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The map label for this gene is radC [C]

Identifier: 116493037

GI number: 116493037

Start: 1279353

End: 1280012

Strand: Reverse

Name: radC [C]

Synonym: PEPE_1289

Alternate gene names: 116493037

Gene position: 1280012-1279353 (Counterclockwise)

Preceding gene: 116493038

Following gene: 116493036

Centisome position: 69.85

GC content: 35.61

Gene sequence:

>660_bases
ATGGAAATTCAAGATGAAGCGAAAGCAAAATTAAAAAAAGTCGGTGCTGAAAATTTAAGTAACGAAGAACTTGTTCGAGC
TTTTTTGGATAGTTTTGGACAAAGTCAAAAAATTAACCAGCTAACTAATCATTTTTGGGATACAATTGGAGACATAGCTG
GTTACGGCTTACTAAGTCAAAATGAAAAAAGAAAAATTTTTAAAAATATTCCAGATGCTACTGTAGCTTTGGAGGCGGGT
ATTGAATTGGGACGTCGAATTCAAAAACAACCAATCCATTTACTGGGAAAGGTACTAGGAAGCGCTCAGTTGGGACAAAT
GATGGTTTCAAGATTTCAAAAGGAACCGCAAGAACACCTGTTGGTATTATGTTTGGATACTAAAAATCAAATTAAACGCG
AAATTGTTGTTTTTAAGGGTGGCCTTAACTCGGCAGAAGTTCATCCTCGAGAAATTATGGTGGAAGTATTGCGGGTTAGT
GCAAATAGTTTTGTTTTAATCCACAATCATCCAAGCGGTAATATAGAGCCTTCAACCAATGATTTAGCCTTCACCAAGAA
AATGAAAAAAGTCGGCGATTTAATGGGTATTCGCCTAATTGATCACTTAATTGTAGGAGATCAAAGTTACTGGAGTGCAG
CAGAAAAAAGATTTATTTAA

Upstream 100 bases:

>100_bases
TATTATTACCGGATCCTTGTATTTTATTTCTGAGGTACGCCCGCAGCTAATTAAATAAAGCCGGCTGAATTTCCGTATGT
ATTTATTAGAGGTGATGTAT

Downstream 100 bases:

>100_bases
TGATTGATAAACATTTAGGTTATTGCCTAGTTTATAATCTTTATATGTTATAATTTATGAAGTCATTTTAATGAGATAAG
TTAAGGGGTTCAGGGCTCAT

Product: DNA repair protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MEIQDEAKAKLKKVGAENLSNEELVRAFLDSFGQSQKINQLTNHFWDTIGDIAGYGLLSQNEKRKIFKNIPDATVALEAG
IELGRRIQKQPIHLLGKVLGSAQLGQMMVSRFQKEPQEHLLVLCLDTKNQIKREIVVFKGGLNSAEVHPREIMVEVLRVS
ANSFVLIHNHPSGNIEPSTNDLAFTKKMKKVGDLMGIRLIDHLIVGDQSYWSAAEKRFI

Sequences:

>Translated_219_residues
MEIQDEAKAKLKKVGAENLSNEELVRAFLDSFGQSQKINQLTNHFWDTIGDIAGYGLLSQNEKRKIFKNIPDATVALEAG
IELGRRIQKQPIHLLGKVLGSAQLGQMMVSRFQKEPQEHLLVLCLDTKNQIKREIVVFKGGLNSAEVHPREIMVEVLRVS
ANSFVLIHNHPSGNIEPSTNDLAFTKKMKKVGDLMGIRLIDHLIVGDQSYWSAAEKRFI
>Mature_219_residues
MEIQDEAKAKLKKVGAENLSNEELVRAFLDSFGQSQKINQLTNHFWDTIGDIAGYGLLSQNEKRKIFKNIPDATVALEAG
IELGRRIQKQPIHLLGKVLGSAQLGQMMVSRFQKEPQEHLLVLCLDTKNQIKREIVVFKGGLNSAEVHPREIMVEVLRVS
ANSFVLIHNHPSGNIEPSTNDLAFTKKMKKVGDLMGIRLIDHLIVGDQSYWSAAEKRFI

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=214, Percent_Identity=31.7757009345794, Blast_Score=107, Evalue=7e-25,
Organism=Escherichia coli, GI2367100, Length=99, Percent_Identity=42.4242424242424, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788997, Length=99, Percent_Identity=39.3939393939394, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1788312, Length=99, Percent_Identity=41.4141414141414, Blast_Score=79, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003583
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 24610; Mature: 24610

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIQDEAKAKLKKVGAENLSNEELVRAFLDSFGQSQKINQLTNHFWDTIGDIAGYGLLSQ
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCC
NEKRKIFKNIPDATVALEAGIELGRRIQKQPIHLLGKVLGSAQLGQMMVSRFQKEPQEHL
CHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCHHHCE
LVLCLDTKNQIKREIVVFKGGLNSAEVHPREIMVEVLRVSANSFVLIHNHPSGNIEPSTN
EEEEECCHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC
DLAFTKKMKKVGDLMGIRLIDHLIVGDQSYWSAAEKRFI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC
>Mature Secondary Structure
MEIQDEAKAKLKKVGAENLSNEELVRAFLDSFGQSQKINQLTNHFWDTIGDIAGYGLLSQ
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCC
NEKRKIFKNIPDATVALEAGIELGRRIQKQPIHLLGKVLGSAQLGQMMVSRFQKEPQEHL
CHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCHHHCE
LVLCLDTKNQIKREIVVFKGGLNSAEVHPREIMVEVLRVSANSFVLIHNHPSGNIEPSTN
EEEEECCHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC
DLAFTKKMKKVGDLMGIRLIDHLIVGDQSYWSAAEKRFI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA