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The map label for this gene is ynbA [H]

Identifier: 116492198

GI number: 116492198

Start: 439450

End: 440712

Strand: Reverse

Name: ynbA [H]

Synonym: PEPE_0395

Alternate gene names: 116492198

Gene position: 440712-439450 (Counterclockwise)

Preceding gene: 116492204

Following gene: 116492197

Centisome position: 24.05

GC content: 38.95

Gene sequence:

>1263_bases
ATGAATGAGAAAATACTAATAGCGGGACTCGAACTCCCCAATATGAACCTGGATTATGCCATGGATGAATTAAGGTCGCT
AGCCATGGCCAACAATATGGACGTGGTTGATCAAGTGACTCAAAAATTAGAGCGTCCTAATGCCGCCACTTACTTTGGTA
AAGGTAAAGTTGAGGATCTGGTTCAAATTGCAACGGCCTTAGAGGTGGATACCATTGTTTTAAACGATGAACTTTCTCCC
AGCCAGTTAACTAATCTTGAAAAAGAAACTAATCTACATTTTATTGACCGTACAGGATTAATTCTAGAAATCTTTGCTAA
TCGAGCTCACTCTCGTGAAGCTAAACTTCAAGTTGAATTAGCTAAACTTCAATACCAACTACCTCGATTACGTACTAGTT
CCACCCAACGCTTGGATCAGCAAACTGCTGGTAATACAGGAGGCGGCTTCACCAACCGTGGTTCCGGTGAAACTAAACTG
GAGTTAAACCGACGGACAATCCGTAATAAAATTAATCATATTAATAAAGAACTAAAGGAAATGACAACCTCTTCTGACAT
TCAACGTAAGCAACGCGATAAGAAAGACATTCCAAGTGTTGCATTGGTCGGTTACACCAATACTGGTAAATCAACTACCA
TGAACGGGTTAGTTCGTATGTATGGTCGCAATGAAGACAAACAAGTTTTTGAAAAAGACATGCTCTTCGCTACTTTGGAT
ACGAGCGTGCGTAAGTTAACGTTCCCCGATCAAAAAGAATTAGTTTTGAGTGATACCGTCGGGTTCGTTAGCCATTTGCC
TCATCAATTAGTCAAAGCTTTCCGTTCGACTTTGGCGGAAGCTGCTAAAGCTGATTTACTAGTTCAAATTGTTGATATTT
CTGACCCCCACTATCGTGAAATGATGCAAACTACAGAAGATACCTTAAACGAAATCGGTGTAACCGATATTCCTATGATT
TACGCCTTTAATAAAGCCGATTTAGCTGGAGTTAGTTATCCCACTCTAGATGGCAATGAATTAACTTATTCAGCTAAACA
ACTTCAATCACTAGAAATGGTTACCGCTTTAATTAAAAAACAAGTCTTCAAAAATTATGTTGAAGCTAAGTTCTTAATTC
CTTTTAACGAGGGACAGGTGGTCGATTTTCTTAACGGCAACGCTGATGTAAAAAAGACCGATTATACCGAAGAAGGAACC
GAAATTACCGCAGAATTAAAAGAAAAAGATTATCAACGCCTTGCTCGTTATGTAATCCAATAA

Upstream 100 bases:

>100_bases
AAAGCACCATGTTATCTCATAAACGTTAATTACATGTAACTAATCAGCTTCCATGATATAATTATCTAAACGTTTTCAAA
CTTTGGAGGCCATTTATTTT

Downstream 100 bases:

>100_bases
TTAAAGTAAAAACAGACGCTCAATTATGGACGTCTGTTTTTTTACTCCTCTTGACCTTCGGGTTACCCTAAGGTTTATAC
TCTATGAATGAGGTGATGGC

Product: GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MNEKILIAGLELPNMNLDYAMDELRSLAMANNMDVVDQVTQKLERPNAATYFGKGKVEDLVQIATALEVDTIVLNDELSP
SQLTNLEKETNLHFIDRTGLILEIFANRAHSREAKLQVELAKLQYQLPRLRTSSTQRLDQQTAGNTGGGFTNRGSGETKL
ELNRRTIRNKINHINKELKEMTTSSDIQRKQRDKKDIPSVALVGYTNTGKSTTMNGLVRMYGRNEDKQVFEKDMLFATLD
TSVRKLTFPDQKELVLSDTVGFVSHLPHQLVKAFRSTLAEAAKADLLVQIVDISDPHYREMMQTTEDTLNEIGVTDIPMI
YAFNKADLAGVSYPTLDGNELTYSAKQLQSLEMVTALIKKQVFKNYVEAKFLIPFNEGQVVDFLNGNADVKKTDYTEEGT
EITAELKEKDYQRLARYVIQ

Sequences:

>Translated_420_residues
MNEKILIAGLELPNMNLDYAMDELRSLAMANNMDVVDQVTQKLERPNAATYFGKGKVEDLVQIATALEVDTIVLNDELSP
SQLTNLEKETNLHFIDRTGLILEIFANRAHSREAKLQVELAKLQYQLPRLRTSSTQRLDQQTAGNTGGGFTNRGSGETKL
ELNRRTIRNKINHINKELKEMTTSSDIQRKQRDKKDIPSVALVGYTNTGKSTTMNGLVRMYGRNEDKQVFEKDMLFATLD
TSVRKLTFPDQKELVLSDTVGFVSHLPHQLVKAFRSTLAEAAKADLLVQIVDISDPHYREMMQTTEDTLNEIGVTDIPMI
YAFNKADLAGVSYPTLDGNELTYSAKQLQSLEMVTALIKKQVFKNYVEAKFLIPFNEGQVVDFLNGNADVKKTDYTEEGT
EITAELKEKDYQRLARYVIQ
>Mature_420_residues
MNEKILIAGLELPNMNLDYAMDELRSLAMANNMDVVDQVTQKLERPNAATYFGKGKVEDLVQIATALEVDTIVLNDELSP
SQLTNLEKETNLHFIDRTGLILEIFANRAHSREAKLQVELAKLQYQLPRLRTSSTQRLDQQTAGNTGGGFTNRGSGETKL
ELNRRTIRNKINHINKELKEMTTSSDIQRKQRDKKDIPSVALVGYTNTGKSTTMNGLVRMYGRNEDKQVFEKDMLFATLD
TSVRKLTFPDQKELVLSDTVGFVSHLPHQLVKAFRSTLAEAAKADLLVQIVDISDPHYREMMQTTEDTLNEIGVTDIPMI
YAFNKADLAGVSYPTLDGNELTYSAKQLQSLEMVTALIKKQVFKNYVEAKFLIPFNEGQVVDFLNGNADVKKTDYTEEGT
EITAELKEKDYQRLARYVIQ

Specific function: Unknown

COG id: COG2262

COG function: function code R; GTPases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI310124269, Length=217, Percent_Identity=31.7972350230415, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI310124267, Length=217, Percent_Identity=31.7972350230415, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI310124171, Length=217, Percent_Identity=31.7972350230415, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI310124169, Length=217, Percent_Identity=31.7972350230415, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI310133116, Length=217, Percent_Identity=31.3364055299539, Blast_Score=111, Evalue=1e-24,
Organism=Homo sapiens, GI310133118, Length=217, Percent_Identity=31.3364055299539, Blast_Score=110, Evalue=2e-24,
Organism=Escherichia coli, GI1790615, Length=403, Percent_Identity=33.0024813895782, Blast_Score=221, Evalue=5e-59,
Organism=Caenorhabditis elegans, GI17561038, Length=333, Percent_Identity=31.5315315315315, Blast_Score=124, Evalue=8e-29,
Organism=Drosophila melanogaster, GI24650079, Length=312, Percent_Identity=29.1666666666667, Blast_Score=110, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016496
- InterPro:   IPR006073
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 47456; Mature: 47456

Theoretical pI: Translated: 5.39; Mature: 5.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEKILIAGLELPNMNLDYAMDELRSLAMANNMDVVDQVTQKLERPNAATYFGKGKVEDL
CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEECCCCHHHH
VQIATALEVDTIVLNDELSPSQLTNLEKETNLHFIDRTGLILEIFANRAHSREAKLQVEL
HHHHHHHHHEEEEECCCCCHHHHHCCHHHCCEEEEECCCHHHHHHHHHCCCCHHHHHHHH
AKLQYQLPRLRTSSTQRLDQQTAGNTGGGFTNRGSGETKLELNRRTIRNKINHINKELKE
HHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHH
MTTSSDIQRKQRDKKDIPSVALVGYTNTGKSTTMNGLVRMYGRNEDKQVFEKDMLFATLD
HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
TSVRKLTFPDQKELVLSDTVGFVSHLPHQLVKAFRSTLAEAAKADLLVQIVDISDPHYRE
CHHHEECCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCHHHHH
MMQTTEDTLNEIGVTDIPMIYAFNKADLAGVSYPTLDGNELTYSAKQLQSLEMVTALIKK
HHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHH
QVFKNYVEAKFLIPFNEGQVVDFLNGNADVKKTDYTEEGTEITAELKEKDYQRLARYVIQ
HHHHHHHCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNEKILIAGLELPNMNLDYAMDELRSLAMANNMDVVDQVTQKLERPNAATYFGKGKVEDL
CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEECCCCHHHH
VQIATALEVDTIVLNDELSPSQLTNLEKETNLHFIDRTGLILEIFANRAHSREAKLQVEL
HHHHHHHHHEEEEECCCCCHHHHHCCHHHCCEEEEECCCHHHHHHHHHCCCCHHHHHHHH
AKLQYQLPRLRTSSTQRLDQQTAGNTGGGFTNRGSGETKLELNRRTIRNKINHINKELKE
HHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHH
MTTSSDIQRKQRDKKDIPSVALVGYTNTGKSTTMNGLVRMYGRNEDKQVFEKDMLFATLD
HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
TSVRKLTFPDQKELVLSDTVGFVSHLPHQLVKAFRSTLAEAAKADLLVQIVDISDPHYRE
CHHHEECCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCHHHHH
MMQTTEDTLNEIGVTDIPMIYAFNKADLAGVSYPTLDGNELTYSAKQLQSLEMVTALIKK
HHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHH
QVFKNYVEAKFLIPFNEGQVVDFLNGNADVKKTDYTEEGTEITAELKEKDYQRLARYVIQ
HHHHHHHCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]