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The map label for this gene is yubA [H]

Identifier: 116492957

GI number: 116492957

Start: 1197254

End: 1198396

Strand: Reverse

Name: yubA [H]

Synonym: PEPE_1196

Alternate gene names: 116492957

Gene position: 1198396-1197254 (Counterclockwise)

Preceding gene: 116492958

Following gene: 116492956

Centisome position: 65.4

GC content: 35.26

Gene sequence:

>1143_bases
GTGGACAATAAACCAAGAAATAAGTATTGGAGAAGCTGGTTTAATAAGCTTGTATTAGATAATAGGCCAGTGGTAAGTTT
AATCATCATTTTATTATTTTTGATGATTTTATACATGATTTCAAAAGTCACATGGATTTTTAGTCCACTAAAGGAATTTT
TCGGAATTGTGGGTTTTCCTATTATTTTAGCGGGGGTCTTATATTATCTGATTAATCCACTAGTTGATAAATTAGAACAG
CGATTCAAATTGAAACGAGTTTTATCAATTACGATCATCTTTGTCTTAATCACGATTTTAATTATTGCAGGAATTGTGTC
TGTCATTCCGGTTATTCGGGAGCAATCCGCGGCATTGATTAAAAATTGGCCGGACTACTGGAATTCAGGAGTTGAGAAGG
TCGAAGGATTCTTAAAAGATCCGCGCCTAGGAGATTTAAAAAAACAAATTGATGGTATTGGTAGTAATACTGTTCAATCA
TGGAGTAAGAAGGCAACCGAATTTGTGGATAACACGGTCACATCGTTAGGTAGTGTGATTGGTTTGATTACCAAAATAGT
TATTGGCATTATTACAATGCCGTTTATTCTTTTCTATTTATTAAAGGATGGACATCGGTTACCTCATTTTATCGCACAAG
TTTTTCCTGTTAAACGCCGGGATGGATTCATTCAAATTTTAACAGAAATCAATACACAGTTAAGTCAGTACATCCGAGGA
CAATTGATTGTGGCATTTTTTGTGGCAGTAATTTTCTTTATTGGGTATTCAATTATTGGTCTTAAATTTGCCCTAACCTT
AGGAGTAGCTGCAGGTTTTCTCAATTTAATTCCATATTTAGGATCATTCTTAGCGATGGTACCCTCAATTGTAATTGGGG
CTTTTGTTTCTCCCATCATGCTGGTCAAGGTTTTGATAGTCTTCGTAATTGAACAAACAATTGAAGGCCGTTTTGTTTCA
CCGCTTGTTTTAGGTAGTAATTTGGATATTCATCCGGTTACTATTTTGGTTGTATTGCTAGCCTCTGGACAGATTTTTGG
TTTGGTTGGCGTGATATTTGGGATTCCAGCTTACGCGGTTCTAAAAGTTCTATTCATTCATGGATTTAGAGCATTTAAGA
AAAATATCGGTGGATATGACTGA

Upstream 100 bases:

>100_bases
CCTGAAAAACCGTTGGAAAGTGCAATCTATTTAACACCTAACCAATTTCCAGAATTTAAAGTTGGAGAAGAGATTATGTA
TATGTAGGCGGTGAACAACA

Downstream 100 bases:

>100_bases
ATTAAAGCGGAGTTTGCGGAAACCAAAAAGTAATGTTAATATGCAGTTGAAATCGTTTGATCGCAATATCGACTATGTTC
GTTTGAAACGGGCAGATTGA

Product: permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 380; Mature: 380

Protein sequence:

>380_residues
MDNKPRNKYWRSWFNKLVLDNRPVVSLIIILLFLMILYMISKVTWIFSPLKEFFGIVGFPIILAGVLYYLINPLVDKLEQ
RFKLKRVLSITIIFVLITILIIAGIVSVIPVIREQSAALIKNWPDYWNSGVEKVEGFLKDPRLGDLKKQIDGIGSNTVQS
WSKKATEFVDNTVTSLGSVIGLITKIVIGIITMPFILFYLLKDGHRLPHFIAQVFPVKRRDGFIQILTEINTQLSQYIRG
QLIVAFFVAVIFFIGYSIIGLKFALTLGVAAGFLNLIPYLGSFLAMVPSIVIGAFVSPIMLVKVLIVFVIEQTIEGRFVS
PLVLGSNLDIHPVTILVVLLASGQIFGLVGVIFGIPAYAVLKVLFIHGFRAFKKNIGGYD

Sequences:

>Translated_380_residues
MDNKPRNKYWRSWFNKLVLDNRPVVSLIIILLFLMILYMISKVTWIFSPLKEFFGIVGFPIILAGVLYYLINPLVDKLEQ
RFKLKRVLSITIIFVLITILIIAGIVSVIPVIREQSAALIKNWPDYWNSGVEKVEGFLKDPRLGDLKKQIDGIGSNTVQS
WSKKATEFVDNTVTSLGSVIGLITKIVIGIITMPFILFYLLKDGHRLPHFIAQVFPVKRRDGFIQILTEINTQLSQYIRG
QLIVAFFVAVIFFIGYSIIGLKFALTLGVAAGFLNLIPYLGSFLAMVPSIVIGAFVSPIMLVKVLIVFVIEQTIEGRFVS
PLVLGSNLDIHPVTILVVLLASGQIFGLVGVIFGIPAYAVLKVLFIHGFRAFKKNIGGYD
>Mature_380_residues
MDNKPRNKYWRSWFNKLVLDNRPVVSLIIILLFLMILYMISKVTWIFSPLKEFFGIVGFPIILAGVLYYLINPLVDKLEQ
RFKLKRVLSITIIFVLITILIIAGIVSVIPVIREQSAALIKNWPDYWNSGVEKVEGFLKDPRLGDLKKQIDGIGSNTVQS
WSKKATEFVDNTVTSLGSVIGLITKIVIGIITMPFILFYLLKDGHRLPHFIAQVFPVKRRDGFIQILTEINTQLSQYIRG
QLIVAFFVAVIFFIGYSIIGLKFALTLGVAAGFLNLIPYLGSFLAMVPSIVIGAFVSPIMLVKVLIVFVIEQTIEGRFVS
PLVLGSNLDIHPVTILVVLLASGQIFGLVGVIFGIPAYAVLKVLFIHGFRAFKKNIGGYD

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1788838, Length=330, Percent_Identity=27.8787878787879, Blast_Score=114, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 42518; Mature: 42518

Theoretical pI: Translated: 10.40; Mature: 10.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MDNKPRNKYWRSWFNKLVLDNRPVVSLIIILLFLMILYMISKVTWIFSPLKEFFGIVGFP
CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IILAGVLYYLINPLVDKLEQRFKLKRVLSITIIFVLITILIIAGIVSVIPVIREQSAALI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KNWPDYWNSGVEKVEGFLKDPRLGDLKKQIDGIGSNTVQSWSKKATEFVDNTVTSLGSVI
HCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
GLITKIVIGIITMPFILFYLLKDGHRLPHFIAQVFPVKRRDGFIQILTEINTQLSQYIRG
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHH
QLIVAFFVAVIFFIGYSIIGLKFALTLGVAAGFLNLIPYLGSFLAMVPSIVIGAFVSPIM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVKVLIVFVIEQTIEGRFVSPLVLGSNLDIHPVTILVVLLASGQIFGLVGVIFGIPAYAV
HHHHHHHHHHHHHHCCCCCCHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHH
LKVLFIHGFRAFKKNIGGYD
HHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]