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The map label for this gene is dnaD [H]

Identifier: 116492695

GI number: 116492695

Start: 931798

End: 932502

Strand: Direct

Name: dnaD [H]

Synonym: PEPE_0930

Alternate gene names: 116492695

Gene position: 931798-932502 (Clockwise)

Preceding gene: 116492694

Following gene: 116492698

Centisome position: 50.85

GC content: 34.33

Gene sequence:

>705_bases
ATGCAAGATTTACTTCTTAGTTTTTTAGAGGACGGGAGTATCAGCATTGCTAACTTTTTATTAGATAACTATGCAAAACT
CGGCATGACAAATGACGAGTTTTTGCTTTATCTACAGATTAAAAAGGAGCAATCACGGGGAAATTCGTTTCCTCAGATGG
ATAAACTTGCTGATAGCCTCGGAATGACTAGTCAAAACCTCTTTTCGACCATCCAAGCATTACAAGACAAAAAGATTCTA
GAAATTAAACAGCGAAAAGACGACCAAGGGCGGTTAACCGATTTTTATGATTTTAGCCTGCTTTATCAAAAAATGATTGC
GTTATTTGATAATAAAGTAGAAGAAACTGAAAAGGTGGCAACCGCTAAGCAGGAAAATAATATCTATGATCAAATTCAGA
TTGAGTTTGGTCGACCTTTATCGCCAATTGAAATTGAAACCATTTCGCAATGGATTGATACCGACCATTTTTCTTATGAT
TTAATACGTTTAGCTCTTAAGGAAGCTGTATTAAATCAAGCATATAATTTAAAATATATGGATCGAATTTTGTTAAATTG
GCAACAACGTCACTTAACCACTCCAGCTCAGGTTGAAAATAGTTTGAACTCTCGAACTACTAGTCAGGATACGAGTTCAT
CGAATAAAGATAATCAAAAGAAGCATATCCAAATTCCACTGGTTAAATTAACTAAAGACAACTAA

Upstream 100 bases:

>100_bases
TTCTTATATCAACCAAAAAGATAGATTAGTTACTAAAACGATTAACTTTAAAACGGGTGAAGAACTCAAAACCATTACAA
CATACTAATAGGAGGAACAA

Downstream 100 bases:

>100_bases
AAAAGATCATCTCATTGATTGAGATGATCTTTTTTAGTTATTCAGAATCACTAGCAGAGCTAGTAGAAGTTGTTGAAGCA
GAAGTGGTAGTAGAAGTGCT

Product: DNA replication protein DnaD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MQDLLLSFLEDGSISIANFLLDNYAKLGMTNDEFLLYLQIKKEQSRGNSFPQMDKLADSLGMTSQNLFSTIQALQDKKIL
EIKQRKDDQGRLTDFYDFSLLYQKMIALFDNKVEETEKVATAKQENNIYDQIQIEFGRPLSPIEIETISQWIDTDHFSYD
LIRLALKEAVLNQAYNLKYMDRILLNWQQRHLTTPAQVENSLNSRTTSQDTSSSNKDNQKKHIQIPLVKLTKDN

Sequences:

>Translated_234_residues
MQDLLLSFLEDGSISIANFLLDNYAKLGMTNDEFLLYLQIKKEQSRGNSFPQMDKLADSLGMTSQNLFSTIQALQDKKIL
EIKQRKDDQGRLTDFYDFSLLYQKMIALFDNKVEETEKVATAKQENNIYDQIQIEFGRPLSPIEIETISQWIDTDHFSYD
LIRLALKEAVLNQAYNLKYMDRILLNWQQRHLTTPAQVENSLNSRTTSQDTSSSNKDNQKKHIQIPLVKLTKDN
>Mature_234_residues
MQDLLLSFLEDGSISIANFLLDNYAKLGMTNDEFLLYLQIKKEQSRGNSFPQMDKLADSLGMTSQNLFSTIQALQDKKIL
EIKQRKDDQGRLTDFYDFSLLYQKMIALFDNKVEETEKVATAKQENNIYDQIQIEFGRPLSPIEIETISQWIDTDHFSYD
LIRLALKEAVLNQAYNLKYMDRILLNWQQRHLTTPAQVENSLNSRTTSQDTSSSNKDNQKKHIQIPLVKLTKDN

Specific function: Probable component of primosome involved in the initiation of DNA replication [H]

COG id: COG3935

COG function: function code L; Putative primosome component and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006343 [H]

Pfam domain/function: PF07261 DnaB_2 [H]

EC number: NA

Molecular weight: Translated: 27181; Mature: 27181

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDLLLSFLEDGSISIANFLLDNYAKLGMTNDEFLLYLQIKKEQSRGNSFPQMDKLADSL
CHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCHHCCCCCCHHHHHHHHH
GMTSQNLFSTIQALQDKKILEIKQRKDDQGRLTDFYDFSLLYQKMIALFDNKVEETEKVA
CCCHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHH
TAKQENNIYDQIQIEFGRPLSPIEIETISQWIDTDHFSYDLIRLALKEAVLNQAYNLKYM
HHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHH
DRILLNWQQRHLTTPAQVENSLNSRTTSQDTSSSNKDNQKKHIQIPLVKLTKDN
HHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEEECCC
>Mature Secondary Structure
MQDLLLSFLEDGSISIANFLLDNYAKLGMTNDEFLLYLQIKKEQSRGNSFPQMDKLADSL
CHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCHHCCCCCCHHHHHHHHH
GMTSQNLFSTIQALQDKKILEIKQRKDDQGRLTDFYDFSLLYQKMIALFDNKVEETEKVA
CCCHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHH
TAKQENNIYDQIQIEFGRPLSPIEIETISQWIDTDHFSYDLIRLALKEAVLNQAYNLKYM
HHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHH
DRILLNWQQRHLTTPAQVENSLNSRTTSQDTSSSNKDNQKKHIQIPLVKLTKDN
HHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7704260; 8760912; 9384377 [H]