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The map label for this gene is rbfA

Identifier: 116492657

GI number: 116492657

Start: 893902

End: 894252

Strand: Direct

Name: rbfA

Synonym: PEPE_0891

Alternate gene names: 116492657

Gene position: 893902-894252 (Clockwise)

Preceding gene: 116492656

Following gene: 116492658

Centisome position: 48.78

GC content: 37.89

Gene sequence:

>351_bases
ATGGCTCGACAATACCGTTCGGATCGCTTGTCTCAAGAAATTGAAAAAGAAGTGAGTGATATCCTTCGTCGTCGTGTGCG
TGATCCTCGCGTTGAGGGAGTTACAATCACTGGCGTTGATGTGACAGGTGATTTACAACAAGCAAAAATTTATTACAGTA
TTTTATCTGATAAAGCATCAGATGATCAAAAAACCAAGGCGGGTCTTGAAAAGGCATCTGGTTTAATTCGTAAAGAGTTA
GGTAGCCGCCTATCAATTTACAAGACACCGGAACTTAGTTTCATCAGAGATGAATCTGTTCAATATGGTGATAAAATTGA
TCAATTACTCAATAAATTAAATCGTGATTAA

Upstream 100 bases:

>100_bases
GGTTTAACGGTTGAAAATTACAATGATATCAAAATTGGTGATGTTATCGAAGCATACCGCATGAAAGAAGTACCAGTTGA
GTAGATAGGAGGAATCTATT

Downstream 100 bases:

>100_bases
TCCAAAAGAGTATGCTTAATGGCATGCTCTTTTTTGTTTGGACCTAAATAAATAGGACGAAATCTTTTTAATACGATATA
AGTAATGTAAAATGGCTATG

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 115

Protein sequence:

>116_residues
MARQYRSDRLSQEIEKEVSDILRRRVRDPRVEGVTITGVDVTGDLQQAKIYYSILSDKASDDQKTKAGLEKASGLIRKEL
GSRLSIYKTPELSFIRDESVQYGDKIDQLLNKLNRD

Sequences:

>Translated_116_residues
MARQYRSDRLSQEIEKEVSDILRRRVRDPRVEGVTITGVDVTGDLQQAKIYYSILSDKASDDQKTKAGLEKASGLIRKEL
GSRLSIYKTPELSFIRDESVQYGDKIDQLLNKLNRD
>Mature_115_residues
ARQYRSDRLSQEIEKEVSDILRRRVRDPRVEGVTITGVDVTGDLQQAKIYYSILSDKASDDQKTKAGLEKASGLIRKELG
SRLSIYKTPELSFIRDESVQYGDKIDQLLNKLNRD

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=118, Percent_Identity=38.135593220339, Blast_Score=81, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_PEDPA (Q03FS2)

Other databases:

- EMBL:   CP000422
- RefSeq:   YP_804392.1
- ProteinModelPortal:   Q03FS2
- SMR:   Q03FS2
- STRING:   Q03FS2
- GeneID:   4417851
- GenomeReviews:   CP000422_GR
- KEGG:   ppe:PEPE_0891
- NMPDR:   fig|278197.10.peg.793
- eggNOG:   COG0858
- HOGENOM:   HBG751055
- OMA:   SIEYGNR
- PhylomeDB:   Q03FS2
- BioCyc:   PPEN278197:PEPE_0891-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 13290; Mature: 13159

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARQYRSDRLSQEIEKEVSDILRRRVRDPRVEGVTITGVDVTGDLQQAKIYYSILSDKAS
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCC
DDQKTKAGLEKASGLIRKELGSRLSIYKTPELSFIRDESVQYGDKIDQLLNKLNRD
CHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ARQYRSDRLSQEIEKEVSDILRRRVRDPRVEGVTITGVDVTGDLQQAKIYYSILSDKAS
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCC
DDQKTKAGLEKASGLIRKELGSRLSIYKTPELSFIRDESVQYGDKIDQLLNKLNRD
CHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA