| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is sau3AIR [H]
Identifier: 116492327
GI number: 116492327
Start: 585611
End: 587089
Strand: Reverse
Name: sau3AIR [H]
Synonym: PEPE_0531
Alternate gene names: 116492327
Gene position: 587089-585611 (Counterclockwise)
Preceding gene: 116492333
Following gene: 116492320
Centisome position: 32.04
GC content: 32.45
Gene sequence:
>1479_bases ATGCCAAGTCACGAATATACAAAAACCCAATTAATAGGATTATTAGAGAGGGCTGTCAACAAAACTTTAGGTGAAGTTGA TACGGCTCATGTATTCGATAAAACTAAAAATAATAAAAAAATAACCGGAATTGCCGGGGATGTAATTGAAAATTCTGTTT TAGGTTATCCTTCAGATAGTTATCAGTCGCCTGATTTATGTGTAGATGGTGTCGATATCGAATTAAAAACAACTGGTATA AAGGTGGCAAAGAAAAAATCAAAATCCCACCTTTTTGAAGCCAAAGAGCCAATGTCCATCACAGCAGTTTCACCTGAAAA AATCACTACTGAAGAATTTGAAAGTTCTAATTTTTGGCATAAATTAGAACGAATGCTGTTAGTTTACTATTTTTATGATT CAGACGTTACTGTAACAGCAGCAGAATATGCCAATTTTTTAATTAAAGGATATGACTTTCATGAATTTTCAAAAGAAGAT CAAGAAACACTAAAAAATGACTGGAAGATTGTCCAACAATTTATACAAAACTTGCAGAATGGTTATGGTGAAGAAGCCTC TAGTCAGTATCCCAGAATTTCATCCGAAATAAGAAGCCAATTAATGATGATTGATACTGCACCCAAATGGCCGCATCGCC CACGATTTAGATTAAAAAGAGCAACTGTCACTACCATGGTCCAAGAGTACTTTGGTAAAAAATTAGAAAATCTTAGTCAA AGTTATTCATCTTTTGATGCTTTAGATCAAGAGTTACATAAATTTACTAAACAATACCATGGTATGACTATTAGAGAATT GATTAAAGAATTAAGTATCTCTATTAAGCTTAATAAACAAGATGATGCACCTAAATCTGTAACAGAACAAATCGTTACTC ATATGTTTGGTGCCAAATCAAAAAAAATAAATAGCATCGAAGATTTTAAGAAATTAGGGTTAATCGCCAAAACAATTACT CAAACCGCAAAGGGTACTAGAACTGAAGATGTGAAAATTTCCCGTATTGATTTTGAGGAATTTAAGCCTGAAAACGATTT GTTCGAAGAGTCACTAATTTATAATTATTTTAACGAACAACAATTTCTATGTATTCTTTTTGAAGAACCCAATACCAGTT CGAAACTCCTAGAAAATAGATTTCTGGGGTTCAAACGTCTATCCTTTCCAGACGAATTTATCAACCAAGATGTTAAGAAA ACCTGGCAAAAAATCCGCTACTTAGTTATCCATAATAAATTAGTTGATGTTATTAGCTACGATAAAAATGGGCATCCAAG AAAAAATAAGAAAACTAACACAATTGTATCAGCACCAAATTTTCCTAAATCAAGTGAAGGCAGCGTTTTTGTACGTGGAA GTAGTTCTGACTCATGCCATAAGCCTTTAACTATCAATGGGATTCGCATGTATTCACAATATATTTGGATTAAGGGTAGC ACCTTCCTAAATATGTTAAATGATACAAAATTTATTTAA
Upstream 100 bases:
>100_bases TCCTTTCGTATTAGTTATTATACATTAAAATACGCAATTGATCAACATTATCAAGTGATATAATAAATTAAAAAGCACTA GCTGGAGATAATAGATAATC
Downstream 100 bases:
>100_bases ACTAAAATAGATTTTAAATAAATAGCTAATTTAAAATCTTTTAATTTAGGTAGATTGTAAAATTTAAGTTGAACATATTA GTGGACAGAAAAACCCATAA
Product: MutH family type II restriction endonuclease
