| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is 116492548
Identifier: 116492548
GI number: 116492548
Start: 795647
End: 796228
Strand: Direct
Name: 116492548
Synonym: PEPE_0780
Alternate gene names: NA
Gene position: 795647-796228 (Clockwise)
Preceding gene: 116492547
Following gene: 116492549
Centisome position: 43.42
GC content: 30.76
Gene sequence:
>582_bases ATGAGTGAAGTTAAACTTACAAGATTTGAAAGAACATCATTAATTAATCAATTTAGAATTATGAAAGCATTGAATATTAG TGACGATTATGGTGATAAAGAAATTTTCGATAAGAATATAAAGATTTTACATAACGGATTCGAATACTACTATGATGAGG TTATTTTAGATGCTGGTGGTAGTGTAAGTGTAGAGGTTACGAAAGAAGTCATTGACATTCTAGATGCTTATGATTTTTGT GCAGCTGTTTACACAGAAGGTTCTATTAAGTTAGACCAGGACCTAGTAAATGAGTTAACAGAGTTTGGATTTGATTTAAA TGATAGCGATCACATTAGCTACTACAGTATTGCCAACTGGTTACTTAATGATAATAGGTTTACTAATCTTGGTGAATTAA TGCGTAAGGATATGAACGGAATTGATATTAACGACCATGGGTTTAGTAGAAATATTAATGAAAAACTGAATGTTGCAAAT CGTTATAAAGATTTTATTCGTGGATCAGATTCTAGTTTTAAAGACGCTACTGTGGATGATATCAGATACATTCTAACTGG AGTTAACAAGATAACTGAATAA
Upstream 100 bases:
>100_bases CATCTTATTTTTTAAATTAAATTTCAAAATGTTTTGTTTTTTACGGATTTTTAAAAAATAACCTTTATAATTAAATTATA AAATATAGGAGGTAGATAAA
Downstream 100 bases:
>100_bases TTAATTTAACTATTTAAGCCACTCAATTAATACGTTGTGTGGCTTTTTATTGTCCATTAAAGGAGGTGTGGTGATATGCA ATGGTAGACAAAACTAGACA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 193; Mature: 192
Protein sequence:
>193_residues MSEVKLTRFERTSLINQFRIMKALNISDDYGDKEIFDKNIKILHNGFEYYYDEVILDAGGSVSVEVTKEVIDILDAYDFC AAVYTEGSIKLDQDLVNELTEFGFDLNDSDHISYYSIANWLLNDNRFTNLGELMRKDMNGIDINDHGFSRNINEKLNVAN RYKDFIRGSDSSFKDATVDDIRYILTGVNKITE
Sequences:
>Translated_193_residues MSEVKLTRFERTSLINQFRIMKALNISDDYGDKEIFDKNIKILHNGFEYYYDEVILDAGGSVSVEVTKEVIDILDAYDFC AAVYTEGSIKLDQDLVNELTEFGFDLNDSDHISYYSIANWLLNDNRFTNLGELMRKDMNGIDINDHGFSRNINEKLNVAN RYKDFIRGSDSSFKDATVDDIRYILTGVNKITE >Mature_192_residues SEVKLTRFERTSLINQFRIMKALNISDDYGDKEIFDKNIKILHNGFEYYYDEVILDAGGSVSVEVTKEVIDILDAYDFCA AVYTEGSIKLDQDLVNELTEFGFDLNDSDHISYYSIANWLLNDNRFTNLGELMRKDMNGIDINDHGFSRNINEKLNVANR YKDFIRGSDSSFKDATVDDIRYILTGVNKITE
Specific function: Unknown
COG id: COG3013
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22249; Mature: 22118
Theoretical pI: Translated: 4.28; Mature: 4.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEVKLTRFERTSLINQFRIMKALNISDDYGDKEIFDKNIKILHNGFEYYYDEVILDAGG CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHCCCCC SVSVEVTKEVIDILDAYDFCAAVYTEGSIKLDQDLVNELTEFGFDLNDSDHISYYSIANW CEEEHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHCCCCCCCCCCCHHHHHHHH LLNDNRFTNLGELMRKDMNGIDINDHGFSRNINEKLNVANRYKDFIRGSDSSFKDATVDD HHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHH IRYILTGVNKITE HHHHHHHHHHHCC >Mature Secondary Structure SEVKLTRFERTSLINQFRIMKALNISDDYGDKEIFDKNIKILHNGFEYYYDEVILDAGG CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHCCCCC SVSVEVTKEVIDILDAYDFCAAVYTEGSIKLDQDLVNELTEFGFDLNDSDHISYYSIANW CEEEHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHCCCCCCCCCCCHHHHHHHH LLNDNRFTNLGELMRKDMNGIDINDHGFSRNINEKLNVANRYKDFIRGSDSSFKDATVDD HHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHH IRYILTGVNKITE HHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA