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The map label for this gene is ydhO [C]

Identifier: 116492924

GI number: 116492924

Start: 1161050

End: 1162540

Strand: Reverse

Name: ydhO [C]

Synonym: PEPE_1163

Alternate gene names: 116492924

Gene position: 1162540-1161050 (Counterclockwise)

Preceding gene: 116492925

Following gene: 116492921

Centisome position: 63.44

GC content: 41.18

Gene sequence:

>1491_bases
ATGGTTACCAATTCTAAATCAAATGCATCCAAATTATTATTAGCTGGTGCGGCCGGAGCAGGTCTTCTTGTTGCAGGCGG
AACACAAGTGATTGCTCATGCTGATTCTGTAAAGGTACAAAAGAGTGATACAGTTTGGGCACTTTCACAAAAATACGGAG
TTTCCGTTAAAAGCATTGAATCACTAAATAACATTAATCAAAATAGTCACTTGATTTTTGTTGGACAAGATATCAATATT
CCAGGCAAAACAGACTCAAAAGTTACTAAAATTACCGTAAAGAGCGGTGATAGTTTATCAGTTCTTGCTGAAAAATATGG
TGTATCTGTTAATGCCATCATGAAAGCAAACAATCTTAGCAGTTCATTAATTATTGTTGGACAAAGTTTAACAATTCCTG
CTGCCAATGGTTCAGCAAGTCAAGCTTCAAGTACATATGTACCTCAAGCTACTCAACAAGTTACAGTTCAAGCAAGTAGT
GCAGCTGCTCAAACTGTAGTAACACCAGCACCAAGTAGTGCTGCTACAACATATGTAGCACCTGCAAGCAGTGCAGTAAC
ATCACAAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAG
TAACATCACAAGCTGCAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGC
GCAGTGACATCACAAGCTGCAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAG
TAGTGCAGTAACATCACAAGCTGCAACTAGCGTAGCATCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCAT
CAAGTAGCGCAGTGACATCACAAGCTGCAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCA
CCATCAAGTAGTGCGGTAACATCACAAGCTGTAACTAGTGTAGCACCATCAAGCGCTGCTACAACTCCTTCATATGCTAC
ACATACTAGTTCAGCTGCAACAACTACTAACACAACCAATGTTGCTAGTTCAGCTGCATCATCAAGTGCTACAACAACAA
CTACTCAAAATACTGGTTCTGTTACTGGTTTAGCTAGATCTTTAGCTAATAACACAATCCCATACGTATGGGGCGGTAAA
ACAACTTCAGGTTTTGATTGTTCTGGATTTGTTTCATATGTATACCAACATTCAGCTGGTATTAGTCTTCCAAGCTATAC
TGTAGCTATGGAATCATATGTAACAAAGAAATCTGTTTCAGCTGCTCAACCAGGTGATTTATTATTCTGGGGTAGCGCTG
GTTCAACATATCACGTCGCTATTTATCTTGGTAACAACCAATATGCAAATGCTCCAACATTTGGTCAAAATGCTAAGGTT
TCAACAATTTCATCATACTTCTACCCAAGTTTTGCTGGTAGCGTACGTTAA

Upstream 100 bases:

>100_bases
AGTATTAAACATGTGCAAAAAACCAATTCTAATTTATTTTGAATATTAACGATAGAAATCATAAAAATTATACGAAAATT
TAAGGAGTGGACGAACTTAT

Downstream 100 bases:

>100_bases
AATTAACTAAGAAAAAAACGTTTCAATTAACCTAGGTTAGTTGAGACGTTTTTTATTTTACCTTTTAAAATTTGGGAAAG
GGAACTTTTCATGTTTAGCA

Product: cell wall hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 496; Mature: 496

Protein sequence:

>496_residues
MVTNSKSNASKLLLAGAAGAGLLVAGGTQVIAHADSVKVQKSDTVWALSQKYGVSVKSIESLNNINQNSHLIFVGQDINI
PGKTDSKVTKITVKSGDSLSVLAEKYGVSVNAIMKANNLSSSLIIVGQSLTIPAANGSASQASSTYVPQATQQVTVQASS
AAAQTVVTPAPSSAATTYVAPASSAVTSQAVTSVAPSSAVSSAASSVAPSSSAVTSQAATSVAPSSAVSSAASSVAPSSS
AVTSQAATSVAPSSAVSSAASSVAPSSSAVTSQAATSVASSSAVSSAASSVAPSSSAVTSQAATSVAPSSAVSSAASSVA
PSSSAVTSQAVTSVAPSSAATTPSYATHTSSAATTTNTTNVASSAASSSATTTTTQNTGSVTGLARSLANNTIPYVWGGK
TTSGFDCSGFVSYVYQHSAGISLPSYTVAMESYVTKKSVSAAQPGDLLFWGSAGSTYHVAIYLGNNQYANAPTFGQNAKV
STISSYFYPSFAGSVR

Sequences:

>Translated_496_residues
MVTNSKSNASKLLLAGAAGAGLLVAGGTQVIAHADSVKVQKSDTVWALSQKYGVSVKSIESLNNINQNSHLIFVGQDINI
PGKTDSKVTKITVKSGDSLSVLAEKYGVSVNAIMKANNLSSSLIIVGQSLTIPAANGSASQASSTYVPQATQQVTVQASS
AAAQTVVTPAPSSAATTYVAPASSAVTSQAVTSVAPSSAVSSAASSVAPSSSAVTSQAATSVAPSSAVSSAASSVAPSSS
AVTSQAATSVAPSSAVSSAASSVAPSSSAVTSQAATSVASSSAVSSAASSVAPSSSAVTSQAATSVAPSSAVSSAASSVA
PSSSAVTSQAVTSVAPSSAATTPSYATHTSSAATTTNTTNVASSAASSSATTTTTQNTGSVTGLARSLANNTIPYVWGGK
TTSGFDCSGFVSYVYQHSAGISLPSYTVAMESYVTKKSVSAAQPGDLLFWGSAGSTYHVAIYLGNNQYANAPTFGQNAKV
STISSYFYPSFAGSVR
>Mature_496_residues
MVTNSKSNASKLLLAGAAGAGLLVAGGTQVIAHADSVKVQKSDTVWALSQKYGVSVKSIESLNNINQNSHLIFVGQDINI
PGKTDSKVTKITVKSGDSLSVLAEKYGVSVNAIMKANNLSSSLIIVGQSLTIPAANGSASQASSTYVPQATQQVTVQASS
AAAQTVVTPAPSSAATTYVAPASSAVTSQAVTSVAPSSAVSSAASSVAPSSSAVTSQAATSVAPSSAVSSAASSVAPSSS
AVTSQAATSVAPSSAVSSAASSVAPSSSAVTSQAATSVASSSAVSSAASSVAPSSSAVTSQAATSVAPSSAVSSAASSVA
PSSSAVTSQAVTSVAPSSAATTPSYATHTSSAATTTNTTNVASSAASSSATTTTTQNTGSVTGLARSLANNTIPYVWGGK
TTSGFDCSGFVSYVYQHSAGISLPSYTVAMESYVTKKSVSAAQPGDLLFWGSAGSTYHVAIYLGNNQYANAPTFGQNAKV
STISSYFYPSFAGSVR

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Secreted, cell wall [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase C40 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=111, Percent_Identity=33.3333333333333, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788501, Length=82, Percent_Identity=41.4634146341463, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 48379; Mature: 48379

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTNSKSNASKLLLAGAAGAGLLVAGGTQVIAHADSVKVQKSDTVWALSQKYGVSVKSIE
CCCCCCCCCCEEEEEECCCCCEEEECCCEEEEECCCEEEECCCCEEEEHHHHCCCHHHHH
SLNNINQNSHLIFVGQDINIPGKTDSKVTKITVKSGDSLSVLAEKYGVSVNAIMKANNLS
HHHCCCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCHHHHHHHHCCEEEEEEEECCCC
SSLIIVGQSLTIPAANGSASQASSTYVPQATQQVTVQASSAAAQTVVTPAPSSAATTYVA
CEEEEEECEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEECCCCCCCCEEEEC
PASSAVTSQAVTSVAPSSAVSSAASSVAPSSSAVTSQAATSVAPSSAVSSAASSVAPSSS
CCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCH
AVTSQAATSVAPSSAVSSAASSVAPSSSAVTSQAATSVASSSAVSSAASSVAPSSSAVTS
HHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
QAATSVAPSSAVSSAASSVAPSSSAVTSQAVTSVAPSSAATTPSYATHTSSAATTTNTTN
HHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCH
VASSAASSSATTTTTQNTGSVTGLARSLANNTIPYVWGGKTTSGFDCSGFVSYVYQHSAG
HHHHHCCCCCCEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHCCC
ISLPSYTVAMESYVTKKSVSAAQPGDLLFWGSAGSTYHVAIYLGNNQYANAPTFGQNAKV
CCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCE
STISSYFYPSFAGSVR
EHHHHHHCCCCCCCCC
>Mature Secondary Structure
MVTNSKSNASKLLLAGAAGAGLLVAGGTQVIAHADSVKVQKSDTVWALSQKYGVSVKSIE
CCCCCCCCCCEEEEEECCCCCEEEECCCEEEEECCCEEEECCCCEEEEHHHHCCCHHHHH
SLNNINQNSHLIFVGQDINIPGKTDSKVTKITVKSGDSLSVLAEKYGVSVNAIMKANNLS
HHHCCCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCHHHHHHHHCCEEEEEEEECCCC
SSLIIVGQSLTIPAANGSASQASSTYVPQATQQVTVQASSAAAQTVVTPAPSSAATTYVA
CEEEEEECEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEECCCCCCCCEEEEC
PASSAVTSQAVTSVAPSSAVSSAASSVAPSSSAVTSQAATSVAPSSAVSSAASSVAPSSS
CCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCH
AVTSQAATSVAPSSAVSSAASSVAPSSSAVTSQAATSVASSSAVSSAASSVAPSSSAVTS
HHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
QAATSVAPSSAVSSAASSVAPSSSAVTSQAVTSVAPSSAATTPSYATHTSSAATTTNTTN
HHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCH
VASSAASSSATTTTTQNTGSVTGLARSLANNTIPYVWGGKTTSGFDCSGFVSYVYQHSAG
HHHHHCCCCCCEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHCCC
ISLPSYTVAMESYVTKKSVSAAQPGDLLFWGSAGSTYHVAIYLGNNQYANAPTFGQNAKV
CCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCE
STISSYFYPSFAGSVR
EHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2780297 [H]