| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is yqgF [H]
Identifier: 116492495
GI number: 116492495
Start: 766682
End: 768772
Strand: Direct
Name: yqgF [H]
Synonym: PEPE_0727
Alternate gene names: 116492495
Gene position: 766682-768772 (Clockwise)
Preceding gene: 116492493
Following gene: 116492496
Centisome position: 41.84
GC content: 38.74
Gene sequence:
>2091_bases ATGAAAAATCCTAAAAAAATTAGGCGACCAAAAAGTGAATTACCATTTCGATTGAATTTGATCTTTTTTGTTGTCTTTGC GTTATTACTACTGTTAGTTGGACAATTAGGGTATTTACAAATTTTGTATGGCTCGAAGTTGCAAGCAGTCGTAAATCGAA CTGATAACACCGTTGAAACCAATAATGTTCAGCGGGGGGTGATTTACGATTCTACTGGAAAGGTTTTAGTAGGAAATACT GCGCATCAGGCTATTTCGTATACCAAGGGTGCCAACGTAATGGCTCAAGACATGTTCAATATTGCTAATACACTTGGAAA ATATCTTGAAGCCAATGATACAGAGTTGAGTCGAACAGATATTGCGAATTACTTGCTGGCAGATTCTAAAAATAGTAAAT ACTACGAAAAGAAAATTACTAATCGTGAAAATTTGAGTAGTAAGGCAGTTCAGGAAAAAGAAATTGACTATATCAAAAAT TCGGATATTAAGTTAAGTTCAAAGGAAGAAAATGCTGCTCGAATTTTTAAAATTATGAATGGAGCTTACCAACTTTCTAC GGTTTATATTAAGGAAACGGATGTTTCTAGTAAGGAGCTATCTGAGATTGGTGAGCACCTTTCTGAGATGCCTGGGGTCA AAATTTCAACAAGTTGGACTCGTAGCTATCCAGAGGGGAATGACATTAAGTCCCTAGCAGGAACGGTAAGTAGTTCCAAA ACTGGTCTACCTAGTGATGAAGTTAACACTTTATTAGCTGAAGGTTATGCTCGTAATGATAGCGTGGGACAAAGTTATCT CGAAAAACAGTATGAATCAGTTTTAAAGGGAACCAAATCGCAGACTGCCATTCAAGTTAGTTCGGGAGGACAGATTGTTA AGAAAGTTCAACAATATGCTGGTAAAAAAGGTGATAATCTTGTTTTAACGATTAACTCCAAGTTCCAAGAAGAAGTCCAA AAAATTATGAAAGAGGCCTCAAAAAACGCTGGTGGACAATCAACTGGTGGCTATGCAGTGGTAATGAATCCTAAAACAGG AGCAGTGATTGCGCTTGCTGGTGCTGACCGAAATCCTTCAACAGGTAAGATGACAGATAATGTCTTAGGAACAATTAATG AACCAATTGTAATGGGTTCCGTGGTTAAGGGGGCAACAATTTCTGGAGCTTTGATGGACGGGGTTATTACTCCTAGCAAT AATACCTTGATTGATGAACCAATTAAGGTGGCTGGAACAGGATCAAAGAGTTCTTGGTTTAATAGTACTGGTAGTGCAAA TATGTCAGTTGACGCTTCGAGAGCGTTAGAAGTTTCTTCTAACTCATATATGATGCAATTAGCCATGAAAGAAGGAGGGT TTAAGTACTCCTCAGGGGCATCCTTGTCAGGGATGAATCCTAATGTCTTTAACAAATTGCGTGGATATTTTGAGCAATTC GGTCTAGGTACTAAAACAGGCATTGACCTTCCTGGTGAATCTTCCGGGTTTAAAGGACCTACTGGCTCTGCTAATATTGG TAAAGCGCTCGATTTATCTTTTGGTAATTATGATGCTTATACAACCATTCAAGTTGCGCAATACATGTCGACCATTGCAA ATGGTGGTTATCGTGTTGCTCCACATGTGGTTGAACAAATTAGAAGTAGTAAACAAAATGGAAAAATGGGAGCAGTCCAA AAGACCGTTTCACCAACTGTTTTAAATCAAGTTGATATGACTTCTGCACAGAGAAAATTAGTTACAGATGGGTTATATGA CGTGGTTCATGGAAGTAATAAATATAAGACCGGTGGGCCACTAGCTGGTATTTCTCCCGGAATTTCTGCTAAAACTGGTA CAGCTCAGACGACAACCAATGGGAAAACAACCGTAACGTTGTCATTAGCTTCTTATGCTCCATCTAATGATCCTCAAGTA GTTGTAGCACTAGCTCTGCCAGGATTAAGTACAAATGCTGAATCGGATAATATGACGGCTGCTAAGAAGATCTATGCGGC ATACTGGAAATATGTCCAATCCAAATCAACCCTTACTAATCCAACTAAAGCGACCTCTGAAACCGCTGCTCAGAACTTGA ATTCCAATTAA
Upstream 100 bases:
>100_bases GATAGCACAAAACATGCTTAAGACTTTGTTAATACTATTAGTACACCGATATATTTTCTGGTAGAATGAACGAAGTGATC TAAAAGGAGCAACATAAATA
Downstream 100 bases:
>100_bases TCGCAATTGGTTCTGGAAAAATTTTCAGAATAGTGGTAACATGTACAATGCTAGTGGATTTTCGAATTCAAATATATATA TTAATGGAGGTCATTCCAAT
Product: cell division protein FtsI/penicillin-binding protein 2
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 696; Mature: 696
Protein sequence:
>696_residues MKNPKKIRRPKSELPFRLNLIFFVVFALLLLLVGQLGYLQILYGSKLQAVVNRTDNTVETNNVQRGVIYDSTGKVLVGNT AHQAISYTKGANVMAQDMFNIANTLGKYLEANDTELSRTDIANYLLADSKNSKYYEKKITNRENLSSKAVQEKEIDYIKN SDIKLSSKEENAARIFKIMNGAYQLSTVYIKETDVSSKELSEIGEHLSEMPGVKISTSWTRSYPEGNDIKSLAGTVSSSK TGLPSDEVNTLLAEGYARNDSVGQSYLEKQYESVLKGTKSQTAIQVSSGGQIVKKVQQYAGKKGDNLVLTINSKFQEEVQ KIMKEASKNAGGQSTGGYAVVMNPKTGAVIALAGADRNPSTGKMTDNVLGTINEPIVMGSVVKGATISGALMDGVITPSN NTLIDEPIKVAGTGSKSSWFNSTGSANMSVDASRALEVSSNSYMMQLAMKEGGFKYSSGASLSGMNPNVFNKLRGYFEQF GLGTKTGIDLPGESSGFKGPTGSANIGKALDLSFGNYDAYTTIQVAQYMSTIANGGYRVAPHVVEQIRSSKQNGKMGAVQ KTVSPTVLNQVDMTSAQRKLVTDGLYDVVHGSNKYKTGGPLAGISPGISAKTGTAQTTTNGKTTVTLSLASYAPSNDPQV VVALALPGLSTNAESDNMTAAKKIYAAYWKYVQSKSTLTNPTKATSETAAQNLNSN
Sequences:
>Translated_696_residues MKNPKKIRRPKSELPFRLNLIFFVVFALLLLLVGQLGYLQILYGSKLQAVVNRTDNTVETNNVQRGVIYDSTGKVLVGNT AHQAISYTKGANVMAQDMFNIANTLGKYLEANDTELSRTDIANYLLADSKNSKYYEKKITNRENLSSKAVQEKEIDYIKN SDIKLSSKEENAARIFKIMNGAYQLSTVYIKETDVSSKELSEIGEHLSEMPGVKISTSWTRSYPEGNDIKSLAGTVSSSK TGLPSDEVNTLLAEGYARNDSVGQSYLEKQYESVLKGTKSQTAIQVSSGGQIVKKVQQYAGKKGDNLVLTINSKFQEEVQ KIMKEASKNAGGQSTGGYAVVMNPKTGAVIALAGADRNPSTGKMTDNVLGTINEPIVMGSVVKGATISGALMDGVITPSN NTLIDEPIKVAGTGSKSSWFNSTGSANMSVDASRALEVSSNSYMMQLAMKEGGFKYSSGASLSGMNPNVFNKLRGYFEQF GLGTKTGIDLPGESSGFKGPTGSANIGKALDLSFGNYDAYTTIQVAQYMSTIANGGYRVAPHVVEQIRSSKQNGKMGAVQ KTVSPTVLNQVDMTSAQRKLVTDGLYDVVHGSNKYKTGGPLAGISPGISAKTGTAQTTTNGKTTVTLSLASYAPSNDPQV VVALALPGLSTNAESDNMTAAKKIYAAYWKYVQSKSTLTNPTKATSETAAQNLNSN >Mature_696_residues MKNPKKIRRPKSELPFRLNLIFFVVFALLLLLVGQLGYLQILYGSKLQAVVNRTDNTVETNNVQRGVIYDSTGKVLVGNT AHQAISYTKGANVMAQDMFNIANTLGKYLEANDTELSRTDIANYLLADSKNSKYYEKKITNRENLSSKAVQEKEIDYIKN SDIKLSSKEENAARIFKIMNGAYQLSTVYIKETDVSSKELSEIGEHLSEMPGVKISTSWTRSYPEGNDIKSLAGTVSSSK TGLPSDEVNTLLAEGYARNDSVGQSYLEKQYESVLKGTKSQTAIQVSSGGQIVKKVQQYAGKKGDNLVLTINSKFQEEVQ KIMKEASKNAGGQSTGGYAVVMNPKTGAVIALAGADRNPSTGKMTDNVLGTINEPIVMGSVVKGATISGALMDGVITPSN NTLIDEPIKVAGTGSKSSWFNSTGSANMSVDASRALEVSSNSYMMQLAMKEGGFKYSSGASLSGMNPNVFNKLRGYFEQF GLGTKTGIDLPGESSGFKGPTGSANIGKALDLSFGNYDAYTTIQVAQYMSTIANGGYRVAPHVVEQIRSSKQNGKMGAVQ KTVSPTVLNQVDMTSAQRKLVTDGLYDVVHGSNKYKTGGPLAGISPGISAKTGTAQTTTNGKTTVTLSLASYAPSNDPQV VVALALPGLSTNAESDNMTAAKKIYAAYWKYVQSKSTLTNPTKATSETAAQNLNSN
Specific function: Cell Wall Formation; Pbp-2 Is Responsible For The Determination Of The Rod Shape Of The Cell. Its Synthesize Cross- Linked Peptidoglycan From The Lipid Intermediates. [C]
COG id: COG0768
COG function: function code M; Cell division protein FtsI/penicillin-binding protein 2
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI1786854, Length=513, Percent_Identity=25.3411306042885, Blast_Score=119, Evalue=6e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR005311 - InterPro: IPR001460 [H]
Pfam domain/function: PF03717 PBP_dimer; PF00905 Transpeptidase [H]
EC number: NA
Molecular weight: Translated: 74449; Mature: 74449
Theoretical pI: Translated: 9.79; Mature: 9.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNPKKIRRPKSELPFRLNLIFFVVFALLLLLVGQLGYLQILYGSKLQAVVNRTDNTVET CCCCHHHCCCHHHCCEEHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCCEEC NNVQRGVIYDSTGKVLVGNTAHQAISYTKGANVMAQDMFNIANTLGKYLEANDTELSRTD CCCCCCEEECCCCCEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHH IANYLLADSKNSKYYEKKITNRENLSSKAVQEKEIDYIKNSDIKLSSKEENAARIFKIMN HHHHHHCCCCCCCHHHHHCCCHHCCHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHC GAYQLSTVYIKETDVSSKELSEIGEHLSEMPGVKISTSWTRSYPEGNDIKSLAGTVSSSK CCEEEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHCCCC TGLPSDEVNTLLAEGYARNDSVGQSYLEKQYESVLKGTKSQTAIQVSSGGQIVKKVQQYA CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHH GKKGDNLVLTINSKFQEEVQKIMKEASKNAGGQSTGGYAVVMNPKTGAVIALAGADRNPS CCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCC TGKMTDNVLGTINEPIVMGSVVKGATISGALMDGVITPSNNTLIDEPIKVAGTGSKSSWF CCCCCHHHHHCCCCCEEECHHHCCCEECCHHHCCEECCCCCCCCCCCEEEEECCCCCCCC NSTGSANMSVDASRALEVSSNSYMMQLAMKEGGFKYSSGASLSGMNPNVFNKLRGYFEQF CCCCCCCEEECHHHEEEECCCCEEEEEEECCCCEEECCCCCCCCCCHHHHHHHHHHHHHH GLGTKTGIDLPGESSGFKGPTGSANIGKALDLSFGNYDAYTTIQVAQYMSTIANGGYRVA CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEC PHVVEQIRSSKQNGKMGAVQKTVSPTVLNQVDMTSAQRKLVTDGLYDVVHGSNKYKTGGP HHHHHHHHCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC LAGISPGISAKTGTAQTTTNGKTTVTLSLASYAPSNDPQVVVALALPGLSTNAESDNMTA CCCCCCCCCCCCCCCEEECCCCEEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCHHH AKKIYAAYWKYVQSKSTLTNPTKATSETAAQNLNSN HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCC >Mature Secondary Structure MKNPKKIRRPKSELPFRLNLIFFVVFALLLLLVGQLGYLQILYGSKLQAVVNRTDNTVET CCCCHHHCCCHHHCCEEHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCCEEC NNVQRGVIYDSTGKVLVGNTAHQAISYTKGANVMAQDMFNIANTLGKYLEANDTELSRTD CCCCCCEEECCCCCEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHH IANYLLADSKNSKYYEKKITNRENLSSKAVQEKEIDYIKNSDIKLSSKEENAARIFKIMN HHHHHHCCCCCCCHHHHHCCCHHCCHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHC GAYQLSTVYIKETDVSSKELSEIGEHLSEMPGVKISTSWTRSYPEGNDIKSLAGTVSSSK CCEEEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHCCCC TGLPSDEVNTLLAEGYARNDSVGQSYLEKQYESVLKGTKSQTAIQVSSGGQIVKKVQQYA CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHH GKKGDNLVLTINSKFQEEVQKIMKEASKNAGGQSTGGYAVVMNPKTGAVIALAGADRNPS CCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCC TGKMTDNVLGTINEPIVMGSVVKGATISGALMDGVITPSNNTLIDEPIKVAGTGSKSSWF CCCCCHHHHHCCCCCEEECHHHCCCEECCHHHCCEECCCCCCCCCCCEEEEECCCCCCCC NSTGSANMSVDASRALEVSSNSYMMQLAMKEGGFKYSSGASLSGMNPNVFNKLRGYFEQF CCCCCCCEEECHHHEEEECCCCEEEEEEECCCCEEECCCCCCCCCCHHHHHHHHHHHHHH GLGTKTGIDLPGESSGFKGPTGSANIGKALDLSFGNYDAYTTIQVAQYMSTIANGGYRVA CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEC PHVVEQIRSSKQNGKMGAVQKTVSPTVLNQVDMTSAQRKLVTDGLYDVVHGSNKYKTGGP HHHHHHHHCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC LAGISPGISAKTGTAQTTTNGKTTVTLSLASYAPSNDPQVVVALALPGLSTNAESDNMTA CCCCCCCCCCCCCCCEEECCCCEEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCHHH AKKIYAAYWKYVQSKSTLTNPTKATSETAAQNLNSN HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8969508; 9384377 [H]