Definition Pediococcus pentosaceus ATCC 25745, complete genome.
Accession NC_008525
Length 1,832,387

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The map label for this gene is yqgF [H]

Identifier: 116492495

GI number: 116492495

Start: 766682

End: 768772

Strand: Direct

Name: yqgF [H]

Synonym: PEPE_0727

Alternate gene names: 116492495

Gene position: 766682-768772 (Clockwise)

Preceding gene: 116492493

Following gene: 116492496

Centisome position: 41.84

GC content: 38.74

Gene sequence:

>2091_bases
ATGAAAAATCCTAAAAAAATTAGGCGACCAAAAAGTGAATTACCATTTCGATTGAATTTGATCTTTTTTGTTGTCTTTGC
GTTATTACTACTGTTAGTTGGACAATTAGGGTATTTACAAATTTTGTATGGCTCGAAGTTGCAAGCAGTCGTAAATCGAA
CTGATAACACCGTTGAAACCAATAATGTTCAGCGGGGGGTGATTTACGATTCTACTGGAAAGGTTTTAGTAGGAAATACT
GCGCATCAGGCTATTTCGTATACCAAGGGTGCCAACGTAATGGCTCAAGACATGTTCAATATTGCTAATACACTTGGAAA
ATATCTTGAAGCCAATGATACAGAGTTGAGTCGAACAGATATTGCGAATTACTTGCTGGCAGATTCTAAAAATAGTAAAT
ACTACGAAAAGAAAATTACTAATCGTGAAAATTTGAGTAGTAAGGCAGTTCAGGAAAAAGAAATTGACTATATCAAAAAT
TCGGATATTAAGTTAAGTTCAAAGGAAGAAAATGCTGCTCGAATTTTTAAAATTATGAATGGAGCTTACCAACTTTCTAC
GGTTTATATTAAGGAAACGGATGTTTCTAGTAAGGAGCTATCTGAGATTGGTGAGCACCTTTCTGAGATGCCTGGGGTCA
AAATTTCAACAAGTTGGACTCGTAGCTATCCAGAGGGGAATGACATTAAGTCCCTAGCAGGAACGGTAAGTAGTTCCAAA
ACTGGTCTACCTAGTGATGAAGTTAACACTTTATTAGCTGAAGGTTATGCTCGTAATGATAGCGTGGGACAAAGTTATCT
CGAAAAACAGTATGAATCAGTTTTAAAGGGAACCAAATCGCAGACTGCCATTCAAGTTAGTTCGGGAGGACAGATTGTTA
AGAAAGTTCAACAATATGCTGGTAAAAAAGGTGATAATCTTGTTTTAACGATTAACTCCAAGTTCCAAGAAGAAGTCCAA
AAAATTATGAAAGAGGCCTCAAAAAACGCTGGTGGACAATCAACTGGTGGCTATGCAGTGGTAATGAATCCTAAAACAGG
AGCAGTGATTGCGCTTGCTGGTGCTGACCGAAATCCTTCAACAGGTAAGATGACAGATAATGTCTTAGGAACAATTAATG
AACCAATTGTAATGGGTTCCGTGGTTAAGGGGGCAACAATTTCTGGAGCTTTGATGGACGGGGTTATTACTCCTAGCAAT
AATACCTTGATTGATGAACCAATTAAGGTGGCTGGAACAGGATCAAAGAGTTCTTGGTTTAATAGTACTGGTAGTGCAAA
TATGTCAGTTGACGCTTCGAGAGCGTTAGAAGTTTCTTCTAACTCATATATGATGCAATTAGCCATGAAAGAAGGAGGGT
TTAAGTACTCCTCAGGGGCATCCTTGTCAGGGATGAATCCTAATGTCTTTAACAAATTGCGTGGATATTTTGAGCAATTC
GGTCTAGGTACTAAAACAGGCATTGACCTTCCTGGTGAATCTTCCGGGTTTAAAGGACCTACTGGCTCTGCTAATATTGG
TAAAGCGCTCGATTTATCTTTTGGTAATTATGATGCTTATACAACCATTCAAGTTGCGCAATACATGTCGACCATTGCAA
ATGGTGGTTATCGTGTTGCTCCACATGTGGTTGAACAAATTAGAAGTAGTAAACAAAATGGAAAAATGGGAGCAGTCCAA
AAGACCGTTTCACCAACTGTTTTAAATCAAGTTGATATGACTTCTGCACAGAGAAAATTAGTTACAGATGGGTTATATGA
CGTGGTTCATGGAAGTAATAAATATAAGACCGGTGGGCCACTAGCTGGTATTTCTCCCGGAATTTCTGCTAAAACTGGTA
CAGCTCAGACGACAACCAATGGGAAAACAACCGTAACGTTGTCATTAGCTTCTTATGCTCCATCTAATGATCCTCAAGTA
GTTGTAGCACTAGCTCTGCCAGGATTAAGTACAAATGCTGAATCGGATAATATGACGGCTGCTAAGAAGATCTATGCGGC
ATACTGGAAATATGTCCAATCCAAATCAACCCTTACTAATCCAACTAAAGCGACCTCTGAAACCGCTGCTCAGAACTTGA
ATTCCAATTAA

Upstream 100 bases:

>100_bases
GATAGCACAAAACATGCTTAAGACTTTGTTAATACTATTAGTACACCGATATATTTTCTGGTAGAATGAACGAAGTGATC
TAAAAGGAGCAACATAAATA

Downstream 100 bases:

>100_bases
TCGCAATTGGTTCTGGAAAAATTTTCAGAATAGTGGTAACATGTACAATGCTAGTGGATTTTCGAATTCAAATATATATA
TTAATGGAGGTCATTCCAAT

Product: cell division protein FtsI/penicillin-binding protein 2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 696; Mature: 696

Protein sequence:

>696_residues
MKNPKKIRRPKSELPFRLNLIFFVVFALLLLLVGQLGYLQILYGSKLQAVVNRTDNTVETNNVQRGVIYDSTGKVLVGNT
AHQAISYTKGANVMAQDMFNIANTLGKYLEANDTELSRTDIANYLLADSKNSKYYEKKITNRENLSSKAVQEKEIDYIKN
SDIKLSSKEENAARIFKIMNGAYQLSTVYIKETDVSSKELSEIGEHLSEMPGVKISTSWTRSYPEGNDIKSLAGTVSSSK
TGLPSDEVNTLLAEGYARNDSVGQSYLEKQYESVLKGTKSQTAIQVSSGGQIVKKVQQYAGKKGDNLVLTINSKFQEEVQ
KIMKEASKNAGGQSTGGYAVVMNPKTGAVIALAGADRNPSTGKMTDNVLGTINEPIVMGSVVKGATISGALMDGVITPSN
NTLIDEPIKVAGTGSKSSWFNSTGSANMSVDASRALEVSSNSYMMQLAMKEGGFKYSSGASLSGMNPNVFNKLRGYFEQF
GLGTKTGIDLPGESSGFKGPTGSANIGKALDLSFGNYDAYTTIQVAQYMSTIANGGYRVAPHVVEQIRSSKQNGKMGAVQ
KTVSPTVLNQVDMTSAQRKLVTDGLYDVVHGSNKYKTGGPLAGISPGISAKTGTAQTTTNGKTTVTLSLASYAPSNDPQV
VVALALPGLSTNAESDNMTAAKKIYAAYWKYVQSKSTLTNPTKATSETAAQNLNSN

Sequences:

>Translated_696_residues
MKNPKKIRRPKSELPFRLNLIFFVVFALLLLLVGQLGYLQILYGSKLQAVVNRTDNTVETNNVQRGVIYDSTGKVLVGNT
AHQAISYTKGANVMAQDMFNIANTLGKYLEANDTELSRTDIANYLLADSKNSKYYEKKITNRENLSSKAVQEKEIDYIKN
SDIKLSSKEENAARIFKIMNGAYQLSTVYIKETDVSSKELSEIGEHLSEMPGVKISTSWTRSYPEGNDIKSLAGTVSSSK
TGLPSDEVNTLLAEGYARNDSVGQSYLEKQYESVLKGTKSQTAIQVSSGGQIVKKVQQYAGKKGDNLVLTINSKFQEEVQ
KIMKEASKNAGGQSTGGYAVVMNPKTGAVIALAGADRNPSTGKMTDNVLGTINEPIVMGSVVKGATISGALMDGVITPSN
NTLIDEPIKVAGTGSKSSWFNSTGSANMSVDASRALEVSSNSYMMQLAMKEGGFKYSSGASLSGMNPNVFNKLRGYFEQF
GLGTKTGIDLPGESSGFKGPTGSANIGKALDLSFGNYDAYTTIQVAQYMSTIANGGYRVAPHVVEQIRSSKQNGKMGAVQ
KTVSPTVLNQVDMTSAQRKLVTDGLYDVVHGSNKYKTGGPLAGISPGISAKTGTAQTTTNGKTTVTLSLASYAPSNDPQV
VVALALPGLSTNAESDNMTAAKKIYAAYWKYVQSKSTLTNPTKATSETAAQNLNSN
>Mature_696_residues
MKNPKKIRRPKSELPFRLNLIFFVVFALLLLLVGQLGYLQILYGSKLQAVVNRTDNTVETNNVQRGVIYDSTGKVLVGNT
AHQAISYTKGANVMAQDMFNIANTLGKYLEANDTELSRTDIANYLLADSKNSKYYEKKITNRENLSSKAVQEKEIDYIKN
SDIKLSSKEENAARIFKIMNGAYQLSTVYIKETDVSSKELSEIGEHLSEMPGVKISTSWTRSYPEGNDIKSLAGTVSSSK
TGLPSDEVNTLLAEGYARNDSVGQSYLEKQYESVLKGTKSQTAIQVSSGGQIVKKVQQYAGKKGDNLVLTINSKFQEEVQ
KIMKEASKNAGGQSTGGYAVVMNPKTGAVIALAGADRNPSTGKMTDNVLGTINEPIVMGSVVKGATISGALMDGVITPSN
NTLIDEPIKVAGTGSKSSWFNSTGSANMSVDASRALEVSSNSYMMQLAMKEGGFKYSSGASLSGMNPNVFNKLRGYFEQF
GLGTKTGIDLPGESSGFKGPTGSANIGKALDLSFGNYDAYTTIQVAQYMSTIANGGYRVAPHVVEQIRSSKQNGKMGAVQ
KTVSPTVLNQVDMTSAQRKLVTDGLYDVVHGSNKYKTGGPLAGISPGISAKTGTAQTTTNGKTTVTLSLASYAPSNDPQV
VVALALPGLSTNAESDNMTAAKKIYAAYWKYVQSKSTLTNPTKATSETAAQNLNSN

Specific function: Cell Wall Formation; Pbp-2 Is Responsible For The Determination Of The Rod Shape Of The Cell. Its Synthesize Cross- Linked Peptidoglycan From The Lipid Intermediates. [C]

COG id: COG0768

COG function: function code M; Cell division protein FtsI/penicillin-binding protein 2

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transpeptidase family [H]

Homologues:

Organism=Escherichia coli, GI1786854, Length=513, Percent_Identity=25.3411306042885, Blast_Score=119, Evalue=6e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012338
- InterPro:   IPR005311
- InterPro:   IPR001460 [H]

Pfam domain/function: PF03717 PBP_dimer; PF00905 Transpeptidase [H]

EC number: NA

Molecular weight: Translated: 74449; Mature: 74449

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNPKKIRRPKSELPFRLNLIFFVVFALLLLLVGQLGYLQILYGSKLQAVVNRTDNTVET
CCCCHHHCCCHHHCCEEHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCCEEC
NNVQRGVIYDSTGKVLVGNTAHQAISYTKGANVMAQDMFNIANTLGKYLEANDTELSRTD
CCCCCCEEECCCCCEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHH
IANYLLADSKNSKYYEKKITNRENLSSKAVQEKEIDYIKNSDIKLSSKEENAARIFKIMN
HHHHHHCCCCCCCHHHHHCCCHHCCHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHC
GAYQLSTVYIKETDVSSKELSEIGEHLSEMPGVKISTSWTRSYPEGNDIKSLAGTVSSSK
CCEEEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHCCCC
TGLPSDEVNTLLAEGYARNDSVGQSYLEKQYESVLKGTKSQTAIQVSSGGQIVKKVQQYA
CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHH
GKKGDNLVLTINSKFQEEVQKIMKEASKNAGGQSTGGYAVVMNPKTGAVIALAGADRNPS
CCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCC
TGKMTDNVLGTINEPIVMGSVVKGATISGALMDGVITPSNNTLIDEPIKVAGTGSKSSWF
CCCCCHHHHHCCCCCEEECHHHCCCEECCHHHCCEECCCCCCCCCCCEEEEECCCCCCCC
NSTGSANMSVDASRALEVSSNSYMMQLAMKEGGFKYSSGASLSGMNPNVFNKLRGYFEQF
CCCCCCCEEECHHHEEEECCCCEEEEEEECCCCEEECCCCCCCCCCHHHHHHHHHHHHHH
GLGTKTGIDLPGESSGFKGPTGSANIGKALDLSFGNYDAYTTIQVAQYMSTIANGGYRVA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEC
PHVVEQIRSSKQNGKMGAVQKTVSPTVLNQVDMTSAQRKLVTDGLYDVVHGSNKYKTGGP
HHHHHHHHCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
LAGISPGISAKTGTAQTTTNGKTTVTLSLASYAPSNDPQVVVALALPGLSTNAESDNMTA
CCCCCCCCCCCCCCCEEECCCCEEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCHHH
AKKIYAAYWKYVQSKSTLTNPTKATSETAAQNLNSN
HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MKNPKKIRRPKSELPFRLNLIFFVVFALLLLLVGQLGYLQILYGSKLQAVVNRTDNTVET
CCCCHHHCCCHHHCCEEHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCCEEC
NNVQRGVIYDSTGKVLVGNTAHQAISYTKGANVMAQDMFNIANTLGKYLEANDTELSRTD
CCCCCCEEECCCCCEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHH
IANYLLADSKNSKYYEKKITNRENLSSKAVQEKEIDYIKNSDIKLSSKEENAARIFKIMN
HHHHHHCCCCCCCHHHHHCCCHHCCHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHC
GAYQLSTVYIKETDVSSKELSEIGEHLSEMPGVKISTSWTRSYPEGNDIKSLAGTVSSSK
CCEEEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHCCCC
TGLPSDEVNTLLAEGYARNDSVGQSYLEKQYESVLKGTKSQTAIQVSSGGQIVKKVQQYA
CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHH
GKKGDNLVLTINSKFQEEVQKIMKEASKNAGGQSTGGYAVVMNPKTGAVIALAGADRNPS
CCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCC
TGKMTDNVLGTINEPIVMGSVVKGATISGALMDGVITPSNNTLIDEPIKVAGTGSKSSWF
CCCCCHHHHHCCCCCEEECHHHCCCEECCHHHCCEECCCCCCCCCCCEEEEECCCCCCCC
NSTGSANMSVDASRALEVSSNSYMMQLAMKEGGFKYSSGASLSGMNPNVFNKLRGYFEQF
CCCCCCCEEECHHHEEEECCCCEEEEEEECCCCEEECCCCCCCCCCHHHHHHHHHHHHHH
GLGTKTGIDLPGESSGFKGPTGSANIGKALDLSFGNYDAYTTIQVAQYMSTIANGGYRVA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEC
PHVVEQIRSSKQNGKMGAVQKTVSPTVLNQVDMTSAQRKLVTDGLYDVVHGSNKYKTGGP
HHHHHHHHCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
LAGISPGISAKTGTAQTTTNGKTTVTLSLASYAPSNDPQVVVALALPGLSTNAESDNMTA
CCCCCCCCCCCCCCCEEECCCCEEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCHHH
AKKIYAAYWKYVQSKSTLTNPTKATSETAAQNLNSN
HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]