| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is 116492525
Identifier: 116492525
GI number: 116492525
Start: 785993
End: 786649
Strand: Direct
Name: 116492525
Synonym: PEPE_0757
Alternate gene names: NA
Gene position: 785993-786649 (Clockwise)
Preceding gene: 116492524
Following gene: 116492526
Centisome position: 42.89
GC content: 33.03
Gene sequence:
>657_bases ATGAGTGAAAAAACGTTATATCAAAAGCTTCAAAACATCCACAAAAAAGTACCATACATTCAAAAATCCCAACAAGCTTC AAAGTATTCGTACGCTGGGTCTTCAGATGTCTTAGGTACAATTCATGGTTTGATGGATGAAGAAAAATTAATTTTAATAC CGCAAATTACTAATAAAAACACTGAAACAAGCCAAAATCGAAAAGGATCTACCGTAATATTTACTGAATTAATGATGACT ATGACGTGGGTTAATTCAGATAATCCAGATGAAAAATTAGAGTGTCAGTGGTACGCACAAGGAATTGACACAGCTGGAGA AAAAGGTGTTGGGAAAGCACTCACTTATGGCGAGAAATATTTTTTATTAAAATTCTTCAATGTAGCCACAGACGATTTAG ATCCAGACGCATTTCAAGAAAATGTTAAAGCTCAAAAAGCACCCGAATTGATAAACGATGAACAAAAGAAGACTTTAAAA GAATTATTTAACAGTATGGCAAGTGTTACCAAAACACCGATTGAAAAAGTTTCTAAAGCTTATCTTAAAAAAGTTAAGTC AGATTCCATTGAAAAATTGCAGGAAGATACTGCAATCGGATTAATTGAATTGGTAACTAACCAACTTAATAAACAGACAG AGAAAGCGGGTAAGTAA
Upstream 100 bases:
>100_bases TTCGTGAAGGTGGTCAGTTAATCGACACTGAAACAGGAATGGTACTACCTTACAGAGCTAAACGTAAGGCAGACAAGTTA ACAGTTAAGGCGGTGGAAGC
Downstream 100 bases:
>100_bases TTATGCGACAAATAACTATATCTGGAAATATTGGCAATGATGTACAAGTTAACTCAACTCAAAGTGGAAACAAAGTGGCT AACTTTAATGTGGCAGTACG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 218; Mature: 217
Protein sequence:
>218_residues MSEKTLYQKLQNIHKKVPYIQKSQQASKYSYAGSSDVLGTIHGLMDEEKLILIPQITNKNTETSQNRKGSTVIFTELMMT MTWVNSDNPDEKLECQWYAQGIDTAGEKGVGKALTYGEKYFLLKFFNVATDDLDPDAFQENVKAQKAPELINDEQKKTLK ELFNSMASVTKTPIEKVSKAYLKKVKSDSIEKLQEDTAIGLIELVTNQLNKQTEKAGK
Sequences:
>Translated_218_residues MSEKTLYQKLQNIHKKVPYIQKSQQASKYSYAGSSDVLGTIHGLMDEEKLILIPQITNKNTETSQNRKGSTVIFTELMMT MTWVNSDNPDEKLECQWYAQGIDTAGEKGVGKALTYGEKYFLLKFFNVATDDLDPDAFQENVKAQKAPELINDEQKKTLK ELFNSMASVTKTPIEKVSKAYLKKVKSDSIEKLQEDTAIGLIELVTNQLNKQTEKAGK >Mature_217_residues SEKTLYQKLQNIHKKVPYIQKSQQASKYSYAGSSDVLGTIHGLMDEEKLILIPQITNKNTETSQNRKGSTVIFTELMMTM TWVNSDNPDEKLECQWYAQGIDTAGEKGVGKALTYGEKYFLLKFFNVATDDLDPDAFQENVKAQKAPELINDEQKKTLKE LFNSMASVTKTPIEKVSKAYLKKVKSDSIEKLQEDTAIGLIELVTNQLNKQTEKAGK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24611; Mature: 24480
Theoretical pI: Translated: 7.49; Mature: 7.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEKTLYQKLQNIHKKVPYIQKSQQASKYSYAGSSDVLGTIHGLMDEEKLILIPQITNKN CCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEECCCCCC TETSQNRKGSTVIFTELMMTMTWVNSDNPDEKLECQWYAQGIDTAGEKGVGKALTYGEKY CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHCCCHH FLLKFFNVATDDLDPDAFQENVKAQKAPELINDEQKKTLKELFNSMASVTKTPIEKVSKA HHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH YLKKVKSDSIEKLQEDTAIGLIELVTNQLNKQTEKAGK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SEKTLYQKLQNIHKKVPYIQKSQQASKYSYAGSSDVLGTIHGLMDEEKLILIPQITNKN CHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEECCCCCC TETSQNRKGSTVIFTELMMTMTWVNSDNPDEKLECQWYAQGIDTAGEKGVGKALTYGEKY CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHCCCHH FLLKFFNVATDDLDPDAFQENVKAQKAPELINDEQKKTLKELFNSMASVTKTPIEKVSKA HHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH YLKKVKSDSIEKLQEDTAIGLIELVTNQLNKQTEKAGK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA