| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is dinG [H]
Identifier: 116492693
GI number: 116492693
Start: 928444
End: 931233
Strand: Direct
Name: dinG [H]
Synonym: PEPE_0928
Alternate gene names: 116492693
Gene position: 928444-931233 (Clockwise)
Preceding gene: 116492688
Following gene: 116492694
Centisome position: 50.67
GC content: 37.2
Gene sequence:
>2790_bases ATGAATAAAACAAAGTATGCCGTCGTTGATTTAGAAATGACAGGTAGTGATTTCGATGGTGACAATCGAATCATCCAAAT CGGATGCGCTTTTGTTGAAAATGGAAAAATTGTGGATACCTTTCAAAGTAAGGTTAATCCGCAAAGACCGATTCCAGCGG GAATTACTAAACTGACAGGAATCACCGATGAGCAGGTGCAAAATGCCCCTAAATTTAATGATATTGTAGATGAAGTATAT CGAAAATTAGTCGATACTGTTTTTGTAGCTCATAATGTAGAATTCGATTTTCCCTTCTTGAATCAAGAATTGGTTCGTAG TGGATATCCGGAACTTAACATTCCAGCTGTCGATACGGTTTCCCTCAGTCAAATTGTCTTTTCATTTACCAAGGGTTACC GATTACGTGATTTAACTAGCTATTTAAAAATTGAACATGATGATCCACATTCTGCTGATAGTGACGCCATTGCTACAGCT AATTTGTTAATTGCGATCAAAAAAAATCTCCAACAACTTCCCATTGTAACGTTAGAACGTTTAGTGGAGTTAGGAAAAGA CTTACCACGCCAAACGCTATCGATTTTAAAGGACGCTCTACATGAGAACAAACAAAATCCGCAAAAAATTGATGTTGATT TAATGGTGGTCGATGGCGTTGCTTTAAAAAAGCCGATTGCTTTACAAACTGAACACCAAGCAGACGAGAAATTGGTTTAT CCTCGGGGAAAACGAGAAAAGGAACAGTTATACAATGGAACCTTAAGCTGGCGTAAATTACAGGGTTCAATTATGAATTT CACCCATCAACAGTTTTCAGTTACGGAAGGCTTCAAAAAGCATGTGGTTATTGAAGCTCCTACCGGATCTGGGAAAACCT TGGGTTATTTATTCCCATTGAGTTATATTGCACGTGAACAACAGCGTAAAGTAGTTGTTAGTGTACCTACAACCATTTTA CAAAACCAAGTTCTAGCAGTAGGACGTCAGCAGTTGAATGCTATTTTAGAAACGCCGATGCAGTTTGCAATTCTGAAAGG GAGTAGTAATTATCTTAATTTAGAAGCCTTCATGAAAAGTATTACCCATCAAACGTTAAGCAAAGATTCTCGCTTGGTGG CCATGAAGATTCTGGTATGGCTTACTAAGACGGATACTGGTGATTTTGATGAAATTAACCACCATATTAACTTTTCTAAC TTCGTCGATGGCATAAGACATCATGGAAAAACCGTGCTTAACCCGAAATCTAAGTTCTTTGAGTATGACTTTTACCGTAG AGCGATGAAGAAGTTGAAGTATGCAGACTTTATTATTACCAATCATCGTTATTTAGCATTACACGCCGATGAAATTGGAG AATCTGATCAACAACCATTACTAGTGATTGACGAAGCCCAGCATTTTCCAACGATTGTTTCCAATATGAATCAAAAATTT CTAGACTTAAACGAGTTGATGATGGAAACCCATCGGTTAGTTAGTCGTTTAGTAATGAACCATAAGCGCAATTTAATTCA AGCGACTAAACATCAACCCTTAGCTGGATTTCATATTCGGCGCTTTGTTAACAGTCTCGAGCATATTAATACTCAAATTA CGGAGATTCAACAAAAGCTATTTGATAAATTTGTGGCTCCTCGTAAGAAAAATTTATATGAAAATCAACCAGCCGAGATT GTCATTAAAAATAATGTTATTAACCAAATGGCTAAGCACGAATTTCATCAAGTGGTTCAGGAATTGGCCAATACATTTAT TGAGTTTGATGCGTTAGATCGCTTTTTTAAAGACCAAGAACTTACTCCGGAAATTAGGGATGATTGGGCTCAAATCAAAG CTTTTCAAAGTAATTTAACGAAATTCTACGATGCTATTCGAGAAATTACCGATCATCTCAATCAAAATATTTACTGGATC ACGCTAGGTCCAAATCATGATCCGGGAAGTATTCGGATTGGTAAAGAAATTTTAGATACGGGAGAATTCTACCGGCAAAA AATCGAACCATTTTATCATAAGGTTCTTTTAATTGGTGGAACGCTATTCTTTGAACATAAGCGTAGTTACTTCTTAGACC AATTTGGCTTGCATAAACCCGAGACATCGATACGGACTTTCAGACGCGGCGTGGACTTCGAAAACCAGTTAGATTTTGAA GTACTACAAAGCGACTTTACGATTGATTATGAAAGCAACCAGGATCAATATGCTGACTTTTTGGCAGAGGCAATTGAAGC GTTGACGAGGGATGTTAATCGTCAAACGCTAGTTCTCTTTAATTCTTTAGAAACCTTGCGAAATGTTTATAATAGGCTAC ATGATTCTGATTTAAACGAAAGTCGCAGGATTATCGCGCAAGGTATCCATGGTTCTAAAGCAAAAATCATTCGAGAGTTT AACGATGAAGAAAATGCTATTTTGTTTGGAGCAGCCTCTTTTTGGGAGGGAGTCGATTTTCCAGGAGATCGTTTGGAATA TTTAATTGTGACTCGCTTGCCATTCCGTTCACCGGAAGACCGGATGGTTCAATTTGCACGTAAGAATAAGCGCTCCTCCT TTATGAGTTTTGTCTTACCAGATGCCTTGTTAACTTTCAAACAAGGGATCGGGAGGTTGATTCGTAATAGTGATGATACA GGGGTAGCAGTAATGTTAGATAACCGTATTATTAATAAAGATTATGGTAAATTGTTTATTAAACAGCTGCCAAGTGGCGT AAATGCCAATTTAGGTAATATTAATGAAGTCAAAGAAAGAGTGAATAATTTCTTTAATAATCAAGAATAG
Upstream 100 bases:
>100_bases GGTCCAAATTAAATGATACCTTAAATAAAACAATTGTTCTATGTAGAGAAGGTAAACATTTGGTAAAATTAATAGGTAGA TAACAAAGTGGAGATGTGAA
Downstream 100 bases:
>100_bases CTTTCTTTGAAGCTGACTTTTGATATATAATCATTTTGTTAGTGTTAGACGAGGGGTATTATGGCAGAAAAAAATAATAA GCATCCATTTTGGTTAATCG
Product: Rad3-related DNA helicase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 929; Mature: 929
Protein sequence:
>929_residues MNKTKYAVVDLEMTGSDFDGDNRIIQIGCAFVENGKIVDTFQSKVNPQRPIPAGITKLTGITDEQVQNAPKFNDIVDEVY RKLVDTVFVAHNVEFDFPFLNQELVRSGYPELNIPAVDTVSLSQIVFSFTKGYRLRDLTSYLKIEHDDPHSADSDAIATA NLLIAIKKNLQQLPIVTLERLVELGKDLPRQTLSILKDALHENKQNPQKIDVDLMVVDGVALKKPIALQTEHQADEKLVY PRGKREKEQLYNGTLSWRKLQGSIMNFTHQQFSVTEGFKKHVVIEAPTGSGKTLGYLFPLSYIAREQQRKVVVSVPTTIL QNQVLAVGRQQLNAILETPMQFAILKGSSNYLNLEAFMKSITHQTLSKDSRLVAMKILVWLTKTDTGDFDEINHHINFSN FVDGIRHHGKTVLNPKSKFFEYDFYRRAMKKLKYADFIITNHRYLALHADEIGESDQQPLLVIDEAQHFPTIVSNMNQKF LDLNELMMETHRLVSRLVMNHKRNLIQATKHQPLAGFHIRRFVNSLEHINTQITEIQQKLFDKFVAPRKKNLYENQPAEI VIKNNVINQMAKHEFHQVVQELANTFIEFDALDRFFKDQELTPEIRDDWAQIKAFQSNLTKFYDAIREITDHLNQNIYWI TLGPNHDPGSIRIGKEILDTGEFYRQKIEPFYHKVLLIGGTLFFEHKRSYFLDQFGLHKPETSIRTFRRGVDFENQLDFE VLQSDFTIDYESNQDQYADFLAEAIEALTRDVNRQTLVLFNSLETLRNVYNRLHDSDLNESRRIIAQGIHGSKAKIIREF NDEENAILFGAASFWEGVDFPGDRLEYLIVTRLPFRSPEDRMVQFARKNKRSSFMSFVLPDALLTFKQGIGRLIRNSDDT GVAVMLDNRIINKDYGKLFIKQLPSGVNANLGNINEVKERVNNFFNNQE
Sequences:
>Translated_929_residues MNKTKYAVVDLEMTGSDFDGDNRIIQIGCAFVENGKIVDTFQSKVNPQRPIPAGITKLTGITDEQVQNAPKFNDIVDEVY RKLVDTVFVAHNVEFDFPFLNQELVRSGYPELNIPAVDTVSLSQIVFSFTKGYRLRDLTSYLKIEHDDPHSADSDAIATA NLLIAIKKNLQQLPIVTLERLVELGKDLPRQTLSILKDALHENKQNPQKIDVDLMVVDGVALKKPIALQTEHQADEKLVY PRGKREKEQLYNGTLSWRKLQGSIMNFTHQQFSVTEGFKKHVVIEAPTGSGKTLGYLFPLSYIAREQQRKVVVSVPTTIL QNQVLAVGRQQLNAILETPMQFAILKGSSNYLNLEAFMKSITHQTLSKDSRLVAMKILVWLTKTDTGDFDEINHHINFSN FVDGIRHHGKTVLNPKSKFFEYDFYRRAMKKLKYADFIITNHRYLALHADEIGESDQQPLLVIDEAQHFPTIVSNMNQKF LDLNELMMETHRLVSRLVMNHKRNLIQATKHQPLAGFHIRRFVNSLEHINTQITEIQQKLFDKFVAPRKKNLYENQPAEI VIKNNVINQMAKHEFHQVVQELANTFIEFDALDRFFKDQELTPEIRDDWAQIKAFQSNLTKFYDAIREITDHLNQNIYWI TLGPNHDPGSIRIGKEILDTGEFYRQKIEPFYHKVLLIGGTLFFEHKRSYFLDQFGLHKPETSIRTFRRGVDFENQLDFE VLQSDFTIDYESNQDQYADFLAEAIEALTRDVNRQTLVLFNSLETLRNVYNRLHDSDLNESRRIIAQGIHGSKAKIIREF NDEENAILFGAASFWEGVDFPGDRLEYLIVTRLPFRSPEDRMVQFARKNKRSSFMSFVLPDALLTFKQGIGRLIRNSDDT GVAVMLDNRIINKDYGKLFIKQLPSGVNANLGNINEVKERVNNFFNNQE >Mature_929_residues MNKTKYAVVDLEMTGSDFDGDNRIIQIGCAFVENGKIVDTFQSKVNPQRPIPAGITKLTGITDEQVQNAPKFNDIVDEVY RKLVDTVFVAHNVEFDFPFLNQELVRSGYPELNIPAVDTVSLSQIVFSFTKGYRLRDLTSYLKIEHDDPHSADSDAIATA NLLIAIKKNLQQLPIVTLERLVELGKDLPRQTLSILKDALHENKQNPQKIDVDLMVVDGVALKKPIALQTEHQADEKLVY PRGKREKEQLYNGTLSWRKLQGSIMNFTHQQFSVTEGFKKHVVIEAPTGSGKTLGYLFPLSYIAREQQRKVVVSVPTTIL QNQVLAVGRQQLNAILETPMQFAILKGSSNYLNLEAFMKSITHQTLSKDSRLVAMKILVWLTKTDTGDFDEINHHINFSN FVDGIRHHGKTVLNPKSKFFEYDFYRRAMKKLKYADFIITNHRYLALHADEIGESDQQPLLVIDEAQHFPTIVSNMNQKF LDLNELMMETHRLVSRLVMNHKRNLIQATKHQPLAGFHIRRFVNSLEHINTQITEIQQKLFDKFVAPRKKNLYENQPAEI VIKNNVINQMAKHEFHQVVQELANTFIEFDALDRFFKDQELTPEIRDDWAQIKAFQSNLTKFYDAIREITDHLNQNIYWI TLGPNHDPGSIRIGKEILDTGEFYRQKIEPFYHKVLLIGGTLFFEHKRSYFLDQFGLHKPETSIRTFRRGVDFENQLDFE VLQSDFTIDYESNQDQYADFLAEAIEALTRDVNRQTLVLFNSLETLRNVYNRLHDSDLNESRRIIAQGIHGSKAKIIREF NDEENAILFGAASFWEGVDFPGDRLEYLIVTRLPFRSPEDRMVQFARKNKRSSFMSFVLPDALLTFKQGIGRLIRNSDDT GVAVMLDNRIINKDYGKLFIKQLPSGVNANLGNINEVKERVNNFFNNQE
Specific function: Probable helicase involved in DNA repair and perhaps also replication [H]
COG id: COG1199
COG function: function code KL; Rad3-related DNA helicases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1788110, Length=178, Percent_Identity=34.8314606741573, Blast_Score=115, Evalue=1e-26, Organism=Escherichia coli, GI1787018, Length=218, Percent_Identity=25.6880733944954, Blast_Score=69, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR006054 - InterPro: IPR006310 - InterPro: IPR006055 - InterPro: IPR013520 - InterPro: IPR014013 - InterPro: IPR006555 - InterPro: IPR001650 - InterPro: IPR006935 - InterPro: IPR012337 [H]
Pfam domain/function: PF00929 Exonuc_X-T; PF04851 ResIII [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 107176; Mature: 107176
Theoretical pI: Translated: 7.00; Mature: 7.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKTKYAVVDLEMTGSDFDGDNRIIQIGCAFVENGKIVDTFQSKVNPQRPIPAGITKLTG CCCCEEEEEEEEECCCCCCCCCCEEEEEEEEECCCCEEEHHHHCCCCCCCCCCCHHHHCC ITDEQVQNAPKFNDIVDEVYRKLVDTVFVAHNVEFDFPFLNQELVRSGYPELNIPAVDTV CCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCHH SLSQIVFSFTKGYRLRDLTSYLKIEHDDPHSADSDAIATANLLIAIKKNLQQLPIVTLER HHHHHHHHHHCCCHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHH LVELGKDLPRQTLSILKDALHENKQNPQKIDVDLMVVDGVALKKPIALQTEHQADEKLVY HHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCHHHCCCCEECCCCCCCCCEEC PRGKREKEQLYNGTLSWRKLQGSIMNFTHQQFSVTEGFKKHVVIEAPTGSGKTLGYLFPL CCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEHHHHHH SYIAREQQRKVVVSVPTTILQNQVLAVGRQQLNAILETPMQFAILKGSSNYLNLEAFMKS HHHHHHHHCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCHHEEEEECCCCEEEHHHHHHH ITHQTLSKDSRLVAMKILVWLTKTDTGDFDEINHHINFSNFVDGIRHHGKTVLNPKSKFF HHHHHHCCCCHHHHEEHHHHEECCCCCCHHHHHCCCCHHHHHHHHHHCCCCEECCHHHHH EYDFYRRAMKKLKYADFIITNHRYLALHADEIGESDQQPLLVIDEAQHFPTIVSNMNQKF HHHHHHHHHHHHHHHHEEEECCEEEEEEHHHCCCCCCCCEEEEECCHHHHHHHHCCCHHH LDLNELMMETHRLVSRLVMNHKRNLIQATKHQPLAGFHIRRFVNSLEHINTQITEIQQKL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH FDKFVAPRKKNLYENQPAEIVIKNNVINQMAKHEFHQVVQELANTFIEFDALDRFFKDQE HHHHHCCHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC LTPEIRDDWAQIKAFQSNLTKFYDAIREITDHLNQNIYWITLGPNHDPGSIRIGKEILDT CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEECHHHHHH GEFYRQKIEPFYHKVLLIGGTLFFEHKRSYFLDQFGLHKPETSIRTFRRGVDFENQLDFE HHHHHHHHHHHHHHHHHHCCHHEEHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCHH VLQSDFTIDYESNQDQYADFLAEAIEALTRDVNRQTLVLFNSLETLRNVYNRLHDSDLNE HHHCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHCCCCCCH SRRIIAQGIHGSKAKIIREFNDEENAILFGAASFWEGVDFPGDRLEYLIVTRLPFRSPED