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The map label for this gene is rbcR [H]

Identifier: 116492111

GI number: 116492111

Start: 351754

End: 352608

Strand: Reverse

Name: rbcR [H]

Synonym: PEPE_0307

Alternate gene names: 116492111

Gene position: 352608-351754 (Counterclockwise)

Preceding gene: 116492113

Following gene: 116492110

Centisome position: 19.24

GC content: 37.78

Gene sequence:

>855_bases
ATGCTAGATAATCGTTACGCCACTTTTGCACTACTCTGTAAAAATAAATCATATACTAAAACTGCCCGAGCATTATTCAT
CACGCAACCTGCAGTTTCTCAACAAATTAAAAGCTTAGAGGATGAACTACAACTAAAATTAGTTGAATATCACCATCCTC
GTTTAGAAATCACCAGTGCAGGTGAGCAACTGGCTCATTTCATTGAAACTACTCAACACCAAGAAGATAAATTATTAACC
CAATTACGCCAGCCGATTTCGACAACCAATCTTAAGTTTGGGGTAACGCATTCGGTTAGTATCCTTATCGCTCCGGCTTT
AATCCAAAATTGGCGAAAAAAATATCACAATATTCAATGTATCGTTTCAAACACGCGCGATATTTTATCTCAAATCGATG
AAGGTACTTTAGACTTTGCTGTTTTAGAAGGAAACTTTGATAAACATGCATATGGTAGCCAAATCGTTACCCACGAAAAA
TTTGTAGCCGTCACACGTTCAAGTAACCCTCTCGCCAATCAAAAAAACTTAGCACTTGAAAAAGTACTTTCGGAACCTCT
TTTACTTCGTGAAGAAGGTTCAGGTACCCGCTCAATTTTTACCGATTGGGCCAGTTCTTTTAACATCTACAAGGAAGATT
TTGCGCAAGTGCTAGAGTTGGGAAGTTCCACTGGTATTATTAAACTCCTAGAAACGACCGGGGTCAGTTTCATGTACCAA
TCTCTAATCCAAGCGGAATTAGAATCTAAAAAACTCGCATTACTCAAAATTCAAGGTTTAGACCTTACGCGTCCGATTTC
ATTGGTATATGCTAAAGATAGCTTCTTCGAAAACGAATATCGACAACTTTTTTAA

Upstream 100 bases:

>100_bases
ATCTCTTAACTTCACGCTTAATATCGTATCAAAAATGGTAGATAAAATATAATTATGTTTTATAATTGGTTTATAAATTA
AACTTATAAGGACAAAAAAG

Downstream 100 bases:

>100_bases
ACTGGGATAAATTCAGCGTTTTGACAATATAATTCCTAGGTTTATTGTAAAAATTGTGGTACGATTTTAACTATAGATGA
AGAGCTTATGGAGGAATTCA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MLDNRYATFALLCKNKSYTKTARALFITQPAVSQQIKSLEDELQLKLVEYHHPRLEITSAGEQLAHFIETTQHQEDKLLT
QLRQPISTTNLKFGVTHSVSILIAPALIQNWRKKYHNIQCIVSNTRDILSQIDEGTLDFAVLEGNFDKHAYGSQIVTHEK
FVAVTRSSNPLANQKNLALEKVLSEPLLLREEGSGTRSIFTDWASSFNIYKEDFAQVLELGSSTGIIKLLETTGVSFMYQ
SLIQAELESKKLALLKIQGLDLTRPISLVYAKDSFFENEYRQLF

Sequences:

>Translated_284_residues
MLDNRYATFALLCKNKSYTKTARALFITQPAVSQQIKSLEDELQLKLVEYHHPRLEITSAGEQLAHFIETTQHQEDKLLT
QLRQPISTTNLKFGVTHSVSILIAPALIQNWRKKYHNIQCIVSNTRDILSQIDEGTLDFAVLEGNFDKHAYGSQIVTHEK
FVAVTRSSNPLANQKNLALEKVLSEPLLLREEGSGTRSIFTDWASSFNIYKEDFAQVLELGSSTGIIKLLETTGVSFMYQ
SLIQAELESKKLALLKIQGLDLTRPISLVYAKDSFFENEYRQLF
>Mature_284_residues
MLDNRYATFALLCKNKSYTKTARALFITQPAVSQQIKSLEDELQLKLVEYHHPRLEITSAGEQLAHFIETTQHQEDKLLT
QLRQPISTTNLKFGVTHSVSILIAPALIQNWRKKYHNIQCIVSNTRDILSQIDEGTLDFAVLEGNFDKHAYGSQIVTHEK
FVAVTRSSNPLANQKNLALEKVLSEPLLLREEGSGTRSIFTDWASSFNIYKEDFAQVLELGSSTGIIKLLETTGVSFMYQ
SLIQAELESKKLALLKIQGLDLTRPISLVYAKDSFFENEYRQLF

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcAB) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=280, Percent_Identity=23.9285714285714, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787879, Length=274, Percent_Identity=25.5474452554745, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1790399, Length=282, Percent_Identity=22.3404255319149, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32256; Mature: 32256

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDNRYATFALLCKNKSYTKTARALFITQPAVSQQIKSLEDELQLKLVEYHHPRLEITSA
CCCCCEEEEEEEECCCCCHHHHHEEEEECHHHHHHHHHHHHHHHHHHEECCCCCEEEEHH
GEQLAHFIETTQHQEDKLLTQLRQPISTTNLKFGVTHSVSILIAPALIQNWRKKYHNIQC
HHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCEEE
IVSNTRDILSQIDEGTLDFAVLEGNFDKHAYGSQIVTHEKFVAVTRSSNPLANQKNLALE
EECCHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCEECCEEEEEECCCCCCCCCHHHHHH
KVLSEPLLLREEGSGTRSIFTDWASSFNIYKEDFAQVLELGSSTGIIKLLETTGVSFMYQ
HHHCCCCEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEHHHCCHHHHHH
SLIQAELESKKLALLKIQGLDLTRPISLVYAKDSFFENEYRQLF
HHHHHHHHCCCEEEEEEECCCCCCCEEEEEECHHHHHHHHHHCC
>Mature Secondary Structure
MLDNRYATFALLCKNKSYTKTARALFITQPAVSQQIKSLEDELQLKLVEYHHPRLEITSA
CCCCCEEEEEEEECCCCCHHHHHEEEEECHHHHHHHHHHHHHHHHHHEECCCCCEEEEHH
GEQLAHFIETTQHQEDKLLTQLRQPISTTNLKFGVTHSVSILIAPALIQNWRKKYHNIQC
HHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCEEE
IVSNTRDILSQIDEGTLDFAVLEGNFDKHAYGSQIVTHEKFVAVTRSSNPLANQKNLALE
EECCHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCEECCEEEEEECCCCCCCCCHHHHHH
KVLSEPLLLREEGSGTRSIFTDWASSFNIYKEDFAQVLELGSSTGIIKLLETTGVSFMYQ
HHHCCCCEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEHHHCCHHHHHH
SLIQAELESKKLALLKIQGLDLTRPISLVYAKDSFFENEYRQLF
HHHHHHHHCCCEEEEEEECCCCCCCEEEEEECHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1907267; 2708310 [H]