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The map label for this gene is yjbM [H]

Identifier: 116492964

GI number: 116492964

Start: 1203664

End: 1204278

Strand: Reverse

Name: yjbM [H]

Synonym: PEPE_1203

Alternate gene names: 116492964

Gene position: 1204278-1203664 (Counterclockwise)

Preceding gene: 116492966

Following gene: 116492963

Centisome position: 65.72

GC content: 35.45

Gene sequence:

>615_bases
ATGATTAAAGATTGGGATACCTTTTTATTACCATATTCCCAGGCTGTTTCTGAATTAAAGGTTAAGCTTAGGGGTATGAG
AACTCAGTTTCTAAAAAATGGAGAAGAAAGTCCAATTGAGTTTGTGACTGGACGAGTAAAACCAGTTGAAAGTATAAAAG
AAAAGATGGTTCGTCGCCAAGTCCTAGAAGAACGCATAGAACAAGACATGCAGGATATAGCTGGCGTCCGTGTTATGTGT
CAATTCGTAGAAGATATCTATGAAGTTGTCGATTTAATTCGGAAGCGTACTGATATGACGGTAATTGAAGAGCGAGACTA
TGTCGAAAATGAAAAACCTAGTGGTTACCGTTCTTATCATATTGTGGTGGAATATCCGGTTCAAATGATGAATGGTCAAA
AGAAAATTTTAGCAGAAATTCAAGTACGTACACTTGAAATGAATTTTTGGGCTACAATCGAGCACTCTTTAAATTATAAA
TTTGACGGAGAATTTCCAAAAGAACTAAGAACACGGTTGCAGAAGGCCTCGGTTAAATCATATGAATTAGACAAAGAAAT
GTCTGAAATCAGAAAACAAATTTTATTAGCACAAAAAGAACAAAAGGATGTCTAA

Upstream 100 bases:

>100_bases
ATTATTTTGTTTTAAAAAATCTGAAAACAATGTTTAAAAAGAAGTTTTAGTTTCTATGATAGAATAGAAGAGGTTGTTAA
TTTGGTTCGGAGGGATACGC

Downstream 100 bases:

>100_bases
ATATGAGAGTAGCTATTTATCATTCAAGTGATGAGCATTCCATTCAAGTTGGTAAAGATTTAGCAAAGATTTTATCTCAA
AATGAGATTGTAATTGATAA

Product: RelA_SpoT domain-containing protein

Products: NA

Alternate protein names: (p)ppGpp synthase yjbM; Small alarmone synthase 1; SAS 1 [H]

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MIKDWDTFLLPYSQAVSELKVKLRGMRTQFLKNGEESPIEFVTGRVKPVESIKEKMVRRQVLEERIEQDMQDIAGVRVMC
QFVEDIYEVVDLIRKRTDMTVIEERDYVENEKPSGYRSYHIVVEYPVQMMNGQKKILAEIQVRTLEMNFWATIEHSLNYK
FDGEFPKELRTRLQKASVKSYELDKEMSEIRKQILLAQKEQKDV

Sequences:

>Translated_204_residues
MIKDWDTFLLPYSQAVSELKVKLRGMRTQFLKNGEESPIEFVTGRVKPVESIKEKMVRRQVLEERIEQDMQDIAGVRVMC
QFVEDIYEVVDLIRKRTDMTVIEERDYVENEKPSGYRSYHIVVEYPVQMMNGQKKILAEIQVRTLEMNFWATIEHSLNYK
FDGEFPKELRTRLQKASVKSYELDKEMSEIRKQILLAQKEQKDV
>Mature_204_residues
MIKDWDTFLLPYSQAVSELKVKLRGMRTQFLKNGEESPIEFVTGRVKPVESIKEKMVRRQVLEERIEQDMQDIAGVRVMC
QFVEDIYEVVDLIRKRTDMTVIEERDYVENEKPSGYRSYHIVVEYPVQMMNGQKKILAEIQVRTLEMNFWATIEHSLNYK
FDGEFPKELRTRLQKASVKSYELDKEMSEIRKQILLAQKEQKDV

Specific function: Functions as a (p)ppGpp synthase. In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. YjbM has probably a

COG id: COG2357

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the relA/spoT family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007685 [H]

Pfam domain/function: PF04607 RelA_SpoT [H]

EC number: =2.7.6.5 [H]

Molecular weight: Translated: 24276; Mature: 24276

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKDWDTFLLPYSQAVSELKVKLRGMRTQFLKNGEESPIEFVTGRVKPVESIKEKMVRRQ
CCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHH
VLEERIEQDMQDIAGVRVMCQFVEDIYEVVDLIRKRTDMTVIEERDYVENEKPSGYRSYH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHCCCCCCCCCEEE
IVVEYPVQMMNGQKKILAEIQVRTLEMNFWATIEHSLNYKFDGEFPKELRTRLQKASVKS
EEEECCHHHHCCHHHHHHHHHHHHEEEHHEEEEECCCCCEECCCCCHHHHHHHHHHHHHH
YELDKEMSEIRKQILLAQKEQKDV
HHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIKDWDTFLLPYSQAVSELKVKLRGMRTQFLKNGEESPIEFVTGRVKPVESIKEKMVRRQ
CCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHH
VLEERIEQDMQDIAGVRVMCQFVEDIYEVVDLIRKRTDMTVIEERDYVENEKPSGYRSYH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHCCCCCCCCCEEE
IVVEYPVQMMNGQKKILAEIQVRTLEMNFWATIEHSLNYKFDGEFPKELRTRLQKASVKS
EEEECCHHHHCCHHHHHHHHHHHHEEEHHEEEEECCCCCEECCCCCHHHHHHHHHHHHHH
YELDKEMSEIRKQILLAQKEQKDV
HHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]