| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is epsJ [H]
Identifier: 116492371
GI number: 116492371
Start: 631749
End: 632717
Strand: Direct
Name: epsJ [H]
Synonym: PEPE_0576
Alternate gene names: 116492371
Gene position: 631749-632717 (Clockwise)
Preceding gene: 116492370
Following gene: 116492372
Centisome position: 34.48
GC content: 26.52
Gene sequence:
>969_bases ATGGCTAAAAAAGTTTCTATTGTTATCCCCATCTACAATGTGGATGGTTTTTTAGAAAGATGTCTAACTTCTGTAAAGGA ACAGAGCTATACATTTTTTGAAGTCCTATTAATTGATGATGGGTCCACAGATAATTCAAATAAAATTTGCAATGAATTTG TAAAAAATGATGATAGGTTTATATATATATATCAGAAAAATGCAGGAGTCTCTGCCGCCAGAAATAATGGAATTCGAAAT GCTTATGGTGATTATATAACATTCGTAGATGGTGATGATTTTCTCGAAGAAAATCACATAGAGAAAATGGTTAATGGTTT TTTTAAAGCAGAATTAGTTATTTCTGGAAGAAAAAATGTTACTGAAAAAGGTGTTCAAGAAATATTTCAATCTAATGAAG AGCTATTTTTTAATAGAGGAAATTTAGTTAAACAAATTCTTAAACTGGGTATTGTGTATAGCTTTCCATGGAATAAAATG TATAAAAAGAAAATTCTAGATGAGAATTCTCTTCACTTTGATGAAAGTTTGGATTATGGAGAAGATTTGGTTTTTAACAT TCAGTATGCTTTATTAATACATGAAAGTGTTTTGATTACCAGTAGTACGTATAATTACGTTTATAGAGAAAGTAGTGCAA GTAATCATATGAACGAAGACTCTCTAAGGAAGAGAGTTACAGATCTTTTATCTATTAAGAAAACTATACAAATACTTCCA AGTAATTTTATGAAAGAAAAAACTTTCTTGAATAAAAGGATAGTTGTGGAAGGTGCAAGATATATTAGATTAATGTATGT GTATAACTTTTCAGCTACTGACATTAATTTTTACAAAAAAGTGGTAGAAAACTCATATAAATTGATTAAAAATTCATTGA GCAATAAAGAAAAAATAATATATTATGGTAATTTAAAAATGCCTAAAACAATGAATTTTATATCAAAATTAAAAAACATT AAAAATTAA
Upstream 100 bases:
>100_bases TACGCTGGACTATGTTGGATTTTAAAAGTACCCTTTATTAAGGTTATAACTAATTTTATAAGTAAAAATAAACATTAAAT TGTTTAAAAAGGGTGGGTTA
Downstream 100 bases:
>100_bases ATCAGTAATCATCTATTTAGTGGGGAATATGGATGTTTGCTCTTTGAGATTAAACTATTAAAATATAGTTTGATTCAAAG ATACAGAAACTTTAGGAGAA
Product: glycosyltransferase-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 322; Mature: 321
Protein sequence:
>322_residues MAKKVSIVIPIYNVDGFLERCLTSVKEQSYTFFEVLLIDDGSTDNSNKICNEFVKNDDRFIYIYQKNAGVSAARNNGIRN AYGDYITFVDGDDFLEENHIEKMVNGFFKAELVISGRKNVTEKGVQEIFQSNEELFFNRGNLVKQILKLGIVYSFPWNKM YKKKILDENSLHFDESLDYGEDLVFNIQYALLIHESVLITSSTYNYVYRESSASNHMNEDSLRKRVTDLLSIKKTIQILP SNFMKEKTFLNKRIVVEGARYIRLMYVYNFSATDINFYKKVVENSYKLIKNSLSNKEKIIYYGNLKMPKTMNFISKLKNI KN
Sequences:
>Translated_322_residues MAKKVSIVIPIYNVDGFLERCLTSVKEQSYTFFEVLLIDDGSTDNSNKICNEFVKNDDRFIYIYQKNAGVSAARNNGIRN AYGDYITFVDGDDFLEENHIEKMVNGFFKAELVISGRKNVTEKGVQEIFQSNEELFFNRGNLVKQILKLGIVYSFPWNKM YKKKILDENSLHFDESLDYGEDLVFNIQYALLIHESVLITSSTYNYVYRESSASNHMNEDSLRKRVTDLLSIKKTIQILP SNFMKEKTFLNKRIVVEGARYIRLMYVYNFSATDINFYKKVVENSYKLIKNSLSNKEKIIYYGNLKMPKTMNFISKLKNI KN >Mature_321_residues AKKVSIVIPIYNVDGFLERCLTSVKEQSYTFFEVLLIDDGSTDNSNKICNEFVKNDDRFIYIYQKNAGVSAARNNGIRNA YGDYITFVDGDDFLEENHIEKMVNGFFKAELVISGRKNVTEKGVQEIFQSNEELFFNRGNLVKQILKLGIVYSFPWNKMY KKKILDENSLHFDESLDYGEDLVFNIQYALLIHESVLITSSTYNYVYRESSASNHMNEDSLRKRVTDLLSIKKTIQILPS NFMKEKTFLNKRIVVEGARYIRLMYVYNFSATDINFYKKVVENSYKLIKNSLSNKEKIIYYGNLKMPKTMNFISKLKNIK N
Specific function: May be involved in the production of the exopolysaccharide (EPS) component of the extracellular matrix during biofilm formation. EPS is responsible for the adhesion of chains of cells into bundles [H]
COG id: COG0463
COG function: function code M; Glycosyltransferases involved in cell wall biogenesis
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 2 family [H]
Homologues:
Organism=Escherichia coli, GI1790044, Length=218, Percent_Identity=27.9816513761468, Blast_Score=93, Evalue=2e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001173 [H]
Pfam domain/function: PF00535 Glycos_transf_2 [H]
EC number: 2.-.-.- [C]
Molecular weight: Translated: 37571; Mature: 37439
Theoretical pI: Translated: 9.26; Mature: 9.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKKVSIVIPIYNVDGFLERCLTSVKEQSYTFFEVLLIDDGSTDNSNKICNEFVKNDDRF CCCEEEEEEEEECCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCE IYIYQKNAGVSAARNNGIRNAYGDYITFVDGDDFLEENHIEKMVNGFFKAELVISGRKNV EEEEECCCCCCHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHEEEEEEECCCCH TEKGVQEIFQSNEELFFNRGNLVKQILKLGIVYSFPWNKMYKKKILDENSLHFDESLDYG HHHHHHHHHHCCCCEEEECCHHHHHHHHHCEEEECCCHHHHHHHHCCCCCCCCCCCCCCC EDLVFNIQYALLIHESVLITSSTYNYVYRESSASNHMNEDSLRKRVTDLLSIKKTIQILP CCEEEEEEEEEEEEEEEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC SNFMKEKTFLNKRIVVEGARYIRLMYVYNFSATDINFYKKVVENSYKLIKNSLSNKEKII HHHHHHHHHHCCHHEEECCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEE YYGNLKMPKTMNFISKLKNIKN EECCCCCCHHHHHHHHHHHCCC >Mature Secondary Structure AKKVSIVIPIYNVDGFLERCLTSVKEQSYTFFEVLLIDDGSTDNSNKICNEFVKNDDRF CCEEEEEEEEECCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCE IYIYQKNAGVSAARNNGIRNAYGDYITFVDGDDFLEENHIEKMVNGFFKAELVISGRKNV EEEEECCCCCCHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHEEEEEEECCCCH TEKGVQEIFQSNEELFFNRGNLVKQILKLGIVYSFPWNKMYKKKILDENSLHFDESLDYG HHHHHHHHHHCCCCEEEECCHHHHHHHHHCEEEECCCHHHHHHHHCCCCCCCCCCCCCCC EDLVFNIQYALLIHESVLITSSTYNYVYRESSASNHMNEDSLRKRVTDLLSIKKTIQILP CCEEEEEEEEEEEEEEEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC SNFMKEKTFLNKRIVVEGARYIRLMYVYNFSATDINFYKKVVENSYKLIKNSLSNKEKII HHHHHHHHHHCCHHEEECCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEE YYGNLKMPKTMNFISKLKNIKN EECCCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8969506; 9384377 [H]