| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is yusP [H]
Identifier: 116492412
GI number: 116492412
Start: 682810
End: 684276
Strand: Direct
Name: yusP [H]
Synonym: PEPE_0642
Alternate gene names: 116492412
Gene position: 682810-684276 (Clockwise)
Preceding gene: 116492411
Following gene: 116492415
Centisome position: 37.26
GC content: 37.01
Gene sequence:
>1467_bases ATGGAGAAAAAACAAACAAATGTGGTCGTTGTAACAGTCGCTATTTTTGTTGCAACTTTTATGTCGGCGATTGAAGGAAC AATTGTTTCAACAGCGATGCCGACCATTGTAGGAGATTTACATGGCGTTAGTTTGATGAATTGGGTTATTTCAATTTTCC TACTAACTAATGCAATATTTACCCCAATTTACGGGAAGTTGTCTGATATTTTCGGTCGTAAACGAGTGTTTATTTTTGGA ATTATTATATTTTTGATTGGCTCGATGTTAAGTGGGATGGCCCACTCAATGGGTTTCTTGATTTTATGGCGCGCATTGCA AGGAATCGGGGCTGGATCGATTATGCCGGTTTCTAATACCATTATTGCTGATATTTATCCGATTGAAAAACGGGCCAAGG TAATGGGACTAAATGGTTCAGCATGGGGAATTGCTTCTATTATTGCTCCGCTATTAGGAGGCTTTATTGTTGATAATCTA AGTTGGCATTGGATTTTCTTTATCAATTTACCGATTGGAATTATCACCATCTTTTTAATTCAGTTCTTCCTTAAAGAAGA GGTTAGTGTCCATAGCAAGAAAATTGACTACCTAGGTAGTTTTTGGTTAATGGTAGCTTTACTGGGACTAATGTACGGTT TCCAATTGATGGGTGAAAGTTCATTCTCATGGATTACATTGGTGATTTCGTTTGTGATTTTCATCGTGGGAGCTGGCTTA TTTATTCGTCAAGAAAAACGGGCGGAAGATCCCATTATTTTCCTAGATTTGTTTAACAACCGCACATTTGTAATTCAAAA TGTGGCGACGATGTTGGTCTCTGGTTTGTTGATTGGTTTCGAAGTTTACTTACCAAGCTGGACACAAGGAATTTTAGGAG TGCCAGCTTCATTAGCTGGATTTGCAGTAACTCCAAGTTCAATTTTATGGATTTTCGGTTCATTCTTAGCAGGACGGATG ATTGTTAAATTAAAGGCCAATCAGATCTTGACCATTAGTTTATCAATCCTAGCTGTTGGTAGCTTATTATTAGCTTTAGT ACCGGCTTCAACACCGTTCTTGGCTTTCTTCTTTATTGCAGCTATTTTAGGAGTTGGTTTTGGAATTACAATTACTTCCA CATTAGTAATTTCACAGCAATTAGTAACTAAAGATCGGATTGGGGTAGCAACTTCCTTTAATACTTTGGCTAAGACACTG GGCCAAACCATTATGATGTCCGTTTTCGGAATCATTATGAATGGGACGATGAATGCCGGAGTTAAGGCGAACCCTAAAAT TAATATGGATATGATGAACAAAGTTATCAATCCTCAAACGGCTAAAACTTTACCAGAAACTTTATTGCCAACGTTGAGAA ATGTTTTATATCAAGCTTTGCATAATATCTACATTGGTTGCTTTATTTTGATTGTGGTTGCTTTAATCATTAATGCGTTT GACCGTCGCTCAAAAGATAATATTTAA
Upstream 100 bases:
>100_bases CTTTAAACGACTTTTTTAAAAACTAAAAAATTTGATTAATGGCTGTGTTGATGTCTAAACGGATATTAACACGGCTATTA TATTGGTTGAGAGGTAATAA
Downstream 100 bases:
>100_bases AAAAATGGATTTAGAACCTAGCTGAGAGGCTAGCCTTCTAAATCCATTATTTTTTACGCTCAATACACAATAAAATGGGC GGATTATTAATCTGGTTGAT
Product: major facilitator superfamily permease
Products: Proton [Cytoplasm]; multidrug [Periplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 488; Mature: 488
Protein sequence:
>488_residues MEKKQTNVVVVTVAIFVATFMSAIEGTIVSTAMPTIVGDLHGVSLMNWVISIFLLTNAIFTPIYGKLSDIFGRKRVFIFG IIIFLIGSMLSGMAHSMGFLILWRALQGIGAGSIMPVSNTIIADIYPIEKRAKVMGLNGSAWGIASIIAPLLGGFIVDNL SWHWIFFINLPIGIITIFLIQFFLKEEVSVHSKKIDYLGSFWLMVALLGLMYGFQLMGESSFSWITLVISFVIFIVGAGL FIRQEKRAEDPIIFLDLFNNRTFVIQNVATMLVSGLLIGFEVYLPSWTQGILGVPASLAGFAVTPSSILWIFGSFLAGRM IVKLKANQILTISLSILAVGSLLLALVPASTPFLAFFFIAAILGVGFGITITSTLVISQQLVTKDRIGVATSFNTLAKTL GQTIMMSVFGIIMNGTMNAGVKANPKINMDMMNKVINPQTAKTLPETLLPTLRNVLYQALHNIYIGCFILIVVALIINAF DRRSKDNI
Sequences:
>Translated_488_residues MEKKQTNVVVVTVAIFVATFMSAIEGTIVSTAMPTIVGDLHGVSLMNWVISIFLLTNAIFTPIYGKLSDIFGRKRVFIFG IIIFLIGSMLSGMAHSMGFLILWRALQGIGAGSIMPVSNTIIADIYPIEKRAKVMGLNGSAWGIASIIAPLLGGFIVDNL SWHWIFFINLPIGIITIFLIQFFLKEEVSVHSKKIDYLGSFWLMVALLGLMYGFQLMGESSFSWITLVISFVIFIVGAGL FIRQEKRAEDPIIFLDLFNNRTFVIQNVATMLVSGLLIGFEVYLPSWTQGILGVPASLAGFAVTPSSILWIFGSFLAGRM IVKLKANQILTISLSILAVGSLLLALVPASTPFLAFFFIAAILGVGFGITITSTLVISQQLVTKDRIGVATSFNTLAKTL GQTIMMSVFGIIMNGTMNAGVKANPKINMDMMNKVINPQTAKTLPETLLPTLRNVLYQALHNIYIGCFILIVVALIINAF DRRSKDNI >Mature_488_residues MEKKQTNVVVVTVAIFVATFMSAIEGTIVSTAMPTIVGDLHGVSLMNWVISIFLLTNAIFTPIYGKLSDIFGRKRVFIFG IIIFLIGSMLSGMAHSMGFLILWRALQGIGAGSIMPVSNTIIADIYPIEKRAKVMGLNGSAWGIASIIAPLLGGFIVDNL SWHWIFFINLPIGIITIFLIQFFLKEEVSVHSKKIDYLGSFWLMVALLGLMYGFQLMGESSFSWITLVISFVIFIVGAGL FIRQEKRAEDPIIFLDLFNNRTFVIQNVATMLVSGLLIGFEVYLPSWTQGILGVPASLAGFAVTPSSILWIFGSFLAGRM IVKLKANQILTISLSILAVGSLLLALVPASTPFLAFFFIAAILGVGFGITITSTLVISQQLVTKDRIGVATSFNTLAKTL GQTIMMSVFGIIMNGTMNAGVKANPKINMDMMNKVINPQTAKTLPETLLPTLRNVLYQALHNIYIGCFILIVVALIINAF DRRSKDNI
Specific function: Translocase That Confers Resistance To Substances Of High Hydrophobicity. [C]
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. EmrB family [H]
Homologues:
Organism=Escherichia coli, GI1789042, Length=406, Percent_Identity=31.2807881773399, Blast_Score=163, Evalue=2e-41, Organism=Escherichia coli, GI1788710, Length=337, Percent_Identity=33.5311572700297, Blast_Score=149, Evalue=6e-37, Organism=Escherichia coli, GI1790195, Length=328, Percent_Identity=30.7926829268293, Blast_Score=144, Evalue=2e-35, Organism=Escherichia coli, GI87081983, Length=409, Percent_Identity=27.6283618581907, Blast_Score=138, Evalue=7e-34, Organism=Escherichia coli, GI1788392, Length=245, Percent_Identity=29.7959183673469, Blast_Score=99, Evalue=6e-22, Organism=Escherichia coli, GI1788509, Length=145, Percent_Identity=31.7241379310345, Blast_Score=73, Evalue=4e-14, Organism=Escherichia coli, GI1790146, Length=155, Percent_Identity=32.258064516129, Blast_Score=73, Evalue=4e-14, Organism=Escherichia coli, GI87081738, Length=131, Percent_Identity=35.1145038167939, Blast_Score=67, Evalue=3e-12, Organism=Escherichia coli, GI48994889, Length=166, Percent_Identity=28.3132530120482, Blast_Score=65, Evalue=1e-11, Organism=Caenorhabditis elegans, GI32564663, Length=140, Percent_Identity=31.4285714285714, Blast_Score=72, Evalue=5e-13, Organism=Saccharomyces cerevisiae, GI6322958, Length=499, Percent_Identity=25.6513026052104, Blast_Score=112, Evalue=2e-25, Organism=Saccharomyces cerevisiae, GI6323735, Length=329, Percent_Identity=25.531914893617, Blast_Score=107, Evalue=4e-24, Organism=Saccharomyces cerevisiae, GI6319770, Length=387, Percent_Identity=27.1317829457364, Blast_Score=103, Evalue=4e-23, Organism=Saccharomyces cerevisiae, GI6321663, Length=146, Percent_Identity=32.8767123287671, Blast_Score=93, Evalue=8e-20, Organism=Saccharomyces cerevisiae, GI6325455, Length=166, Percent_Identity=31.9277108433735, Blast_Score=90, Evalue=9e-19, Organism=Saccharomyces cerevisiae, GI6324954, Length=408, Percent_Identity=21.5686274509804, Blast_Score=66, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6323935, Length=399, Percent_Identity=25.062656641604, Blast_Score=63, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004638 - InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR005829 - InterPro: IPR001411 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 53300; Mature: 53300
Theoretical pI: Translated: 10.22; Mature: 10.22
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEKKQTNVVVVTVAIFVATFMSAIEGTIVSTAMPTIVGDLHGVSLMNWVISIFLLTNAIF CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TPIYGKLSDIFGRKRVFIFGIIIFLIGSMLSGMAHSMGFLILWRALQGIGAGSIMPVSNT HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCC IIADIYPIEKRAKVMGLNGSAWGIASIIAPLLGGFIVDNLSWHWIFFINLPIGIITIFLI CEEEEECHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHH QFFLKEEVSVHSKKIDYLGSFWLMVALLGLMYGFQLMGESSFSWITLVISFVIFIVGAGL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCH FIRQEKRAEDPIIFLDLFNNRTFVIQNVATMLVSGLLIGFEVYLPSWTQGILGVPASLAG HEECCCCCCCCEEEEEECCCCEEHHHHHHHHHHHHHHHHHHEECCCHHHHHHCCCHHHCC FAVTPSSILWIFGSFLAGRMIVKLKANQILTISLSILAVGSLLLALVPASTPFLAFFFIA CCCCHHHHHHHHHHHHHCCEEEEEECCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHH AILGVGFGITITSTLVISQQLVTKDRIGVATSFNTLAKTLGQTIMMSVFGIIMNGTMNAG HHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC VKANPKINMDMMNKVINPQTAKTLPETLLPTLRNVLYQALHNIYIGCFILIVVALIINAF CCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DRRSKDNI HCCCCCCC >Mature Secondary Structure MEKKQTNVVVVTVAIFVATFMSAIEGTIVSTAMPTIVGDLHGVSLMNWVISIFLLTNAIF CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TPIYGKLSDIFGRKRVFIFGIIIFLIGSMLSGMAHSMGFLILWRALQGIGAGSIMPVSNT HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCC IIADIYPIEKRAKVMGLNGSAWGIASIIAPLLGGFIVDNLSWHWIFFINLPIGIITIFLI CEEEEECHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHH QFFLKEEVSVHSKKIDYLGSFWLMVALLGLMYGFQLMGESSFSWITLVISFVIFIVGAGL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCH FIRQEKRAEDPIIFLDLFNNRTFVIQNVATMLVSGLLIGFEVYLPSWTQGILGVPASLAG HEECCCCCCCCEEEEEECCCCEEHHHHHHHHHHHHHHHHHHEECCCHHHHHHCCCHHHCC FAVTPSSILWIFGSFLAGRMIVKLKANQILTISLSILAVGSLLLALVPASTPFLAFFFIA CCCCHHHHHHHHHHHHHCCEEEEEECCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHH AILGVGFGITITSTLVISQQLVTKDRIGVATSFNTLAKTLGQTIMMSVFGIIMNGTMNAG HHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC VKANPKINMDMMNKVINPQTAKTLPETLLPTLRNVLYQALHNIYIGCFILIVVALIINAF CCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DRRSKDNI HCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Proton [Periplasm]; multidrug [Cytoplasm] [C]
Specific reaction: Proton [Periplasm] + multidrug [Cytoplasm] = Proton [Cytoplasm] + multidrug [Periplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]