Products: NA
Alternate protein names: R.Sau3AI; Endonuclease Sau3AI; Type II restriction enzyme Sau3AI [H]
Number of amino acids: Translated: 492; Mature: 491
Protein sequence:
>492_residues MPSHEYTKTQLIGLLERAVNKTLGEVDTAHVFDKTKNNKKITGIAGDVIENSVLGYPSDSYQSPDLCVDGVDIELKTTGI KVAKKKSKSHLFEAKEPMSITAVSPEKITTEEFESSNFWHKLERMLLVYYFYDSDVTVTAAEYANFLIKGYDFHEFSKED QETLKNDWKIVQQFIQNLQNGYGEEASSQYPRISSEIRSQLMMIDTAPKWPHRPRFRLKRATVTTMVQEYFGKKLENLSQ SYSSFDALDQELHKFTKQYHGMTIRELIKELSISIKLNKQDDAPKSVTEQIVTHMFGAKSKKINSIEDFKKLGLIAKTIT QTAKGTRTEDVKISRIDFEEFKPENDLFEESLIYNYFNEQQFLCILFEEPNTSSKLLENRFLGFKRLSFPDEFINQDVKK TWQKIRYLVIHNKLVDVISYDKNGHPRKNKKTNTIVSAPNFPKSSEGSVFVRGSSSDSCHKPLTINGIRMYSQYIWIKGS TFLNMLNDTKFI
Sequences:
>Translated_492_residues MPSHEYTKTQLIGLLERAVNKTLGEVDTAHVFDKTKNNKKITGIAGDVIENSVLGYPSDSYQSPDLCVDGVDIELKTTGI KVAKKKSKSHLFEAKEPMSITAVSPEKITTEEFESSNFWHKLERMLLVYYFYDSDVTVTAAEYANFLIKGYDFHEFSKED QETLKNDWKIVQQFIQNLQNGYGEEASSQYPRISSEIRSQLMMIDTAPKWPHRPRFRLKRATVTTMVQEYFGKKLENLSQ SYSSFDALDQELHKFTKQYHGMTIRELIKELSISIKLNKQDDAPKSVTEQIVTHMFGAKSKKINSIEDFKKLGLIAKTIT QTAKGTRTEDVKISRIDFEEFKPENDLFEESLIYNYFNEQQFLCILFEEPNTSSKLLENRFLGFKRLSFPDEFINQDVKK TWQKIRYLVIHNKLVDVISYDKNGHPRKNKKTNTIVSAPNFPKSSEGSVFVRGSSSDSCHKPLTINGIRMYSQYIWIKGS TFLNMLNDTKFI >Mature_491_residues PSHEYTKTQLIGLLERAVNKTLGEVDTAHVFDKTKNNKKITGIAGDVIENSVLGYPSDSYQSPDLCVDGVDIELKTTGIK VAKKKSKSHLFEAKEPMSITAVSPEKITTEEFESSNFWHKLERMLLVYYFYDSDVTVTAAEYANFLIKGYDFHEFSKEDQ ETLKNDWKIVQQFIQNLQNGYGEEASSQYPRISSEIRSQLMMIDTAPKWPHRPRFRLKRATVTTMVQEYFGKKLENLSQS YSSFDALDQELHKFTKQYHGMTIRELIKELSISIKLNKQDDAPKSVTEQIVTHMFGAKSKKINSIEDFKKLGLIAKTITQ TAKGTRTEDVKISRIDFEEFKPENDLFEESLIYNYFNEQQFLCILFEEPNTSSKLLENRFLGFKRLSFPDEFINQDVKKT WQKIRYLVIHNKLVDVISYDKNGHPRKNKKTNTIVSAPNFPKSSEGSVFVRGSSSDSCHKPLTINGIRMYSQYIWIKGST FLNMLNDTKFI
Specific function: Recognizes the double-stranded sequence GATC and cleaves before G-1 [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011337 - InterPro: IPR011335 [H]
Pfam domain/function: PF02976 MutH [H]
EC number: =3.1.21.4 [H]
Molecular weight: Translated: 56852; Mature: 56721
Theoretical pI: Translated: 8.80; Mature: 8.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSHEYTKTQLIGLLERAVNKTLGEVDTAHVFDKTKNNKKITGIAGDVIENSVLGYPSDS CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEEEEHHHHHCCCCCCCCCC YQSPDLCVDGVDIELKTTGIKVAKKKSKSHLFEAKEPMSITAVSPEKITTEEFESSNFWH CCCCCCEECCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHCCHHHH KLERMLLVYYFYDSDVTVTAAEYANFLIKGYDFHEFSKEDQETLKNDWKIVQQFIQNLQN HHHHHEEEEEEECCCEEEEHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHH GYGEEASSQYPRISSEIRSQLMMIDTAPKWPHRPRFRLKRATVTTMVQEYFGKKLENLSQ CCCCCHHCCCCCHHHHHHHHEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH SYSSFDALDQELHKFTKQYHGMTIRELIKELSISIKLNKQDDAPKSVTEQIVTHMFGAKS HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCC KKINSIEDFKKLGLIAKTITQTAKGTRTEDVKISRIDFEEFKPENDLFEESLIYNYFNEQ CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHCCCCCHHHHHHHHHHHCCCC QFLCILFEEPNTSSKLLENRFLGFKRLSFPDEFINQDVKKTWQKIRYLVIHNKLVDVISY EEEEEEEECCCCHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC DKNGHPRKNKKTNTIVSAPNFPKSSEGSVFVRGSSSDSCHKPLTINGIRMYSQYIWIKGS CCCCCCCCCCCCCEEEECCCCCCCCCCCEEEECCCCCCCCCCEEECCEEEEEEEEEEECH TFLNMLNDTKFI HHHHHHHCCCCC >Mature Secondary Structure PSHEYTKTQLIGLLERAVNKTLGEVDTAHVFDKTKNNKKITGIAGDVIENSVLGYPSDS CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEEEEHHHHHCCCCCCCCCC YQSPDLCVDGVDIELKTTGIKVAKKKSKSHLFEAKEPMSITAVSPEKITTEEFESSNFWH CCCCCCEECCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHCCHHHH KLERMLLVYYFYDSDVTVTAAEYANFLIKGYDFHEFSKEDQETLKNDWKIVQQFIQNLQN HHHHHEEEEEEECCCEEEEHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHH GYGEEASSQYPRISSEIRSQLMMIDTAPKWPHRPRFRLKRATVTTMVQEYFGKKLENLSQ CCCCCHHCCCCCHHHHHHHHEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH SYSSFDALDQELHKFTKQYHGMTIRELIKELSISIKLNKQDDAPKSVTEQIVTHMFGAKS HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCC KKINSIEDFKKLGLIAKTITQTAKGTRTEDVKISRIDFEEFKPENDLFEESLIYNYFNEQ CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHCCCCCHHHHHHHHHHHCCCC QFLCILFEEPNTSSKLLENRFLGFKRLSFPDEFINQDVKKTWQKIRYLVIHNKLVDVISY EEEEEEEECCCCHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC DKNGHPRKNKKTNTIVSAPNFPKSSEGSVFVRGSSSDSCHKPLTINGIRMYSQYIWIKGS CCCCCCCCCCCCCEEEECCCCCCCCCCCEEEECCCCCCCCCCEEECCEEEEEEEEEEECH TFLNMLNDTKFI HHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2227451 [H]