HHHHHHHCCCCCHHHHHHHCCCCCCEEEEEEHHHHCCCCCCCCCEEEEEEEECCCCCCHH RMVQFARKNKRSSFMSFVLPDALLTFKQGIGRLIRNSDDTGVAVMLDNRIINKDYGKLFI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCEECCCHHHHHHH KQLPSGVNANLGNINEVKERVNNFFNNQE HHCCCCCCCCCCCHHHHHHHHHHHCCCCC >Mature Secondary Structure MNKTKYAVVDLEMTGSDFDGDNRIIQIGCAFVENGKIVDTFQSKVNPQRPIPAGITKLTG CCCCEEEEEEEEECCCCCCCCCCEEEEEEEEECCCCEEEHHHHCCCCCCCCCCCHHHHCC ITDEQVQNAPKFNDIVDEVYRKLVDTVFVAHNVEFDFPFLNQELVRSGYPELNIPAVDTV CCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCHH SLSQIVFSFTKGYRLRDLTSYLKIEHDDPHSADSDAIATANLLIAIKKNLQQLPIVTLER HHHHHHHHHHCCCHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHH LVELGKDLPRQTLSILKDALHENKQNPQKIDVDLMVVDGVALKKPIALQTEHQADEKLVY HHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCHHHCCCCEECCCCCCCCCEEC PRGKREKEQLYNGTLSWRKLQGSIMNFTHQQFSVTEGFKKHVVIEAPTGSGKTLGYLFPL CCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEHHHHHH SYIAREQQRKVVVSVPTTILQNQVLAVGRQQLNAILETPMQFAILKGSSNYLNLEAFMKS HHHHHHHHCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCHHEEEEECCCCEEEHHHHHHH ITHQTLSKDSRLVAMKILVWLTKTDTGDFDEINHHINFSNFVDGIRHHGKTVLNPKSKFF HHHHHHCCCCHHHHEEHHHHEECCCCCCHHHHHCCCCHHHHHHHHHHCCCCEECCHHHHH EYDFYRRAMKKLKYADFIITNHRYLALHADEIGESDQQPLLVIDEAQHFPTIVSNMNQKF HHHHHHHHHHHHHHHHEEEECCEEEEEEHHHCCCCCCCCEEEEECCHHHHHHHHCCCHHH LDLNELMMETHRLVSRLVMNHKRNLIQATKHQPLAGFHIRRFVNSLEHINTQITEIQQKL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH FDKFVAPRKKNLYENQPAEIVIKNNVINQMAKHEFHQVVQELANTFIEFDALDRFFKDQE HHHHHCCHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC LTPEIRDDWAQIKAFQSNLTKFYDAIREITDHLNQNIYWITLGPNHDPGSIRIGKEILDT CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEECHHHHHH GEFYRQKIEPFYHKVLLIGGTLFFEHKRSYFLDQFGLHKPETSIRTFRRGVDFENQLDFE HHHHHHHHHHHHHHHHHHCCHHEEHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCHH VLQSDFTIDYESNQDQYADFLAEAIEALTRDVNRQTLVLFNSLETLRNVYNRLHDSDLNE HHHCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHCCCCCCH SRRIIAQGIHGSKAKIIREFNDEENAILFGAASFWEGVDFPGDRLEYLIVTRLPFRSPED HHHHHHHCCCCCHHHHHHHCCCCCCEEEEEEHHHHCCCCCCCCCEEEEEEEECCCCCCHH RMVQFARKNKRSSFMSFVLPDALLTFKQGIGRLIRNSDDTGVAVMLDNRIINKDYGKLFI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCEECCCHHHHHHH KQLPSGVNANLGNINEVKERVNNFFNNQE HHCCCCCCCCCCCHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8760912; 9384377 [H]