEECCCCCEEEECCHHHHHH
HQLGLPKAANFASKLADRGVKFDKMPLDISDLVHQIVNVKDRRPSHE
HHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MVNVDGQIINANTKNKQLVSLRQHVGIVFQFPESQLFAETVVDDVKFGPLNFGVSDTEAT
CCCCCCEEEECCCCCHHHHHHHHHCCEEEECCCHHHHHHHHHHHCCCCCEECCCCCCHHH
NRAKDALQKVKLPEEFWQKSPFELSGGQMRRVAIAGVLATNPKILILDEPTAGLDPQGRF
HHHHHHHHHCCCCHHHHCCCCCCCCCCCEEEEEEEEEEECCCEEEEEECCCCCCCCCCHH
EMMELFNELHHKEQLTILLVTHQMDDVANYADNVIVMDGGQIVKNGAPVEVFRDTKWLIK
HHHHHHHHHHCCCCEEEEEEECCHHHHHHHHCCEEEEECCEEECCCCCEEEECCHHHHHH
HQLGLPKAANFASKLADRGVKFDKMPLDISDLVHQIVNVKDRRPSHE
HHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; L-glutamine [Periplasm]; H2O [C]

Specific reaction: ATP + L-glutamine [Periplasm] + H2O = ADP + phosphate + L-glutamine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12566566 [H]