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The map label for this gene is yrvN [H]

Identifier: 116493046

GI number: 116493046

Start: 1290680

End: 1291957

Strand: Direct

Name: yrvN [H]

Synonym: PEPE_1298

Alternate gene names: 116493046

Gene position: 1290680-1291957 (Clockwise)

Preceding gene: 116493045

Following gene: 116493047

Centisome position: 70.44

GC content: 41.31

Gene sequence:

>1278_bases
ATGCAACCATTAGCGTTTCGTATGCGCCCACGAACTATCGAAGAAATTGTTGGTCAACAGCATTTGGTCGGTCCTGGAAA
AATTATCGACCGCATGGTTAAAGCCAAACTTTTATCATCCATGATTTTATACGGCCCTCCTGGAACTGGTAAAACTAGTA
TTGCCAGTGCTATTTCAGGCTCAACTAAATATGCTTTTCGAATTTTGAACGCTGCCACCGATTCTAAAAAAGATCTTCAA
ATTGTGGCTGAAGAAGCCAAAATGAGTGGAACTGTAATTCTGCTACTAGATGAAATCCATCGTTTAGATAAAACTAAGCA
GGATTTCCTCCTCCCCCATTTAGAAAATGGCAATATCATTTTAATCGGTGCAACAACTGAAAATCCTTATATCAATATCA
ATCCGGCAATCCGTAGTAGAACTCAAATTTTTGAAGTTAAACCACTTCAACCGGATGAAATTAAAAAAGCCGTCCTTGCT
GCGATTAAGGATTCCTCCCGTGGCTTAGGTGAATTACCCATCGTAATTGATGAAGATGCTTTAAAATTTGTATCTGAGTC
CACTAATGGTGATTTGCGTAGCGCCTTAAATGCAGTTGAACTGGCTGCGCGTTCAACTGGTCCTGACGAAAATCAAAAAA
TTCACTTAACACTAGCTATTCTAGAAGAATGTCTGCAAAAAAGAGCTCTCACCCAAGATAAGGATGGGGATGCTCATTAC
GATGTAATTTCTGCCTTTCAAAAATCGATTCGCGGTAGTGATACAGATGCGGCTCTCCATTATATGGCACGACTTTTGGA
AAGTGGCGACTTGCAAAGTGTTATCCGTCGACTGTTAATCATTGCTTATGAAGATATCGGTTTGGCTAACCCCCCAGCTT
GTCAACGGACAGTTTCTGCCGTCACGGCCGCTGAACACGTCGGACTGCCTGAAGCTCGAATTCCTTTGGCTGACGCCGTG
ATTGAACTTTGTGTCTCTCCTAAATCCAATTCAGGCATTAGCGCAATCGATAATGCCTTAACCGATGTACGTACTGGAAA
GATTGGTGAAGTCCCAGACCATCTACGCGATTCTCATTACAAAGGTGCAGCTGCTTTAGGTCGTGGGGTAGATTACAAAT
ACCCTCACAATTATCCTAATGACTGGATAGCTCAGCAATATCTACCAGACAAATTGGTTGATGCTGCCTATTTTGATGCC
AAAGGTAATAGTACCTATGAAGAGAAAATTAAAAATCGGTACGAAAGTCTAAAGAAATCACAACGTTCTAATCATTAA

Upstream 100 bases:

>100_bases
CGATTCACTTATCGTTGAATACTACAACAAGCTATAATCATATTAAAAACGGCCTTGGCCGTTTTTTTATTTACTTTAAA
TTTTTATTTTAGGAGAAAAA

Downstream 100 bases:

>100_bases
CATTGTATTTTCTACAAAAAGTATAGTAAGATAATTATGAAGTTCTTAGGTATTCGGAATTATCGGTTTCATATTCTTCC
AACAAACATCTAATCGGGAG

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 425; Mature: 425

Protein sequence:

>425_residues
MQPLAFRMRPRTIEEIVGQQHLVGPGKIIDRMVKAKLLSSMILYGPPGTGKTSIASAISGSTKYAFRILNAATDSKKDLQ
IVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGNIILIGATTENPYININPAIRSRTQIFEVKPLQPDEIKKAVLA
AIKDSSRGLGELPIVIDEDALKFVSESTNGDLRSALNAVELAARSTGPDENQKIHLTLAILEECLQKRALTQDKDGDAHY
DVISAFQKSIRGSDTDAALHYMARLLESGDLQSVIRRLLIIAYEDIGLANPPACQRTVSAVTAAEHVGLPEARIPLADAV
IELCVSPKSNSGISAIDNALTDVRTGKIGEVPDHLRDSHYKGAAALGRGVDYKYPHNYPNDWIAQQYLPDKLVDAAYFDA
KGNSTYEEKIKNRYESLKKSQRSNH

Sequences:

>Translated_425_residues
MQPLAFRMRPRTIEEIVGQQHLVGPGKIIDRMVKAKLLSSMILYGPPGTGKTSIASAISGSTKYAFRILNAATDSKKDLQ
IVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGNIILIGATTENPYININPAIRSRTQIFEVKPLQPDEIKKAVLA
AIKDSSRGLGELPIVIDEDALKFVSESTNGDLRSALNAVELAARSTGPDENQKIHLTLAILEECLQKRALTQDKDGDAHY
DVISAFQKSIRGSDTDAALHYMARLLESGDLQSVIRRLLIIAYEDIGLANPPACQRTVSAVTAAEHVGLPEARIPLADAV
IELCVSPKSNSGISAIDNALTDVRTGKIGEVPDHLRDSHYKGAAALGRGVDYKYPHNYPNDWIAQQYLPDKLVDAAYFDA
KGNSTYEEKIKNRYESLKKSQRSNH
>Mature_425_residues
MQPLAFRMRPRTIEEIVGQQHLVGPGKIIDRMVKAKLLSSMILYGPPGTGKTSIASAISGSTKYAFRILNAATDSKKDLQ
IVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGNIILIGATTENPYININPAIRSRTQIFEVKPLQPDEIKKAVLA
AIKDSSRGLGELPIVIDEDALKFVSESTNGDLRSALNAVELAARSTGPDENQKIHLTLAILEECLQKRALTQDKDGDAHY
DVISAFQKSIRGSDTDAALHYMARLLESGDLQSVIRRLLIIAYEDIGLANPPACQRTVSAVTAAEHVGLPEARIPLADAV
IELCVSPKSNSGISAIDNALTDVRTGKIGEVPDHLRDSHYKGAAALGRGVDYKYPHNYPNDWIAQQYLPDKLVDAAYFDA
KGNSTYEEKIKNRYESLKKSQRSNH

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AAA ATPase family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=440, Percent_Identity=34.5454545454545, Blast_Score=235, Evalue=5e-62,
Organism=Homo sapiens, GI18426904, Length=440, Percent_Identity=30.9090909090909, Blast_Score=189, Evalue=6e-48,
Organism=Homo sapiens, GI4506491, Length=228, Percent_Identity=25, Blast_Score=66, Evalue=5e-11,
Organism=Homo sapiens, GI31881687, Length=228, Percent_Identity=25, Blast_Score=66, Evalue=5e-11,
Organism=Escherichia coli, GI1787119, Length=404, Percent_Identity=38.6138613861386, Blast_Score=283, Evalue=2e-77,
Organism=Saccharomyces cerevisiae, GI6324111, Length=426, Percent_Identity=33.8028169014084, Blast_Score=218, Evalue=1e-57,
Organism=Saccharomyces cerevisiae, GI6324039, Length=295, Percent_Identity=23.3898305084746, Blast_Score=67, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR008824
- InterPro:   IPR021886 [H]

Pfam domain/function: PF12002 MgsA_C; PF05496 RuvB_N [H]

EC number: NA

Molecular weight: Translated: 46637; Mature: 46637

Theoretical pI: Translated: 6.92; Mature: 6.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPLAFRMRPRTIEEIVGQQHLVGPGKIIDRMVKAKLLSSMILYGPPGTGKTSIASAISG
CCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHCC
STKYAFRILNAATDSKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGNII
CHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEHHHHHHCCCHHHHCCCEECCCCEE
LIGATTENPYININPAIRSRTQIFEVKPLQPDEIKKAVLAAIKDSSRGLGELPIVIDEDA
EEEECCCCCEEEECHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCEEECHHH
LKFVSESTNGDLRSALNAVELAARSTGPDENQKIHLTLAILEECLQKRALTQDKDGDAHY
HHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCHHH
DVISAFQKSIRGSDTDAALHYMARLLESGDLQSVIRRLLIIAYEDIGLANPPACQRTVSA
HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
VTAAEHVGLPEARIPLADAVIELCVSPKSNSGISAIDNALTDVRTGKIGEVPDHLRDSHY
HHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHCCC
KGAAALGRGVDYKYPHNYPNDWIAQQYLPDKLVDAAYFDAKGNSTYEEKIKNRYESLKKS
CCHHHHCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
QRSNH
HCCCC
>Mature Secondary Structure
MQPLAFRMRPRTIEEIVGQQHLVGPGKIIDRMVKAKLLSSMILYGPPGTGKTSIASAISG
CCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHCC
STKYAFRILNAATDSKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGNII
CHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEHHHHHHCCCHHHHCCCEECCCCEE
LIGATTENPYININPAIRSRTQIFEVKPLQPDEIKKAVLAAIKDSSRGLGELPIVIDEDA
EEEECCCCCEEEECHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCEEECHHH
LKFVSESTNGDLRSALNAVELAARSTGPDENQKIHLTLAILEECLQKRALTQDKDGDAHY
HHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCHHH
DVISAFQKSIRGSDTDAALHYMARLLESGDLQSVIRRLLIIAYEDIGLANPPACQRTVSA
HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
VTAAEHVGLPEARIPLADAVIELCVSPKSNSGISAIDNALTDVRTGKIGEVPDHLRDSHY
HHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHCCC
KGAAALGRGVDYKYPHNYPNDWIAQQYLPDKLVDAAYFDAKGNSTYEEKIKNRYESLKKS
CCHHHHCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
QRSNH
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]