| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is 116492151
Identifier: 116492151
GI number: 116492151
Start: 395702
End: 396331
Strand: Reverse
Name: 116492151
Synonym: PEPE_0348
Alternate gene names: NA
Gene position: 396331-395702 (Counterclockwise)
Preceding gene: 116492152
Following gene: 116492149
Centisome position: 21.63
GC content: 37.14
Gene sequence:
>630_bases ATGACGGACGAAAAAATCGAATGGCGTAAAGAAGAAGCTGGTTTTTCACTTAGAAAAAAGCCTCAAATTTTAACCATCCC TGCTCAAAATTATTTTAGTATCAAAGGTAACGGTGATCCCAATTTACCCGATTTTCAGAAGCGAGTTCAAACACTTTATC CTTTATCCTATACAATTCGCATGAGTCAAAAAAATGATTGGAATATTCCTAACTTTAAGTTATACACCGTTTATCCGCTC CAAGGATATTGGGGAATTCAACCTCAATATTTAGATGCGCCAGTCATGCAAAAAGAACATTTCACATATACAATCAGTAT TAAACAACCTGATTTTGTGACTGATGCAATTGCTGCAGAAGCGTTAGTTCGGGCAAAATCTAAAATCGATGCTGATTTAT TTGACCAAGTCTTTTTCGACCATCAACCAGAACAATTAGTAGCGCAGATTTTACATGTCGGTGCGTTCGACGATGAACCT GAAAGCTTCGCCAAATTAGAGCAATTTATCGATGAAGCTGGGTACGTACGCAGTGAAAAAGAACATACCGAAATCTATAT GAGTGATTTTCGGCGTGTTGAAGAAGCACAGCGTAAAACAATTTTACGAGTAGCCATTCAAAAGAAATAA
Upstream 100 bases:
>100_bases AGGGAACCATTGTGGTGGTTCAAGATCACCCTAAAAATATCACAATGAAAATCAGTGACGCTAACAAAGCGCTCAACTAA GTAATTCACGAGGAATTCTT
Downstream 100 bases:
>100_bases AAAATAGTAACGCGCCTCACTATAAAGTAAGGGACGTTACTATTTTTTAATTTAAGGCATGTCGTTTCCAGCAGCGTAGT AAATGTCATACCATTCTTGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 209; Mature: 208
Protein sequence:
>209_residues MTDEKIEWRKEEAGFSLRKKPQILTIPAQNYFSIKGNGDPNLPDFQKRVQTLYPLSYTIRMSQKNDWNIPNFKLYTVYPL QGYWGIQPQYLDAPVMQKEHFTYTISIKQPDFVTDAIAAEALVRAKSKIDADLFDQVFFDHQPEQLVAQILHVGAFDDEP ESFAKLEQFIDEAGYVRSEKEHTEIYMSDFRRVEEAQRKTILRVAIQKK
Sequences:
>Translated_209_residues MTDEKIEWRKEEAGFSLRKKPQILTIPAQNYFSIKGNGDPNLPDFQKRVQTLYPLSYTIRMSQKNDWNIPNFKLYTVYPL QGYWGIQPQYLDAPVMQKEHFTYTISIKQPDFVTDAIAAEALVRAKSKIDADLFDQVFFDHQPEQLVAQILHVGAFDDEP ESFAKLEQFIDEAGYVRSEKEHTEIYMSDFRRVEEAQRKTILRVAIQKK >Mature_208_residues TDEKIEWRKEEAGFSLRKKPQILTIPAQNYFSIKGNGDPNLPDFQKRVQTLYPLSYTIRMSQKNDWNIPNFKLYTVYPLQ GYWGIQPQYLDAPVMQKEHFTYTISIKQPDFVTDAIAAEALVRAKSKIDADLFDQVFFDHQPEQLVAQILHVGAFDDEPE SFAKLEQFIDEAGYVRSEKEHTEIYMSDFRRVEEAQRKTILRVAIQKK
Specific function: Unknown
COG id: COG4832
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24502; Mature: 24371
Theoretical pI: Translated: 5.73; Mature: 5.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDEKIEWRKEEAGFSLRKKPQILTIPAQNYFSIKGNGDPNLPDFQKRVQTLYPLSYTIR CCCCCCHHHHHHCCCCCCCCCCEEEECCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEE MSQKNDWNIPNFKLYTVYPLQGYWGIQPQYLDAPVMQKEHFTYTISIKQPDFVTDAIAAE ECCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHH ALVRAKSKIDADLFDQVFFDHQPEQLVAQILHVGAFDDEPESFAKLEQFIDEAGYVRSEK HHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCH EHTEIYMSDFRRVEEAQRKTILRVAIQKK HHHHHHHHHHHHHHHHHHHHHHHHEECCC >Mature Secondary Structure TDEKIEWRKEEAGFSLRKKPQILTIPAQNYFSIKGNGDPNLPDFQKRVQTLYPLSYTIR CCCCCHHHHHHCCCCCCCCCCEEEECCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEE MSQKNDWNIPNFKLYTVYPLQGYWGIQPQYLDAPVMQKEHFTYTISIKQPDFVTDAIAAE ECCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHH ALVRAKSKIDADLFDQVFFDHQPEQLVAQILHVGAFDDEPESFAKLEQFIDEAGYVRSEK HHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCH EHTEIYMSDFRRVEEAQRKTILRVAIQKK HHHHHHHHHHHHHHHHHHHHHHHHEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA