| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is 116492364
Identifier: 116492364
GI number: 116492364
Start: 623791
End: 624573
Strand: Direct
Name: 116492364
Synonym: PEPE_0569
Alternate gene names: NA
Gene position: 623791-624573 (Clockwise)
Preceding gene: 116492363
Following gene: 116492365
Centisome position: 34.04
GC content: 30.27
Gene sequence:
>783_bases GTGGATATACAAGTATTAGTTGCTGCACATAAAAAGTTCCCTATGCCAGCAGATAAAGATTTATATCTACCAGTACTGGT AGGAGCGACAAAAAATTATAAGAATGGAATTGAATATCAACGCGATGATCAAGGAGATAATATTTCTTATAAAAATCCTA ATTATAACGAATTAACGGCTATTTACTGGGCATGGAAAAATTTAGATGCTGATGTTATTGGTTTGGTACATTATCGACGA TTATTTAGTATGAGTAGAAAACGAGAATTAGATAATATTCTTAACAGAAATGATATTAAATCACTGTTGGATAAAGCTCC CATTATTCTTCCCAAAAAAAGAAATTATTATATCGAAACTAACTATTCACATTATGTACATGCTCATCATAAAGAGCCTT TGGATGAAACCAGAAAAGTCATTCAAAAGAACTATCCCAAATATCTAAATACTTTTGATTCGGTAATGAAGCGAAGATCG GCGCACATGTTTAATATGTTTATTATGAAAAATAAAGAATTTAAACAATATGCAAGTTGGTTATTTGATATTTTGTTTGA AGTTGAAAAAAATATAGATATTTCTGACTATTCTGTTCAGGAAGCAAGAGTGTTTGGTTATATCTCTGAACTTTTGTTGG ACGTATGGATAGAAACCAATAATAAGAAGTATATCGAAACCAATTGGATTCAAATTGGAGATAGAAAAATTATAGAAAAG GCGGTCAACTTTCTTAGCAGGAAATTTTTGCCTGATACGAATAGAAAGAAGACGCATTTTTAA
Upstream 100 bases:
>100_bases GGTGTTCTATTCGATATTGGTATTTTGTTTAGAACAGTGGCAATTGTATTCAAACCAAATGGCGCATATTAAATTATTTT TACAATAAAGGTGGATTTCT
Downstream 100 bases:
>100_bases TCATGTAATTAATTTATAAATATAAGGTAAACTATGAGTGAGGATAGTAATGAAAAAAATATTAGTAGTAGGTGACTTCA TAAAGGGTAGCGGACTTACT
Product: lipopolysaccharide biosynthesis glycosyltransferase
Products: NA
Alternate protein names: Capsular Biosynthesis Protein; Exopolysaccharide Biosynthesis Protein; Lipopolysaccharide Biosynthesis Glycosyltransferase; Glycosyl Transferase; Galactosyl Transferase; Glycosyl Transferase Family Protein; Glycosyl Transferase Alpha-1 3-Galactosyltransferase; EpsIH Glycosyltransferase; Sugar Transferase; Polysachharide Biosynthesis Protein
Number of amino acids: Translated: 260; Mature: 260
Protein sequence:
>260_residues MDIQVLVAAHKKFPMPADKDLYLPVLVGATKNYKNGIEYQRDDQGDNISYKNPNYNELTAIYWAWKNLDADVIGLVHYRR LFSMSRKRELDNILNRNDIKSLLDKAPIILPKKRNYYIETNYSHYVHAHHKEPLDETRKVIQKNYPKYLNTFDSVMKRRS AHMFNMFIMKNKEFKQYASWLFDILFEVEKNIDISDYSVQEARVFGYISELLLDVWIETNNKKYIETNWIQIGDRKIIEK AVNFLSRKFLPDTNRKKTHF
Sequences:
>Translated_260_residues MDIQVLVAAHKKFPMPADKDLYLPVLVGATKNYKNGIEYQRDDQGDNISYKNPNYNELTAIYWAWKNLDADVIGLVHYRR LFSMSRKRELDNILNRNDIKSLLDKAPIILPKKRNYYIETNYSHYVHAHHKEPLDETRKVIQKNYPKYLNTFDSVMKRRS AHMFNMFIMKNKEFKQYASWLFDILFEVEKNIDISDYSVQEARVFGYISELLLDVWIETNNKKYIETNWIQIGDRKIIEK AVNFLSRKFLPDTNRKKTHF >Mature_260_residues MDIQVLVAAHKKFPMPADKDLYLPVLVGATKNYKNGIEYQRDDQGDNISYKNPNYNELTAIYWAWKNLDADVIGLVHYRR LFSMSRKRELDNILNRNDIKSLLDKAPIILPKKRNYYIETNYSHYVHAHHKEPLDETRKVIQKNYPKYLNTFDSVMKRRS AHMFNMFIMKNKEFKQYASWLFDILFEVEKNIDISDYSVQEARVFGYISELLLDVWIETNNKKYIETNWIQIGDRKIIEK AVNFLSRKFLPDTNRKKTHF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31144; Mature: 31144
Theoretical pI: Translated: 9.79; Mature: 9.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDIQVLVAAHKKFPMPADKDLYLPVLVGATKNYKNGIEYQRDDQGDNISYKNPNYNELTA CCEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEE IYWAWKNLDADVIGLVHYRRLFSMSRKRELDNILNRNDIKSLLDKAPIILPKKRNYYIET EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCEEEECCCCEEEEE NYSHYVHAHHKEPLDETRKVIQKNYPKYLNTFDSVMKRRSAHMFNMFIMKNKEFKQYASW CCCEEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHH LFDILFEVEKNIDISDYSVQEARVFGYISELLLDVWIETNNKKYIETNWIQIGDRKIIEK HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEECHHHHHHH AVNFLSRKFLPDTNRKKTHF HHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MDIQVLVAAHKKFPMPADKDLYLPVLVGATKNYKNGIEYQRDDQGDNISYKNPNYNELTA CCEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEE IYWAWKNLDADVIGLVHYRRLFSMSRKRELDNILNRNDIKSLLDKAPIILPKKRNYYIET EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCEEEECCCCEEEEE NYSHYVHAHHKEPLDETRKVIQKNYPKYLNTFDSVMKRRSAHMFNMFIMKNKEFKQYASW CCCEEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHH LFDILFEVEKNIDISDYSVQEARVFGYISELLLDVWIETNNKKYIETNWIQIGDRKIIEK HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEECHHHHHHH AVNFLSRKFLPDTNRKKTHF HHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA